copi-coated vesicle Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A vesicle with a coat formed of the COPI coat complex proteins. COPI-coated vesicles are found associated with Golgi membranes at steady state, are involved in Golgi to endoplasmic reticulum (retrograde) vesicle transport, and possibly also in intra-Golgi transport. (Gene Ontology, GO_0030137)
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Genes

166 proteins co-occuring with the copi-coated vesicle cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
ARF1 ADP-ribosylation factor 1 2.45797
COPE coatomer protein complex, subunit epsilon 2.09473
COPB2 coatomer protein complex, subunit beta 2 (beta prime) 1.94251
ARFGAP2 ADP-ribosylation factor GTPase activating protein 2 1.52541
CDKN2A cyclin-dependent kinase inhibitor 2A 1.49153
COPA coatomer protein complex, subunit alpha 1.32438
ARFGAP3 ADP-ribosylation factor GTPase activating protein 3 1.28143
COPZ2 coatomer protein complex, subunit zeta 2 1.2236
ARF3 ADP-ribosylation factor 3 1.20653
GOLPH3 golgi phosphoprotein 3 (coat-protein) 1.09035
RAB1B RAB1B, member RAS oncogene family 1.08933
COPZ1 coatomer protein complex, subunit zeta 1 1.06094
RAP2B RAP2B, member of RAS oncogene family 1.06044
SAR1A secretion associated, Ras related GTPase 1A 1.05136
ARF4 ADP-ribosylation factor 4 1.04733
COPG1 coatomer protein complex, subunit gamma 1 1.02729
COPB1 coatomer protein complex, subunit beta 1 1.02629
SEC24D SEC24 family member D 1.00251
COPG2 coatomer protein complex, subunit gamma 2 0.996123
KCNK3 potassium channel, two pore domain subfamily K, member 3 0.976619
SCYL1 SCY1-like 1 (S. cerevisiae) 0.945432
ANXA4 annexin A4 0.927013
LMAN1 lectin, mannose-binding, 1 0.914842
BATF2 basic leucine zipper transcription factor, ATF-like 2 0.911113
ARF5 ADP-ribosylation factor 5 0.873186
KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 0.872726
ARFIP1 ADP-ribosylation factor interacting protein 1 0.845614
CYTH1 cytohesin 1 0.845614
TMED2 transmembrane emp24 domain trafficking protein 2 0.841023
SLC35F1 solute carrier family 35, member F1 0.805689
STPG1 sperm-tail PG-rich repeat containing 1 0.792396
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.785986
NSF N-ethylmaleimide-sensitive factor 0.768171
SEC13 SEC13 homolog (S. cerevisiae) 0.766804
RAB2A RAB2A, member RAS oncogene family 0.758615
SEC24B SEC24 family member B 0.728836
PLD1 phospholipase D1, phosphatidylcholine-specific 0.716346
PEX11B peroxisomal biogenesis factor 11 beta 0.715902
ARCN1 archain 1 0.667693
SEH1L SEH1-like (S. cerevisiae) 0.665962
SEC24C SEC24 family member C 0.661208
NUP85 nucleoporin 85kDa 0.658619
SEC23A Sec23 homolog A (S. cerevisiae) 0.642286
GPR15 G protein-coupled receptor 15 0.639289
RAB1A RAB1A, member RAS oncogene family 0.631598
TMED10 transmembrane emp24-like trafficking protein 10 (yeast) 0.627335
ADAR adenosine deaminase, RNA-specific 0.62393
LMAN2 lectin, mannose-binding 2 0.603174
NCDN neurochondrin 0.594753
PI4KA phosphatidylinositol 4-kinase, catalytic, alpha 0.583849
CTAGE5 CTAGE family, member 5 0.569664
AZIN1 antizyme inhibitor 1 0.542352
CAPN8 calpain 8 0.535772
KCNK9 potassium channel, two pore domain subfamily K, member 9 0.53454
NUP133 nucleoporin 133kDa 0.512455
ARF6 ADP-ribosylation factor 6 0.511233
PNPLA2 patatin-like phospholipase domain containing 2 0.505131
TGOLN2 trans-golgi network protein 2 0.503912
PDE4C phosphodiesterase 4C, cAMP-specific 0.493371
GNL1 guanine nucleotide binding protein-like 1 0.491348
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.48005
GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 0.476429
WDR36 WD repeat domain 36 0.469604
DNAJA2 DnaJ (Hsp40) homolog, subfamily A, member 2 0.464798
NUP37 nucleoporin 37kDa 0.463598
KLRC3 killer cell lectin-like receptor subfamily C, member 3 0.461998
ARAP1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 0.461998
HELB helicase (DNA) B 0.461199
KLC2 kinesin light chain 2 0.448451
ST6GAL1 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 0.444878
BNIP1 BCL2/adenovirus E1B 19kDa interacting protein 1 0.438937
CDC42 cell division cycle 42 0.43696
CDK13 cyclin-dependent kinase 13 0.434196
FLNB filamin B, beta 0.431829
TAPBP TAP binding protein (tapasin) 0.429859
RDH5 retinol dehydrogenase 5 (11-cis/9-cis) 0.421604
MIA3 melanoma inhibitory activity family, member 3 0.419252
AP2S1 adaptor-related protein complex 2, sigma 1 subunit 0.417685
CTBP1 C-terminal binding protein 1 0.415337
COG6 component of oligomeric golgi complex 6 0.414555
PLIN3 perilipin 3 0.404804
AP1S1 adaptor-related protein complex 1, sigma 1 subunit 0.398587
SH3KBP1 SH3-domain kinase binding protein 1 0.397035
COG5 component of oligomeric golgi complex 5 0.382739
STX5 syntaxin 5 0.37966
SSX2IP synovial sarcoma, X breakpoint 2 interacting protein 0.373899
RFK riboflavin kinase 0.371599
NUP107 nucleoporin 107kDa 0.370833
NAPG N-ethylmaleimide-sensitive factor attachment protein, gamma 0.369684
ARFRP1 ADP-ribosylation factor related protein 1 0.366241
EDF1 endothelial differentiation-related factor 1 0.361659
KLC3 kinesin light chain 3 0.354422
COG7 component of oligomeric golgi complex 7 0.335864
VAMP7 vesicle-associated membrane protein 7 0.333225
STX17 syntaxin 17 0.321201
MAP9 microtubule-associated protein 9 0.319328
GOLGA5 golgin A5 0.319328
MIA melanoma inhibitory activity 0.315212
BET1 Bet1 golgi vesicular membrane trafficking protein 0.311851
FTCD formimidoyltransferase cyclodeaminase 0.308867
SCFD1 sec1 family domain containing 1 0.308867
TRIM32 tripartite motif containing 32 0.304771
EBAG9 estrogen receptor binding site associated, antigen, 9 0.301797
RGS19 regulator of G-protein signaling 19 0.298826
STX18 syntaxin 18 0.29623
DBNL drebrin-like 0.294007
PMP2 peripheral myelin protein 2 0.286614
BICD2 bicaudal D homolog 2 (Drosophila) 0.285138
GOSR2 golgi SNAP receptor complex member 2 0.278141
GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 0.278141
CIDEC cell death-inducing DFFA-like effector c 0.274835
TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) 0.271167
ACE angiotensin I converting enzyme 0.267505
DBN1 drebrin 1 0.266408
RPL19 ribosomal protein L19 0.264581
PDE4B phosphodiesterase 4B, cAMP-specific 0.255834
DRD3 dopamine receptor D3 0.254743
COG8 component of oligomeric golgi complex 8 0.248216
KIF5C kinesin family member 5C 0.246046
GOLGA3 golgin A3 0.245685
DMRT1 doublesex and mab-3 related transcription factor 1 0.242437
SLC25A17 solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 0.241356
SCG3 secretogranin III 0.241356
BSCL2 Berardinelli-Seip congenital lipodystrophy 2 (seipin) 0.235966
RAB6A RAB6A, member RAS oncogene family 0.233817
PLIN2 perilipin 2 0.226686
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.224913
NUP153 nucleoporin 153kDa 0.217511
AHRR aryl-hydrocarbon receptor repressor 0.214366
RAC2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) 0.211587
CDK5R1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) 0.209513
FTSJ2 FtsJ RNA methyltransferase homolog 2 (E. coli) 0.207108
DDOST dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic) 0.206766
CAND1 cullin-associated and neddylation-dissociated 1 0.202009
RER1 retention in endoplasmic reticulum sorting receptor 1 0.196999
GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 0.196669
SCARF1 scavenger receptor class F, member 1 0.196339
HLA-B major histocompatibility complex, class I, B 0.19601
PGAM2 phosphoglycerate mutase 2 (muscle) 0.192746
NCS1 neuronal calcium sensor 1 0.191135
AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 0.190495
MRS2 MRS2 magnesium transporter 0.189222
RAB13 RAB13, member RAS oncogene family 0.183935
SREBF2 sterol regulatory element binding transcription factor 2 0.182122
CHPF chondroitin polymerizing factor 0.180339
CDK11A cyclin-dependent kinase 11A 0.179167
PDE4D phosphodiesterase 4D, cAMP-specific 0.178588
ARHGAP21 Rho GTPase activating protein 21 0.17687
RASD1 RAS, dexamethasone-induced 1 0.176024
TFR2 transferrin receptor 2 0.174361
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 0.173814
BICD1 bicaudal D homolog 1 (Drosophila) 0.173003
VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2) 0.173003
CANX calnexin 0.172735
CCNE1 cyclin E1 0.172201
FOXL2 forkhead box L2 0.170629
DCTN1 dynactin 1 0.169099
BPGM 2,3-bisphosphoglycerate mutase 0.167611
PGAM1 phosphoglycerate mutase 1 (brain) 0.166405
ERP29 endoplasmic reticulum protein 29 0.162546
VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa 0.161484
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4 0.160658
FIG4 FIG4 phosphoinositide 5-phosphatase 0.158882
PEX3 peroxisomal biogenesis factor 3 0.158502
GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) 0.158315
TPPP tubulin polymerization promoting protein 0.157943