commissural pretectal domain Gene Set

Dataset Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles
Category transcriptomics
Type tissue
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Genes

332 genes with high or low expression in commissural pretectal domain relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
FCRL1 Fc receptor-like 1 2.01805
FFAR3 free fatty acid receptor 3 1.89623
PSD4 pleckstrin and Sec7 domain containing 4 1.80186
DSG4 desmoglein 4 1.75577
SPDEF SAM pointed domain containing ETS transcription factor 1.73914
SREK1 splicing regulatory glutamine/lysine-rich protein 1 1.69718
ZNF726 zinc finger protein 726 1.69554
NXT2 nuclear transport factor 2-like export factor 2 1.6778
ST18 suppression of tumorigenicity 18, zinc finger 1.67655
ADRA2B adrenoceptor alpha 2B 1.60665
BTN2A2 butyrophilin, subfamily 2, member A2 1.60434
RFX6 regulatory factor X, 6 1.59519
PAX3 paired box 3 1.58489
BCL10 B-cell CLL/lymphoma 10 1.57374
IKBKAP inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein 1.54851
RANBP6 RAN binding protein 6 1.54693
PHIP pleckstrin homology domain interacting protein 1.52948
BBS10 Bardet-Biedl syndrome 10 1.52881
HTR4 5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled 1.50342
TNF tumor necrosis factor 1.50311
SPO11 SPO11 meiotic protein covalently bound to DSB 1.48119
CDC23 cell division cycle 23 1.47996
C11ORF95 chromosome 11 open reading frame 95 1.46669
CXCL6 chemokine (C-X-C motif) ligand 6 1.4501
AGXT2 alanine--glyoxylate aminotransferase 2 1.4424
DDX41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 1.43682
PDE6C phosphodiesterase 6C, cGMP-specific, cone, alpha prime 1.43376
UBQLNL ubiquilin-like 1.43063
FXYD3 FXYD domain containing ion transport regulator 3 1.43015
MIB2 mindbomb E3 ubiquitin protein ligase 2 1.4284
TBC1D22A TBC1 domain family, member 22A 1.42297
SLCO4C1 solute carrier organic anion transporter family, member 4C1 1.41969
TST thiosulfate sulfurtransferase (rhodanese) 1.41199
ZNF566 zinc finger protein 566 1.40716
SYS1 Sys1 golgi trafficking protein 1.39819
TTC4 tetratricopeptide repeat domain 4 1.39423
NSUN7 NOP2/Sun domain family, member 7 1.39344
ZNF226 zinc finger protein 226 1.38379
OR2B11 olfactory receptor, family 2, subfamily B, member 11 1.38337
FBXO25 F-box protein 25 1.38045
RASL10A RAS-like, family 10, member A 1.37969
RWDD3 RWD domain containing 3 1.37677
USH2A Usher syndrome 2A (autosomal recessive, mild) 1.36793
MBD3 methyl-CpG binding domain protein 3 1.36235
CHORDC1 cysteine and histidine-rich domain (CHORD) containing 1 1.35958
LYST lysosomal trafficking regulator 1.35817
DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila) 1.35734
NSF N-ethylmaleimide-sensitive factor 1.35219
RLN1 relaxin 1 1.35097
ADGB androglobin 1.34891
PDS5A PDS5 cohesin associated factor A 1.33961
DSP desmoplakin 1.33889
SERPINI2 serpin peptidase inhibitor, clade I (pancpin), member 2 1.32952
PPIE peptidylprolyl isomerase E (cyclophilin E) 1.3207
KIAA0232 KIAA0232 1.31818
SLC25A42 solute carrier family 25, member 42 1.31017
PCGF5 polycomb group ring finger 5 1.30874
NUDT13 nudix (nucleoside diphosphate linked moiety X)-type motif 13 1.30104
SUCLG2 succinate-CoA ligase, GDP-forming, beta subunit 1.30049
OR6N1 olfactory receptor, family 6, subfamily N, member 1 1.29428
CRLF1 cytokine receptor-like factor 1 1.29331
CRY1 cryptochrome circadian clock 1 1.2841
CYP7B1 cytochrome P450, family 7, subfamily B, polypeptide 1 1.28405
ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 1.28098
COLEC10 collectin sub-family member 10 (C-type lectin) 1.27957
DDX4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 1.27587
ZNF467 zinc finger protein 467 1.27285
TTC16 tetratricopeptide repeat domain 16 1.26968
KLF13 Kruppel-like factor 13 1.26805
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 1.26186
KRTDAP keratinocyte differentiation-associated protein 1.26032
TDO2 tryptophan 2,3-dioxygenase 1.26011
DCPS decapping enzyme, scavenger 1.2587
C1ORF189 chromosome 1 open reading frame 189 1.25195
KRT81 keratin 81, type II 1.24813
RNF141 ring finger protein 141 1.24609
VWA3B von Willebrand factor A domain containing 3B 1.24609
IFT43 intraflagellar transport 43 1.24584
TRIM55 tripartite motif containing 55 1.23898
SF3A3 splicing factor 3a, subunit 3, 60kDa 1.23605
TRPC6 transient receptor potential cation channel, subfamily C, member 6 1.23212
REG1B regenerating islet-derived 1 beta 1.22854
KRT5 keratin 5, type II 1.22838
CCDC103 coiled-coil domain containing 103 1.22439
C2ORF81 chromosome 2 open reading frame 81 1.22413
NDUFS3 NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase) 1.21996
TMPRSS3 transmembrane protease, serine 3 1.21827
NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) 1.21582
CA3 carbonic anhydrase III 1.21433
OR1J1 olfactory receptor, family 1, subfamily J, member 1 1.21111
PLCB2 phospholipase C, beta 2 1.20791
SP1 Sp1 transcription factor 1.20497
ZBTB10 zinc finger and BTB domain containing 10 1.20493
CLP1 cleavage and polyadenylation factor I subunit 1 1.2032
STK32B serine/threonine kinase 32B 1.20313
RPL27 ribosomal protein L27 1.20137
ZNF496 zinc finger protein 496 1.19966
LRP6 low density lipoprotein receptor-related protein 6 1.19291
KCNJ11 potassium channel, inwardly rectifying subfamily J, member 11 1.1921
BPTF bromodomain PHD finger transcription factor 1.17666
BTBD16 BTB (POZ) domain containing 16 1.17454
MCM6 minichromosome maintenance complex component 6 1.17446
SHE Src homology 2 domain containing E 1.17321
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 1.17291
NAGLU N-acetylglucosaminidase, alpha 1.16964
ZFPM2 zinc finger protein, FOG family member 2 1.16627
C11ORF88 chromosome 11 open reading frame 88 1.16502
CTSA cathepsin A 1.16485
DCAF13 DDB1 and CUL4 associated factor 13 1.16327
C9ORF9 chromosome 9 open reading frame 9 1.1589
ANKRD44 ankyrin repeat domain 44 1.15702
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 1.15643
RPL17 ribosomal protein L17 1.15545
VAMP4 vesicle-associated membrane protein 4 1.15217
MIA melanoma inhibitory activity 1.15165
MARK2 MAP/microtubule affinity-regulating kinase 2 1.15145
ZBBX zinc finger, B-box domain containing 1.14909
LRRC16A leucine rich repeat containing 16A 1.14639
LSG1 large 60S subunit nuclear export GTPase 1 1.14434
ZNF175 zinc finger protein 175 1.1423
TRIT1 tRNA isopentenyltransferase 1 1.13936
IL10 interleukin 10 1.13923
WDR26 WD repeat domain 26 1.13919
TTPA tocopherol (alpha) transfer protein 1.13791
CHRNA3 cholinergic receptor, nicotinic, alpha 3 (neuronal) 1.13501
UBQLN2 ubiquilin 2 1.13353
GPBP1 GC-rich promoter binding protein 1 1.13271
CDH24 cadherin 24, type 2 1.13137
IFT122 intraflagellar transport 122 1.12954
CXXC1 CXXC finger protein 1 1.12251
RASSF1 Ras association (RalGDS/AF-6) domain family member 1 1.12184
MAU2 MAU2 sister chromatid cohesion factor 1.12009
LRRTM4 leucine rich repeat transmembrane neuronal 4 1.12008
GTSF1 gametocyte specific factor 1 1.11913
LCT lactase 1.10947
SHPRH SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase 1.10801
SLC25A34 solute carrier family 25, member 34 1.10711
SIN3B SIN3 transcription regulator family member B 1.10499
VPS45 vacuolar protein sorting 45 homolog (S. cerevisiae) 1.10298
SPIN4 spindlin family, member 4 1.09841
UGDH UDP-glucose 6-dehydrogenase 1.09167
C4ORF46 chromosome 4 open reading frame 46 1.0915
CLVS2 clavesin 2 1.0903
CERS6 ceramide synthase 6 1.08748
MFSD1 major facilitator superfamily domain containing 1 1.08325
PITX1 paired-like homeodomain 1 1.08098
RSL1D1 ribosomal L1 domain containing 1 1.07902
MARCH11 membrane-associated ring finger (C3HC4) 11 1.07582
GLIS3 GLIS family zinc finger 3 1.07411
ZNF205 zinc finger protein 205 1.07387
MYO1H myosin IH 1.07314
SPP2 secreted phosphoprotein 2, 24kDa 1.07182
RXRG retinoid X receptor, gamma 1.06974
EPHA7 EPH receptor A7 1.06841
PRDM5 PR domain containing 5 1.06645
IFT20 intraflagellar transport 20 1.06306
FAM104A family with sequence similarity 104, member A 1.06113
TNFAIP6 tumor necrosis factor, alpha-induced protein 6 1.05871
ZNF606 zinc finger protein 606 1.05723
KIAA1468 KIAA1468 1.05534
AJUBA ajuba LIM protein 1.05482
SAFB2 scaffold attachment factor B2 1.05211
GMNC geminin coiled-coil domain containing 1.04758
WIPF2 WAS/WASL interacting protein family, member 2 1.04676
NPR2 natriuretic peptide receptor 2 1.04559
CCDC169-SOHLH2 CCDC169-SOHLH2 readthrough 1.0437
FSIP1 fibrous sheath interacting protein 1 1.04089
OPLAH 5-oxoprolinase (ATP-hydrolysing) 1.04027
GSTCD glutathione S-transferase, C-terminal domain containing 1.03509
ARSJ arylsulfatase family, member J 1.03496
BZW1 basic leucine zipper and W2 domains 1 1.03404
PPP1R11 protein phosphatase 1, regulatory (inhibitor) subunit 11 1.03203
NLRC5 NLR family, CARD domain containing 5 1.03199
PLCG1 phospholipase C, gamma 1 1.03085
WIPI1 WD repeat domain, phosphoinositide interacting 1 1.03055
PCGF6 polycomb group ring finger 6 1.02899
LAPTM5 lysosomal protein transmembrane 5 1.02415
PKIB protein kinase (cAMP-dependent, catalytic) inhibitor beta 1.01421
PDCD1LG2 programmed cell death 1 ligand 2 1.01151
RNASE11 ribonuclease, RNase A family, 11 (non-active) 1.00635
ANXA10 annexin A10 1.00609
C4ORF47 chromosome 4 open reading frame 47 1.00401
HP haptoglobin 1.00069
ANG angiogenin, ribonuclease, RNase A family, 5 1.00052

low expression

Symbol Name Standardized Value
SLC45A2 solute carrier family 45, member 2 -1.99217
ZCCHC4 zinc finger, CCHC domain containing 4 -1.93062
GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 -1.84664
PKP3 plakophilin 3 -1.73685
SMYD1 SET and MYND domain containing 1 -1.73299
CNTD1 cyclin N-terminal domain containing 1 -1.65918
TNFRSF8 tumor necrosis factor receptor superfamily, member 8 -1.65032
TIMD4 T-cell immunoglobulin and mucin domain containing 4 -1.62445
ZRANB3 zinc finger, RAN-binding domain containing 3 -1.62234
NRAS neuroblastoma RAS viral (v-ras) oncogene homolog -1.61673
TLR8 toll-like receptor 8 -1.61487
NIPSNAP3A nipsnap homolog 3A (C. elegans) -1.61362
ALPK2 alpha-kinase 2 -1.58513
SERPINA5 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 -1.58476
ALKBH1 alkB, alkylation repair homolog 1 (E. coli) -1.5475
CEP152 centrosomal protein 152kDa -1.53754
EHF ets homologous factor -1.51435
FGF6 fibroblast growth factor 6 -1.51267
FOXA3 forkhead box A3 -1.51231
BRPF3 bromodomain and PHD finger containing, 3 -1.50432
CPXCR1 CPX chromosome region, candidate 1 -1.49203
POF1B premature ovarian failure, 1B -1.48869
ANTXRL anthrax toxin receptor-like -1.48701
ZNF446 zinc finger protein 446 -1.48446
OR11L1 olfactory receptor, family 11, subfamily L, member 1 -1.48252
MZF1 myeloid zinc finger 1 -1.48192
UNC119B unc-119 homolog B (C. elegans) -1.47419
FKBP11 FK506 binding protein 11, 19 kDa -1.47411
CCDC54 coiled-coil domain containing 54 -1.47071
NUAK1 NUAK family, SNF1-like kinase, 1 -1.46872
ADM adrenomedullin -1.46263
CREB3L3 cAMP responsive element binding protein 3-like 3 -1.45566
TRMT10A tRNA methyltransferase 10 homolog A (S. cerevisiae) -1.43536
TMEM117 transmembrane protein 117 -1.43232
WNT3 wingless-type MMTV integration site family, member 3 -1.41266
IPMK inositol polyphosphate multikinase -1.41137
GSDMA gasdermin A -1.40018
CENPH centromere protein H -1.38538
CD22 CD22 molecule -1.37061
ART3 ADP-ribosyltransferase 3 -1.36488
LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) -1.3541
DNAJC16 DnaJ (Hsp40) homolog, subfamily C, member 16 -1.35362
TLR1 toll-like receptor 1 -1.34502
CRLS1 cardiolipin synthase 1 -1.33678
ARHGAP25 Rho GTPase activating protein 25 -1.32805
OTOL1 otolin 1 -1.32311
NCAPG non-SMC condensin I complex, subunit G -1.32069
MEPE matrix extracellular phosphoglycoprotein -1.31863
CEP70 centrosomal protein 70kDa -1.31118
F9 coagulation factor IX -1.31072
TRIM27 tripartite motif containing 27 -1.29297
TSSK3 testis-specific serine kinase 3 -1.28544
MCRS1 microspherule protein 1 -1.28539
ARFIP1 ADP-ribosylation factor interacting protein 1 -1.26163
MED22 mediator complex subunit 22 -1.25485
EPS8L3 EPS8-like 3 -1.24983
MEI1 meiosis inhibitor 1 -1.24945
RFTN2 raftlin family member 2 -1.24895
NOG noggin -1.24657
ZNF503 zinc finger protein 503 -1.24571
BPIFA2 BPI fold containing family A, member 2 -1.24012
IL7 interleukin 7 -1.23405
MSGN1 mesogenin 1 -1.23283
HSCB HscB mitochondrial iron-sulfur cluster co-chaperone -1.23077
GOLGA4 golgin A4 -1.23023
EXOSC6 exosome component 6 -1.22776
APLF aprataxin and PNKP like factor -1.22603
CDCA7 cell division cycle associated 7 -1.22377
CDCA2 cell division cycle associated 2 -1.22325
TSSC4 tumor suppressing subtransferable candidate 4 -1.22142
RGSL1 regulator of G-protein signaling like 1 -1.22014
RAB2B RAB2B, member RAS oncogene family -1.2166
C10ORF10 chromosome 10 open reading frame 10 -1.20568
DIO3 deiodinase, iodothyronine, type III -1.19741
PRDX4 peroxiredoxin 4 -1.19735
MMP3 matrix metallopeptidase 3 -1.19592
NXPE4 neurexophilin and PC-esterase domain family, member 4 -1.19458
OR13G1 olfactory receptor, family 13, subfamily G, member 1 -1.19296
ZNF208 zinc finger protein 208 -1.19199
MS4A6A membrane-spanning 4-domains, subfamily A, member 6A -1.19087
CLIC5 chloride intracellular channel 5 -1.18557
FAM198A family with sequence similarity 198, member A -1.18541
ITIH1 inter-alpha-trypsin inhibitor heavy chain 1 -1.18276
DUSP2 dual specificity phosphatase 2 -1.18112
KCNV1 potassium channel, voltage gated modifier subfamily V, member 1 -1.17803
SDCBP2 syndecan binding protein (syntenin) 2 -1.17724
PLBD1 phospholipase B domain containing 1 -1.17339
TXN thioredoxin -1.17252
WDPCP WD repeat containing planar cell polarity effector -1.17134
LCK LCK proto-oncogene, Src family tyrosine kinase -1.16672
TWISTNB TWIST neighbor -1.15001
HYAL3 hyaluronoglucosaminidase 3 -1.1491
FGF19 fibroblast growth factor 19 -1.14664
JMJD4 jumonji domain containing 4 -1.1452
CRP C-reactive protein, pentraxin-related -1.14117
CYTIP cytohesin 1 interacting protein -1.14102
EPB42 erythrocyte membrane protein band 4.2 -1.1325
APCS amyloid P component, serum -1.12979
GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 -1.12757
SRPX sushi-repeat containing protein, X-linked -1.12472
TMEM101 transmembrane protein 101 -1.12415
CTLA4 cytotoxic T-lymphocyte-associated protein 4 -1.12022
PROCR protein C receptor, endothelial -1.11859
GBA glucosidase, beta, acid -1.11792
ZIC4 Zic family member 4 -1.10922
GRIN3B glutamate receptor, ionotropic, N-methyl-D-aspartate 3B -1.10082
AMICA1 adhesion molecule, interacts with CXADR antigen 1 -1.09387
GAB2 GRB2-associated binding protein 2 -1.09284
L3HYPDH L-3-hydroxyproline dehydratase (trans-) -1.09279
NDP Norrie disease (pseudoglioma) -1.09054
PGR progesterone receptor -1.08858
NME8 NME/NM23 family member 8 -1.08545
NSMCE1 non-SMC element 1 homolog (S. cerevisiae) -1.07445
NUF2 NUF2, NDC80 kinetochore complex component -1.0732
UBA7 ubiquitin-like modifier activating enzyme 7 -1.06779
PAFAH2 platelet-activating factor acetylhydrolase 2, 40kDa -1.06725
IL17F interleukin 17F -1.06119
HOXA6 homeobox A6 -1.06118
IL36B interleukin 36, beta -1.05354
ALDH1L2 aldehyde dehydrogenase 1 family, member L2 -1.04855
TMC2 transmembrane channel-like 2 -1.04721
SP8 Sp8 transcription factor -1.04649
ASB4 ankyrin repeat and SOCS box containing 4 -1.04479
CHRM4 cholinergic receptor, muscarinic 4 -1.04058
CXCL16 chemokine (C-X-C motif) ligand 16 -1.03977
OTOR otoraplin -1.03802
GNA14 guanine nucleotide binding protein (G protein), alpha 14 -1.0378
RBM44 RNA binding motif protein 44 -1.03701
BCORL1 BCL6 corepressor-like 1 -1.03578
ACACB acetyl-CoA carboxylase beta -1.0344
CREB3L2 cAMP responsive element binding protein 3-like 2 -1.03293
GCK glucokinase (hexokinase 4) -1.03135
ANGPT1 angiopoietin 1 -1.02886
TFEC transcription factor EC -1.02844
LRRC14 leucine rich repeat containing 14 -1.02683
ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide -1.02637
FAM76B family with sequence similarity 76, member B -1.02503
FAM129A family with sequence similarity 129, member A -1.02414
PCDHB14 protocadherin beta 14 -1.02117
AOC3 amine oxidase, copper containing 3 -1.0104
C5ORF63 chromosome 5 open reading frame 63 -1.01012
NIPBL Nipped-B homolog (Drosophila) -1.00948
HARS histidyl-tRNA synthetase -1.00735
YAP1 Yes-associated protein 1 -1.00683
MUC13 mucin 13, cell surface associated -1.00666
PEX5 peroxisomal biogenesis factor 5 -1.00624
EPX eosinophil peroxidase -1.0047
MNX1 motor neuron and pancreas homeobox 1 -1.00255