ciliary cytoplasm Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description All of the contents of a cilium, excluding the plasma membrane surrounding the cilium. (Gene Ontology, GO_0097014)
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Genes

137 proteins co-occuring with the ciliary cytoplasm cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 1.41362
DNAH9 dynein, axonemal, heavy chain 9 1.29317
GAS8 growth arrest-specific 8 1.22672
CCDC65 coiled-coil domain containing 65 1.16286
AKAP14 A kinase (PRKA) anchor protein 14 1.11072
IQCB1 IQ motif containing B1 1.10307
TTC25 tetratricopeptide repeat domain 25 1.05035
TUBA1A tubulin, alpha 1a 1.02829
DNAH5 dynein, axonemal, heavy chain 5 1.0238
SPAG6 sperm associated antigen 6 0.97953
ARL13B ADP-ribosylation factor-like 13B 0.976619
DNAH10 dynein, axonemal, heavy chain 10 0.956395
BBS7 Bardet-Biedl syndrome 7 0.955439
TCTN1 tectonic family member 1 0.916243
DNAI1 dynein, axonemal, intermediate chain 1 0.914842
CEP41 centrosomal protein 41kDa 0.913909
TRAF3IP1 TNF receptor-associated factor 3 interacting protein 1 0.911113
TTBK2 tau tubulin kinase 2 0.905067
TPGS1 tubulin polyglutamylase complex subunit 1 0.90089
DGAT2L6 diacylglycerol O-acyltransferase 2-like 6 0.890707
BBS4 Bardet-Biedl syndrome 4 0.867666
TTC8 tetratricopeptide repeat domain 8 0.835974
IFT22 intraflagellar transport 22 0.834597
RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1 0.829089
PPP1R7 protein phosphatase 1, regulatory subunit 7 0.818075
TCTN2 tectonic family member 2 0.814864
RPGR retinitis pigmentosa GTPase regulator 0.814405
IFT57 intraflagellar transport 57 0.813487
IFT172 intraflagellar transport 172 0.796979
MKS1 Meckel syndrome, type 1 0.779126
IFT88 intraflagellar transport 88 0.763617
BBS1 Bardet-Biedl syndrome 1 0.754983
AGTPBP1 ATP/GTP binding protein 1 0.749094
ARMC4 armadillo repeat containing 4 0.748189
DNAJB13 DnaJ (Hsp40) homolog, subfamily B, member 13 0.73018
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.725258
DNAAF1 dynein, axonemal, assembly factor 1 0.703507
C2CD3 C2 calcium-dependent domain containing 3 0.700423
IPPK inositol 1,3,4,5,6-pentakisphosphate 2-kinase 0.696465
FUZ fuzzy planar cell polarity protein 0.682463
INVS inversin 0.668559
TMEM216 transmembrane protein 216 0.661208
CCDC39 coiled-coil domain containing 39 0.658188
CCDC40 coiled-coil domain containing 40 0.656895
LCA5 Leber congenital amaurosis 5 0.652159
IGHV1-2 immunoglobulin heavy variable 1-2 0.650869
LRRC6 leucine rich repeat containing 6 0.650439
TTLL6 tubulin tyrosine ligase-like family member 6 0.65001
KIF17 kinesin family member 17 0.643572
B9D2 B9 protein domain 2 0.633305
DNAH14 dynein, axonemal, heavy chain 14 0.628187
DNAH12 dynein, axonemal, heavy chain 12 0.628187
CEP97 centrosomal protein 97kDa 0.617557
PLEKHN1 pleckstrin homology domain containing, family N member 1 0.616709
DNAH8 dynein, axonemal, heavy chain 8 0.609932
SHH sonic hedgehog 0.606973
RSPH1 radial spoke head 1 homolog (Chlamydomonas) 0.60655
B9D1 B9 protein domain 1 0.602331
RSPH6A radial spoke head 6 homolog A (Chlamydomonas) 0.601487
TTL tubulin tyrosine ligase 0.599802
HYDIN HYDIN, axonemal central pair apparatus protein 0.588875
APOPT1 apoptogenic 1, mitochondrial 0.588037
BBS5 Bardet-Biedl syndrome 5 0.583849
KIF27 kinesin family member 27 0.578416
CEP290 centrosomal protein 290kDa 0.575495
ARL6 ADP-ribosylation factor-like 6 0.573411
PACRG PARK2 co-regulated 0.555973
SSNA1 Sjogren syndrome nuclear autoantigen 1 0.546885
DNAI2 dynein, axonemal, intermediate chain 2 0.542352
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.523067
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.523067
WDR19 WD repeat domain 19 0.522659
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.522659
TUBA4A tubulin, alpha 4a 0.519389
BBS2 Bardet-Biedl syndrome 2 0.517348
GLI3 GLI family zinc finger 3 0.51694
TUBD1 tubulin, delta 1 0.515308
CC2D2A coiled-coil and C2 domain containing 2A 0.51327
EFHC1 EF-hand domain (C-terminal) containing 1 0.511233
RSPH4A radial spoke head 4 homolog A (Chlamydomonas) 0.502693
GLI2 GLI family zinc finger 2 0.497826
FRMD6 FERM domain containing 6 0.49661
MARK4 MAP/microtubule affinity-regulating kinase 4 0.476831
FNDC3A fibronectin type III domain containing 3A 0.474822
KIF3A kinesin family member 3A 0.474018
SPA17 sperm autoantigenic protein 17 0.4672
TMEM67 transmembrane protein 67 0.454019
HYLS1 hydrolethalus syndrome 1 0.444878
CEP164 centrosomal protein 164kDa 0.440916
DFNB31 deafness, autosomal recessive 31 0.430253
PRPH2 peripherin 2 (retinal degeneration, slow) 0.419644
ARL3 ADP-ribosylation factor-like 3 0.41886
LDB3 LIM domain binding 3 0.41221
ZNF77 zinc finger protein 77 0.400916
STIL SCL/TAL1 interrupting locus 0.390455
RAB3C RAB3C, member RAS oncogene family 0.385051
NPHP4 nephronophthisis 4 0.380429
ODF1 outer dense fiber of sperm tails 1 0.380045
IFT20 intraflagellar transport 20 0.372749
OFD1 oral-facial-digital syndrome 1 0.367388
CNTLN centlein, centrosomal protein 0.366241
NPHP1 nephronophthisis 1 (juvenile) 0.354042
CATSPER1 cation channel, sperm associated 1 0.346829
PCNT pericentrin 0.33511
RAB3B RAB3B, member RAS oncogene family 0.331342
NEDD9 neural precursor cell expressed, developmentally down-regulated 9 0.327956
KIF3B kinesin family member 3B 0.320826
PTMS parathymosin 0.318953
VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae) 0.31783
TMTC1 transmembrane and tetratricopeptide repeat containing 1 0.31596
MAPRE1 microtubule-associated protein, RP/EB family, member 1 0.312224
VANGL2 VANGL planar cell polarity protein 2 0.308867
PDP1 pyruvate dehyrogenase phosphatase catalytic subunit 1 0.308122
ROS1 ROS proto-oncogene 1 , receptor tyrosine kinase 0.304027
CD177 CD177 molecule 0.29994
PPL periplakin 0.29623
SSTR3 somatostatin receptor 3 0.294378
PKD1 polycystic kidney disease 1 (autosomal dominant) 0.281453
DGCR8 DGCR8 microprocessor complex subunit 0.278509
OSTC oligosaccharyltransferase complex subunit (non-catalytic) 0.2719
CDC34 cell division cycle 34 0.271167
ICK intestinal cell (MAK-like) kinase 0.25438
FOXJ1 forkhead box J1 0.252202
DISC1 disrupted in schizophrenia 1 0.247854
MPP5 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) 0.238119
ENTPD2 ectonucleoside triphosphate diphosphohydrolase 2 0.222436
MADCAM1 mucosal vascular addressin cell adhesion molecule 1 0.215063
AKAP1 A kinase (PRKA) anchor protein 1 0.209513
MYO1B myosin IB 0.209169
PHF12 PHD finger protein 12 0.208137
PRMT1 protein arginine methyltransferase 1 0.203699
RFX1 regulatory factor X, 1 (influences HLA class II expression) 0.183935
CRYGD crystallin, gamma D 0.182122
RAB3D RAB3D, member RAS oncogene family 0.164542
DROSHA drosha, ribonuclease type III 0.162763
AURKA aurora kinase A 0.158315
IL13 interleukin 13 0.157943