covalent chromatin modification Gene Set

Dataset GO Biological Process Annotations
Category structural or functional annotations
Type biological process
Description The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups. (Gene Ontology, GO_0016569)
External Link http://amigo.geneontology.org/amigo/term/GO:0016569
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Genes

303 genes participating in the covalent chromatin modification biological process from the curated GO Biological Process Annotations dataset.

Symbol Name
ACTL6A actin-like 6A
APBB1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)
ARID4A AT rich interactive domain 4A (RBP1-like)
ARID4B AT rich interactive domain 4B (RBP1-like)
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila)
ASH2L ash2 (absent, small, or homeotic)-like (Drosophila)
ASXL1 additional sex combs like transcriptional regulator 1
ATF2 activating transcription factor 2
ATM ATM serine/threonine kinase
ATXN3L ataxin 3-like
ATXN7 ataxin 7
ATXN7L3 ataxin 7-like 3
AURKA aurora kinase A
AURKB aurora kinase B
AURKC aurora kinase C
BAP1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
BAZ1B bromodomain adjacent to zinc finger domain, 1B
BAZ2A bromodomain adjacent to zinc finger domain, 2A
BCOR BCL6 corepressor
BRCA2 breast cancer 2, early onset
BRCC3 BRCA1/BRCA2-containing complex, subunit 3
BRD1 bromodomain containing 1
BRD4 bromodomain containing 4
BRD8 bromodomain containing 8
BRMS1 breast cancer metastasis suppressor 1
BRMS1L breast cancer metastasis-suppressor 1-like
BRPF1 bromodomain and PHD finger containing, 1
BRPF3 bromodomain and PHD finger containing, 3
C14ORF169 chromosome 14 open reading frame 169
CARM1 coactivator-associated arginine methyltransferase 1
CBX8 chromobox homolog 8
CCDC101 coiled-coil domain containing 101
CCNB1 cyclin B1
CDC73 cell division cycle 73
CDK1 cyclin-dependent kinase 1
CDK2 cyclin-dependent kinase 2
CDYL chromodomain protein, Y-like
CHD5 chromodomain helicase DNA binding protein 5
CHEK1 checkpoint kinase 1
CLOCK clock circadian regulator
COPRS coordinator of PRMT5, differentiation stimulator
CPA4 carboxypeptidase A4
CREBBP CREB binding protein
CRTC2 CREB regulated transcription coactivator 2
CSRP2BP CSRP2 binding protein
CTBP1 C-terminal binding protein 1
CTCFL CCCTC-binding factor (zinc finger protein)-like
CTR9 CTR9, Paf1/RNA polymerase II complex component
CUL4B cullin 4B
CXXC1 CXXC finger protein 1
DDB1 damage-specific DNA binding protein 1, 127kDa
DDB2 damage-specific DNA binding protein 2, 48kDa
DMAP1 DNA methyltransferase 1 associated protein 1
DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha
DNMT3B DNA (cytosine-5-)-methyltransferase 3 beta
DOT1L DOT1-like histone H3K79 methyltransferase
DPY30 dpy-30 homolog (C. elegans)
DR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2)
DTX3L deltex 3 like, E3 ubiquitin ligase
EED embryonic ectoderm development
EHMT1 euchromatic histone-lysine N-methyltransferase 1
EHMT2 euchromatic histone-lysine N-methyltransferase 2
ELK4 ELK4, ETS-domain protein (SRF accessory protein 1)
ELP3 elongator acetyltransferase complex subunit 3
ELP4 elongator acetyltransferase complex subunit 4
ENY2 enhancer of yellow 2 homolog (Drosophila)
EP300 E1A binding protein p300
EP400 E1A binding protein p400
EPC1 enhancer of polycomb homolog 1 (Drosophila)
EYA1 EYA transcriptional coactivator and phosphatase 1
EYA2 EYA transcriptional coactivator and phosphatase 2
EYA3 EYA transcriptional coactivator and phosphatase 3
EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit
FBL fibrillarin
GSG2 germ cell associated 2 (haspin)
GTF3C4 general transcription factor IIIC, polypeptide 4, 90kDa
HAT1 histone acetyltransferase 1
HCFC1 host cell factor C1
HDAC1 histone deacetylase 1
HDAC10 histone deacetylase 10
HDAC11 histone deacetylase 11
HDAC2 histone deacetylase 2
HDAC3 histone deacetylase 3
HDAC4 histone deacetylase 4
HDAC5 histone deacetylase 5
HDAC6 histone deacetylase 6
HDAC7 histone deacetylase 7
HDAC8 histone deacetylase 8
HDAC9 histone deacetylase 9
HELLS helicase, lymphoid-specific
HIPK4 homeodomain interacting protein kinase 4
HLCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)
HMGA2 high mobility group AT-hook 2
HOPX HOP homeobox
HSF4 heat shock transcription factor 4
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase
ING3 inhibitor of growth family, member 3
ING4 inhibitor of growth family, member 4
ING5 inhibitor of growth family, member 5
IRF4 interferon regulatory factor 4
JADE1 jade family PHD finger 1
JADE2 jade family PHD finger 2
JADE3 jade family PHD finger 3
JAK2 Janus kinase 2
JMJD6 jumonji domain containing 6
KANSL1 KAT8 regulatory NSL complex subunit 1
KANSL2 KAT8 regulatory NSL complex subunit 2
KANSL3 KAT8 regulatory NSL complex subunit 3
KAT2A K(lysine) acetyltransferase 2A
KAT2B K(lysine) acetyltransferase 2B
KAT5 K(lysine) acetyltransferase 5
KAT6A K(lysine) acetyltransferase 6A
KAT6B K(lysine) acetyltransferase 6B
KAT7 K(lysine) acetyltransferase 7
KAT8 K(lysine) acetyltransferase 8
KDM1A lysine (K)-specific demethylase 1A
KDM1B lysine (K)-specific demethylase 1B
KDM2A lysine (K)-specific demethylase 2A
KDM2B lysine (K)-specific demethylase 2B
KDM3A lysine (K)-specific demethylase 3A
KDM4A lysine (K)-specific demethylase 4A
KDM4C lysine (K)-specific demethylase 4C
KDM4D lysine (K)-specific demethylase 4D
KDM5B lysine (K)-specific demethylase 5B
KDM5C lysine (K)-specific demethylase 5C
KDM5D lysine (K)-specific demethylase 5D
KDM6A lysine (K)-specific demethylase 6A
KDM6B lysine (K)-specific demethylase 6B
KDM7A lysine (K)-specific demethylase 7A
KDM8 lysine (K)-specific demethylase 8
KMT2A lysine (K)-specific methyltransferase 2A
KMT2B lysine (K)-specific methyltransferase 2B
KMT2C lysine (K)-specific methyltransferase 2C
KMT2D lysine (K)-specific methyltransferase 2D
KMT2E lysine (K)-specific methyltransferase 2E
LDB1 LIM domain binding 1
LEF1 lymphoid enhancer-binding factor 1
LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
LOXL2 lysyl oxidase-like 2
MAP3K12 mitogen-activated protein kinase kinase kinase 12
MAP3K7 mitogen-activated protein kinase kinase kinase 7
MBD3 methyl-CpG binding domain protein 3
MBIP MAP3K12 binding inhibitory protein 1
MCRS1 microspherule protein 1
MEAF6 MYST/Esa1-associated factor 6
MECP2 methyl CpG binding protein 2
MED24 mediator complex subunit 24
MEN1 multiple endocrine neoplasia I
MGEA5 meningioma expressed antigen 5 (hyaluronidase)
MORF4L1 mortality factor 4 like 1
MSL1 male-specific lethal 1 homolog (Drosophila)
MSL2 male-specific lethal 2 homolog (Drosophila)
MSL3 male-specific lethal 3 homolog (Drosophila)
MT3 metallothionein 3
MTA2 metastasis associated 1 family, member 2
MYOD1 myogenic differentiation 1
MYSM1 Myb-like, SWIRM and MPN domains 1
NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit
NAA60 N(alpha)-acetyltransferase 60, NatF catalytic subunit
NACC2 NACC family member 2, BEN and BTB (POZ) domain containing
NCOA1 nuclear receptor coactivator 1
NCOA2 nuclear receptor coactivator 2
NCOA3 nuclear receptor coactivator 3
NEK11 NIMA-related kinase 11
NSD1 nuclear receptor binding SET domain protein 1
OGT O-linked N-acetylglucosamine (GlcNAc) transferase
PADI2 peptidyl arginine deiminase, type II
PADI4 peptidyl arginine deiminase, type IV
PAF1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
PAXIP1 PAX interacting (with transcription-activation domain) protein 1
PCGF1 polycomb group ring finger 1
PCGF2 polycomb group ring finger 2
PER1 period circadian clock 1
PER2 period circadian clock 2
PHB prohibitin
PHC1 polyhomeotic homolog 1 (Drosophila)
PHF2 PHD finger protein 2
PHF20 PHD finger protein 20
PHF8 PHD finger protein 8
PIM3 Pim-3 proto-oncogene, serine/threonine kinase
PKN1 protein kinase N1
POLE3 polymerase (DNA directed), epsilon 3, accessory subunit
POLE4 polymerase (DNA-directed), epsilon 4, accessory subunit
PPM1F protein phosphatase, Mg2+/Mn2+ dependent, 1F
PRDM14 PR domain containing 14
PRDM2 PR domain containing 2, with ZNF domain
PRDM5 PR domain containing 5
PRDM6 PR domain containing 6
PRDM7 PR domain containing 7
PRDM8 PR domain containing 8
PRDM9 PR domain containing 9
PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit
PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit
PRKCA protein kinase C, alpha
PRKCB protein kinase C, beta
PRMT1 protein arginine methyltransferase 1
PRMT2 protein arginine methyltransferase 2
PRMT3 protein arginine methyltransferase 3
PRMT5 protein arginine methyltransferase 5
PRMT6 protein arginine methyltransferase 6
PRMT7 protein arginine methyltransferase 7
PRMT8 protein arginine methyltransferase 8
RAG1 recombination activating gene 1
RBBP5 retinoblastoma binding protein 5
RCOR1 REST corepressor 1
REST RE1-silencing transcription factor
RING1 ring finger protein 1
RNF168 ring finger protein 168, E3 ubiquitin protein ligase
RNF2 ring finger protein 2
RNF20 ring finger protein 20, E3 ubiquitin protein ligase
RNF40 ring finger protein 40, E3 ubiquitin protein ligase
RNF8 ring finger protein 8, E3 ubiquitin protein ligase
RPS6KA4 ribosomal protein S6 kinase, 90kDa, polypeptide 4
RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5
RTF1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
RUVBL1 RuvB-like AAA ATPase 1
RUVBL2 RuvB-like AAA ATPase 2
RYBP RING1 and YY1 binding protein
SALL1 spalt-like transcription factor 1
SAP130 Sin3A-associated protein, 130kDa
SATB1 SATB homeobox 1
SETD1A SET domain containing 1A
SETD1B SET domain containing 1B
SETD2 SET domain containing 2
SETD3 SET domain containing 3
SETD7 SET domain containing (lysine methyltransferase) 7
SETD8 SET domain containing (lysine methyltransferase) 8
SETDB1 SET domain, bifurcated 1
SETDB2 SET domain, bifurcated 2
SETMAR SET domain and mariner transposase fusion gene
SFPQ splicing factor proline/glutamine-rich
SIN3A SIN3 transcription regulator family member A
SIN3B SIN3 transcription regulator family member B
SIRT1 sirtuin 1
SIRT2 sirtuin 2
SIRT3 sirtuin 3
SIRT6 sirtuin 6
SIRT7 sirtuin 7
SKP1 S-phase kinase-associated protein 1
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
SMYD1 SET and MYND domain containing 1
SMYD2 SET and MYND domain containing 2
SMYD3 SET and MYND domain containing 3
SPI1 Spi-1 proto-oncogene
SRCAP Snf2-related CREBBP activator protein
SUDS3 suppressor of defective silencing 3 homolog (S. cerevisiae)
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae)
SUPT7L suppressor of Ty 7 (S. cerevisiae)-like
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila)
SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila)
SUV420H1 suppressor of variegation 4-20 homolog 1 (Drosophila)
SUV420H2 suppressor of variegation 4-20 homolog 2 (Drosophila)
SUZ12 SUZ12 polycomb repressive complex 2 subunit
TADA1 transcriptional adaptor 1
TADA2A transcriptional adaptor 2A
TADA3 transcriptional adaptor 3
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
TAF10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa
TAF1L TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like
TAF5 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa
TAF5L TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
TAF6L TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
TBL1X transducin (beta)-like 1X-linked
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1
TBL1Y transducin (beta)-like 1, Y-linked
TCF3 transcription factor 3
TET2 tet methylcytosine dioxygenase 2
TET3 tet methylcytosine dioxygenase 3
TRIM16 tripartite motif containing 16
TRIM37 tripartite motif containing 37
TRRAP transformation/transcription domain-associated protein
UBE2A ubiquitin-conjugating enzyme E2A
UBE2B ubiquitin-conjugating enzyme E2B
UBE2E1 ubiquitin-conjugating enzyme E2E 1
UBE2N ubiquitin-conjugating enzyme E2N
UBE2U ubiquitin-conjugating enzyme E2U (putative)
UBR2 ubiquitin protein ligase E3 component n-recognin 2
UHRF1 ubiquitin-like with PHD and ring finger domains 1
UIMC1 ubiquitin interaction motif containing 1
USP15 ubiquitin specific peptidase 15
USP16 ubiquitin specific peptidase 16
USP21 ubiquitin specific peptidase 21
USP22 ubiquitin specific peptidase 22
USP3 ubiquitin specific peptidase 3
USP49 ubiquitin specific peptidase 49
USP51 ubiquitin specific peptidase 51
USP7 ubiquitin specific peptidase 7 (herpes virus-associated)
UTY ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
VPRBP Vpr (HIV-1) binding protein
VRK1 vaccinia related kinase 1
WAC WW domain containing adaptor with coiled-coil
WDR5 WD repeat domain 5
WDR61 WD repeat domain 61
WDR82 WD repeat domain 82
WDR92 WD repeat domain 92
WHSC1 Wolf-Hirschhorn syndrome candidate 1
WHSC1L1 Wolf-Hirschhorn syndrome candidate 1-like 1
YEATS2 YEATS domain containing 2
YEATS4 YEATS domain containing 4
ZNF335 zinc finger protein 335