collagen type iii trimer Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A collagen homotrimer of alpha1(III) chains; type III collagen triple helices associate to form fibrils. (Gene Ontology, GO_0005586)
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Genes

98 proteins co-occuring with the collagen type iii trimer cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
FN1 fibronectin 1 1.79243
COL3A1 collagen, type III, alpha 1 1.69277
TGFB1 transforming growth factor, beta 1 1.20601
TNC tenascin C 1.19417
VWF von Willebrand factor 1.16389
DCN decorin 1.14853
MMP1 matrix metallopeptidase 1 1.06094
COMP cartilage oligomeric matrix protein 1.003
MMP2 matrix metallopeptidase 2 0.978559
MMP13 matrix metallopeptidase 13 0.900426
TIMP1 TIMP metallopeptidase inhibitor 1 0.879633
MMP9 matrix metallopeptidase 9 0.867206
CTGF connective tissue growth factor 0.759524
BGN biglycan 0.750904
SMAD2 SMAD family member 2 0.735115
MAMDC4 MAM domain containing 4 0.713682
TNMD tenomodulin 0.693832
MMP3 matrix metallopeptidase 3 0.685954
GDF7 growth differentiation factor 7 0.67463
FBXL20 F-box and leucine-rich repeat protein 20 0.655172
TGFB3 transforming growth factor, beta 3 0.632451
SPP1 secreted phosphoprotein 1 0.610355
DGKZ diacylglycerol kinase, zeta 0.574662
ACE angiotensin I converting enzyme 0.547297
COL14A1 collagen, type XIV, alpha 1 0.50879
F8 coagulation factor VIII, procoagulant component 0.499853
TSPAN2 tetraspanin 2 0.481661
HOXA3 homeobox A3 0.480453
HOXB3 homeobox B3 0.472412
GPNMB glycoprotein (transmembrane) nmb 0.472011
ELN elastin 0.471208
FGF2 fibroblast growth factor 2 (basic) 0.4676
HOXA11 homeobox A11 0.464397
LMX1B LIM homeobox transcription factor 1, beta 0.458803
BGLAP bone gamma-carboxyglutamate (gla) protein 0.451233
CHRND cholinergic receptor, nicotinic, delta (muscle) 0.450836
IGF1 insulin-like growth factor 1 (somatomedin C) 0.447259
COL1A1 collagen, type I, alpha 1 0.446069
GDF10 growth differentiation factor 10 0.441708
FBLN2 fibulin 2 0.430647
ACAN aggrecan 0.430253
SMAD3 SMAD family member 3 0.426711
LHB luteinizing hormone beta polypeptide 0.412601
TGFBR2 transforming growth factor, beta receptor II (70/80kDa) 0.41221
SLC7A4 solute carrier family 7, member 4 0.407919
MMP14 matrix metallopeptidase 14 (membrane-inserted) 0.398975
ALB albumin 0.385436
ZNF423 zinc finger protein 423 0.38428
CD44 CD44 molecule (Indian blood group) 0.374666
GP6 glycoprotein VI (platelet) 0.372749
AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) 0.369301
COL12A1 collagen, type XII, alpha 1 0.367006
TIMP3 TIMP metallopeptidase inhibitor 3 0.366241
AGTR1 angiotensin II receptor, type 1 0.361659
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.347967
COL1A2 collagen, type I, alpha 2 0.345314
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha 0.332848
ADGRG1 adhesion G protein-coupled receptor G1 0.330589
LAMA1 laminin, alpha 1 0.31783
SMAD6 SMAD family member 6 0.30924
CD68 CD68 molecule 0.285876
TIMP2 TIMP metallopeptidase inhibitor 2 0.279245
TSC22D3 TSC22 domain family, member 3 0.276671
PLCL1 phospholipase C-like 1 0.267505
PDGFB platelet-derived growth factor beta polypeptide 0.257289
FMOD fibromodulin 0.256197
ACTB actin, beta 0.252927
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.249664
POU2AF1 POU class 2 associating factor 1 0.242797
CTNNA3 catenin (cadherin-associated protein), alpha 3 0.239916
SEBOX SEBOX homeobox 0.237401
SMAD7 SMAD family member 7 0.235966
PLG plasminogen 0.235607
GPR15 G protein-coupled receptor 15 0.230245
ATG4C autophagy related 4C, cysteine peptidase 0.229532
ACTG1 actin gamma 1 0.228819
GNRH2 gonadotropin-releasing hormone 2 0.22173
IRF6 interferon regulatory factor 6 0.219617
MMP16 matrix metallopeptidase 16 (membrane-inserted) 0.215063
MYOF myoferlin 0.213669
EMILIN1 elastin microfibril interfacer 1 0.211587
SERPING1 serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 0.191777
MYH11 myosin, heavy chain 11, smooth muscle 0.191456
EFEMP1 EGF containing fibulin-like extracellular matrix protein 1 0.184241
MGP matrix Gla protein 0.17687
FURIN furin (paired basic amino acid cleaving enzyme) 0.175188
TGFBR1 transforming growth factor, beta receptor 1 0.174635
B4GALT1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 0.170114
SIX1 SIX homeobox 1 0.16935
SAT1 spermidine/spermine N1-acetyltransferase 1 0.169099
IFNB1 interferon, beta 1, fibroblast 0.167611
TIMP4 TIMP metallopeptidase inhibitor 4 0.16477
SMAD4 SMAD family member 4 0.162546
GGT2 gamma-glutamyltransferase 2 0.162117
TMTC1 transmembrane and tetratricopeptide repeat containing 1 0.161693
TIE1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 0.160254
HBEGF heparin-binding EGF-like growth factor 0.157943
PAK2 p21 protein (Cdc42/Rac)-activated kinase 2 0.157397