clear cell sarcoma Gene Set

Dataset DISEASES Text-mining Gene-Disease Assocation Evidence Scores
Category disease or phenotype associations
Type disease
Description A sarcoma that is characterized by solid nests and fascicles of tumor cells with clear cytoplasm and prominent nucleoli. It presents as a slow growing mass that especially affects tendons and aponeuroses and it is deeply situated. (Human Disease Ontology, DOID_4233)
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Genes

94 genes co-occuring with the disease clear cell sarcoma in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset.

Symbol Name Standardized Value
ATF1 activating transcription factor 1 2.621
EWSR1 EWS RNA-binding protein 1 2.56111
MITF microphthalmia-associated transcription factor 1.70952
MLANA melan-A 1.64532
CREB1 cAMP responsive element binding protein 1 1.31668
LATS1 large tumor suppressor kinase 1 1.19273
CCDC65 coiled-coil domain containing 65 1.07824
FLI1 Fli-1 proto-oncogene, ETS transcription factor 0.993596
FUS FUS RNA binding protein 0.933313
STK3 serine/threonine kinase 3 0.931242
WT1 Wilms tumor 1 0.915139
PPP1R1A protein phosphatase 1, regulatory (inhibitor) subunit 1A 0.904854
STK26 serine/threonine protein kinase 26 0.860999
TFE3 transcription factor binding to IGHM enhancer 3 0.854859
ENO2 enolase 2 (gamma, neuronal) 0.854859
F8A2 coagulation factor VIII-associated 2 0.81018
F8A1 coagulation factor VIII-associated 1 0.81018
KCTD12 potassium channel tetramerization domain containing 12 0.801154
CLEC18C C-type lectin domain family 18, member C 0.800333
FOXD2 forkhead box D2 0.792131
CLEC18A C-type lectin domain family 18, member A 0.790902
SH3RF1 SH3 domain containing ring finger 1 0.750457
SOX10 SRY (sex determining region Y)-box 10 0.743141
ARNT2 aryl-hydrocarbon receptor nuclear translocator 2 0.709572
TYR tyrosinase 0.699919
CD34 CD34 molecule 0.696707
ETV1 ets variant 1 0.67551
SYP synaptophysin 0.637495
ERBB3 erb-b2 receptor tyrosine kinase 3 0.6214
IGF2 insulin-like growth factor 2 0.583552
SS18 synovial sarcoma translocation, chromosome 18 0.580439
AGO2 argonaute RISC catalytic component 2 0.570718
B3GAT1 beta-1,3-glucuronyltransferase 1 0.547419
SRPR signal recognition particle receptor (docking protein) 0.545481
ANO1 anoctamin 1, calcium activated chloride channel 0.53928
RREB1 ras responsive element binding protein 1 0.534635
COLQ collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 0.534248
CD53 CD53 molecule 0.532314
PMEL premelanosome protein 0.529994
CLEC11A C-type lectin domain family 11, member A 0.521117
BHLHE40 basic helix-loop-helix family, member e40 0.520731
PDGFRA platelet-derived growth factor receptor, alpha polypeptide 0.51611
TP53 tumor protein p53 0.51534
ZNF410 zinc finger protein 410 0.508808
FZD2 frizzled class receptor 2 0.501909
MB myoglobin 0.499614
CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 0.493122
TRIM25 tripartite motif containing 25 0.459751
MET MET proto-oncogene, receptor tyrosine kinase 0.449194
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 0.43753
NEK2 NIMA-related kinase 2 0.422515
BAGE2 B melanoma antigen family, member 2 0.404557
NCAM1 neural cell adhesion molecule 1 0.400453
CD99 CD99 molecule 0.397098
WNT11 wingless-type MMTV integration site family, member 11 0.385193
REST RE1-silencing transcription factor 0.374438
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.365932
CD9 CD9 molecule 0.36187
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.357814
S100A11 S100 calcium binding protein A11 0.351923
POU5F1B POU class 5 homeobox 1B 0.339073
NRG1 neuregulin 1 0.338707
CAMK2B calcium/calmodulin-dependent protein kinase II beta 0.330295
UPK3A uroplakin 3A 0.324094
FGF9 fibroblast growth factor 9 0.32373
MCF2 MCF.2 cell line derived transforming sequence 0.318635
ERG v-ets avian erythroblastosis virus E26 oncogene homolog 0.30342
ADGRV1 adhesion G protein-coupled receptor V1 0.300533
CTNS cystinosin, lysosomal cystine transporter 0.299452
NEFL neurofilament, light polypeptide 0.290462
IFNA2 interferon, alpha 2 0.287593
HTN3 histatin 3 0.28151
CD24 CD24 molecule 0.266558
KRT8 keratin 8, type II 0.266558
NR4A1 nuclear receptor subfamily 4, group A, member 1 0.263722
PRAME preferentially expressed antigen in melanoma 0.260184
POU5F1 POU class 5 homeobox 1 0.254536
ZKSCAN7 zinc finger with KRAB and SCAN domains 7 0.24996
HES5 hes family bHLH transcription factor 5 0.241895
PRIMA1 proline rich membrane anchor 1 0.239101
PTPRC protein tyrosine phosphatase, receptor type, C 0.238054
CDR2 cerebellar degeneration-related protein 2, 62kDa 0.235616
SNRPN small nuclear ribonucleoprotein polypeptide N 0.233878
FBXO17 F-box protein 17 0.218034
HMOX2 heme oxygenase 2 0.20658
CDR1 cerebellar degeneration-related protein 1, 34kDa 0.202618
TPM3 tropomyosin 3 0.192031
NES nestin 0.191097
FDPS farnesyl diphosphate synthase 0.190168
ETV4 ets variant 4 0.187415
MSH3 mutS homolog 3 0.17896
FGFR1 fibroblast growth factor receptor 1 0.177301
TYRP1 tyrosinase-related protein 1 0.175411
MSH6 mutS homolog 6 0.175146