cone cell pedicle Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A specialized axon terminus which is produced by retinal cone cells. Pedicles are large, conical, flat end-feet (8-10 micrometers diameter) of the retinal cone axon that lie more or less side by side on the same plane at the outer edge of the outer plexiform layer (OPL). (Gene Ontology, GO_0044316)
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Genes

62 proteins co-occuring with the cone cell pedicle cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
GRIK1 glutamate receptor, ionotropic, kainate 1 1.39684
VEZF1 vascular endothelial zinc finger 1 1.24707
GRIA4 glutamate receptor, ionotropic, AMPA 4 1.21842
RCVRN recoverin 1.19726
CPLX4 complexin 4 1.18851
BSN bassoon presynaptic cytomatrix protein 1.09238
CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit 1.07562
IQSEC3 IQ motif and Sec7 domain 3 1.07461
GJD2 gap junction protein, delta 2, 36kDa 1.066
HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 1.06094
IQSEC1 IQ motif and Sec7 domain 1 0.98683
FUT4 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) 0.965993
CABP1 calcium binding protein 1 0.952573
CPLX3 complexin 3 0.945907
NETO1 neuropilin (NRP) and tolloid (TLL)-like 1 0.905531
GRM6 glutamate receptor, metabotropic 6 0.851124
OPLAH 5-oxoprolinase (ATP-hydrolysing) 0.839187
CALB1 calbindin 1, 28kDa 0.836433
IQSEC2 IQ motif and Sec7 domain 2 0.799728
HCN3 hyperpolarization activated cyclic nucleotide gated potassium channel 3 0.736913
RGS11 regulator of G-protein signaling 11 0.692078
ARR3 arrestin 3, retinal (X-arrestin) 0.689451
TRPM1 transient receptor potential cation channel, subfamily M, member 1 0.674196
ANO2 anoctamin 2, calcium activated chloride channel 0.6638
CSAD cysteine sulfinic acid decarboxylase 0.662935
SCGN secretagogin, EF-hand calcium binding protein 0.661208
ASMT acetylserotonin O-methyltransferase 0.602752
DPEP1 dipeptidase 1 (renal) 0.593492
STX4 syntaxin 4 0.573411
CNR1 cannabinoid receptor 1 (brain) 0.570913
RGS7 regulator of G-protein signaling 7 0.540706
SHANK1 SH3 and multiple ankyrin repeat domains 1 0.511233
CPLX1 complexin 1 0.507977
GJA8 gap junction protein, alpha 8, 50kDa 0.505131
NKX2-1 NK2 homeobox 1 0.488923
PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta 0.471609
SLC17A7 solute carrier family 17 (vesicular glutamate transporter), member 7 0.438937
CCK cholecystokinin 0.427497
CTBP2 C-terminal binding protein 2 0.426711
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 0.398199
CAPNS1 calpain, small subunit 1 0.389296
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.378507
PANX1 pannexin 1 0.378507
GJC1 gap junction protein, gamma 1, 45kDa 0.347587
ANO1 anoctamin 1, calcium activated chloride channel 0.34645
KARS lysyl-tRNA synthetase 0.345692
GRIA1 glutamate receptor, ionotropic, AMPA 1 0.343799
FAAH fatty acid amide hydrolase 0.342664
DLG3 discs, large homolog 3 (Drosophila) 0.341907
DAG1 dystroglycan 1 (dystrophin-associated glycoprotein 1) 0.306632
NR0B1 nuclear receptor subfamily 0, group B, member 1 0.298455
GRM2 glutamate receptor, metabotropic 2 0.294378
GOT1 glutamic-oxaloacetic transaminase 1, soluble 0.225267
GPHN gephyrin 0.209513
GAD1 glutamate decarboxylase 1 (brain, 67kDa) 0.206423
SAG S-antigen; retina and pineal gland (arrestin) 0.196339
RHO rhodopsin 0.191456
GRM5 glutamate receptor, metabotropic 5 0.183631
SLC17A6 solute carrier family 17 (vesicular glutamate transporter), member 6 0.168598
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial 0.163641
GRM1 glutamate receptor, metabotropic 1 0.163641
SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2 0.157218