chromatin binding Gene Set

Dataset GO Molecular Function Annotations
Category structural or functional annotations
Type molecular function
Description Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. (Gene Ontology, GO_0003682)
External Link http://amigo.geneontology.org/amigo/term/GO:0003682
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Genes

442 genes performing the chromatin binding molecular function from the curated GO Molecular Function Annotations dataset.

Symbol Name
ACTB actin, beta
ACTL6A actin-like 6A
ADNP activity-dependent neuroprotector homeobox
AIRE autoimmune regulator
AJUBA ajuba LIM protein
ANKRD17 ankyrin repeat domain 17
APBB1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1
APTX aprataxin
AR androgen receptor
ARID1A AT rich interactive domain 1A (SWI-like)
ARID3A AT rich interactive domain 3A (BRIGHT-like)
ARID3C AT rich interactive domain 3C (BRIGHT-like)
ARID5A AT rich interactive domain 5A (MRF1-like)
ARX aristaless related homeobox
ASCL1 achaete-scute family bHLH transcription factor 1
ASF1A anti-silencing function 1A histone chaperone
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila)
ATAD2 ATPase family, AAA domain containing 2
ATAD2B ATPase family, AAA domain containing 2B
ATF2 activating transcription factor 2
ATOH1 atonal homolog 1 (Drosophila)
ATRX alpha thalassemia/mental retardation syndrome X-linked
ATXN1 ataxin 1
ATXN7 ataxin 7
BAHCC1 BAH domain and coiled-coil containing 1
BAHD1 bromo adjacent homology domain containing 1
BAP1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
BARX2 BARX homeobox 2
BAZ1B bromodomain adjacent to zinc finger domain, 1B
BCAS3 breast carcinoma amplified sequence 3
BCL6 B-cell CLL/lymphoma 6
BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
BEND6 BEN domain containing 6
BHLHE22 basic helix-loop-helix family, member e22
BRD2 bromodomain containing 2
BRD3 bromodomain containing 3
BRD4 bromodomain containing 4
C17ORF49 chromosome 17 open reading frame 49
C19ORF40 chromosome 19 open reading frame 40
CALCOCO1 calcium binding and coiled-coil domain 1
CAMTA2 calmodulin binding transcription activator 2
CBFA2T3 core-binding factor, runt domain, alpha subunit 2; translocated to, 3
CBX1 chromobox homolog 1
CBX2 chromobox homolog 2
CBX4 chromobox homolog 4
CBX5 chromobox homolog 5
CBX7 chromobox homolog 7
CCDC79 coiled-coil domain containing 79
CCNT1 cyclin T1
CDC45 cell division cycle 45
CDC5L cell division cycle 5-like
CDC6 cell division cycle 6
CDCA5 cell division cycle associated 5
CDK9 cyclin-dependent kinase 9
CEBPB CCAAT/enhancer binding protein (C/EBP), beta
CENPA centromere protein A
CENPB centromere protein B, 80kDa
CENPF centromere protein F, 350/400kDa
CHAF1A chromatin assembly factor 1, subunit A (p150)
CHAF1B chromatin assembly factor 1, subunit B (p60)
CHD4 chromodomain helicase DNA binding protein 4
CHD6 chromodomain helicase DNA binding protein 6
CHD7 chromodomain helicase DNA binding protein 7
CHD8 chromodomain helicase DNA binding protein 8
CIC capicua transcriptional repressor
CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
CLOCK clock circadian regulator
CRAMP1L Crm, cramped-like (Drosophila)
CREB3L1 cAMP responsive element binding protein 3-like 1
CREBBP CREB binding protein
CRX cone-rod homeobox
CTBP2 C-terminal binding protein 2
CTCF CCCTC-binding factor (zinc finger protein)
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CUX1 cut-like homeobox 1
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1
DHX30 DEAH (Asp-Glu-Ala-His) box helicase 30
DLX1 distal-less homeobox 1
DLX2 distal-less homeobox 2
DLX3 distal-less homeobox 3
DMAP1 DNA methyltransferase 1 associated protein 1
DMRT1 doublesex and mab-3 related transcription factor 1
DMTF1 cyclin D binding myb-like transcription factor 1
DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1
DNAJC2 DnaJ (Hsp40) homolog, subfamily C, member 2
DNMT1 DNA (cytosine-5-)-methyltransferase 1
DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha
DPPA2 developmental pluripotency associated 2
EBF2 early B-cell factor 2
EED embryonic ectoderm development
EGFR epidermal growth factor receptor
EGR2 early growth response 2
ELK1 ELK1, member of ETS oncogene family
ELK4 ELK4, ETS-domain protein (SRF accessory protein 1)
ELMSAN1 ELM2 and Myb/SANT-like domain containing 1
EOMES eomesodermin
EP300 E1A binding protein p300
EP400 E1A binding protein p400
ERCC6 excision repair cross-complementation group 6
ESR1 estrogen receptor 1
EYA3 EYA transcriptional coactivator and phosphatase 3
EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit
FABP1 fatty acid binding protein 1, liver
FANCM Fanconi anemia, complementation group M
FLI1 Fli-1 proto-oncogene, ETS transcription factor
FOXC2 forkhead box C2
FOXN4 forkhead box N4
FOXO1 forkhead box O1
FOXO3 forkhead box O3
GABPA GA binding protein transcription factor, alpha subunit 60kDa
GATA1 GATA binding protein 1 (globin transcription factor 1)
GATA2 GATA binding protein 2
GATA4 GATA binding protein 4
GATA6 GATA binding protein 6
GATAD2B GATA zinc finger domain containing 2B
GLI1 GLI family zinc finger 1
GLI2 GLI family zinc finger 2
GLI3 GLI family zinc finger 3
GMNC geminin coiled-coil domain containing
GON4L gon-4-like (C. elegans)
GPER1 G protein-coupled estrogen receptor 1
GRHL1 grainyhead-like 1 (Drosophila)
GRHL2 grainyhead-like 2 (Drosophila)
GRHL3 grainyhead-like 3 (Drosophila)
H1F0 H1 histone family, member 0
H1FOO H1 histone family, member O, oocyte-specific
H2AFY H2A histone family, member Y
H2AFY2 H2A histone family, member Y2
H2AFZ H2A histone family, member Z
H3F3C H3 histone, family 3C
HCFC1 host cell factor C1
HDAC1 histone deacetylase 1
HDAC2 histone deacetylase 2
HDAC3 histone deacetylase 3
HDAC7 histone deacetylase 7
HDGFRP2 hepatoma-derived growth factor-related protein 2
HES5 hes family bHLH transcription factor 5
HESX1 HESX homeobox 1
HHEX hematopoietically expressed homeobox
HINFP histone H4 transcription factor
HIRA histone cell cycle regulator
HIST1H1A histone cluster 1, H1a
HIST1H1B histone cluster 1, H1b
HIST1H1C histone cluster 1, H1c
HIST1H1D histone cluster 1, H1d
HIST1H1E histone cluster 1, H1e
HMG20A high mobility group 20A
HMG20B high mobility group 20B
HMGA2 high mobility group AT-hook 2
HMGB1 high mobility group box 1
HMGB2 high mobility group box 2
HMGB3 high mobility group box 3
HMGB4 high mobility group box 4
HMGN1 high mobility group nucleosome binding domain 1
HMGN2 high mobility group nucleosomal binding domain 2
HMGN3 high mobility group nucleosomal binding domain 3
HMGN4 high mobility group nucleosomal binding domain 4
HMGN5 high mobility group nucleosome binding domain 5
HMGXB4 HMG box domain containing 4
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2)
HOXC13 homeobox C13
HOXD10 homeobox D10
HOXD13 homeobox D13
HP1BP3 heterochromatin protein 1, binding protein 3
HSF1 heat shock transcription factor 1
IFT74 intraflagellar transport 74
ING2 inhibitor of growth family, member 2
ING5 inhibitor of growth family, member 5
INSM1 insulinoma-associated 1
ISL1 ISL LIM homeobox 1
JARID2 jumonji, AT rich interactive domain 2
JDP2 Jun dimerization protein 2
KAT2A K(lysine) acetyltransferase 2A
KAT6A K(lysine) acetyltransferase 6A
KDM1A lysine (K)-specific demethylase 1A
KDM5A lysine (K)-specific demethylase 5A
KDM8 lysine (K)-specific demethylase 8
KIAA0101 KIAA0101
KLHDC3 kelch domain containing 3
KMT2A lysine (K)-specific methyltransferase 2A
L3MBTL1 l(3)mbt-like 1 (Drosophila)
LDB1 LIM domain binding 1
LEF1 lymphoid enhancer-binding factor 1
LHX2 LIM homeobox 2
LMO2 LIM domain only 2 (rhombotin-like 1)
LOXL2 lysyl oxidase-like 2
LRWD1 leucine-rich repeats and WD repeat domain containing 1
MAZ MYC-associated zinc finger protein (purine-binding transcription factor)
MBD2 methyl-CpG binding domain protein 2
MBD3 methyl-CpG binding domain protein 3
MBD5 methyl-CpG binding domain protein 5
MBD6 methyl-CpG binding domain protein 6
MCMBP minichromosome maintenance complex binding protein
MECP2 methyl CpG binding protein 2
MED1 mediator complex subunit 1
MED12 mediator complex subunit 12
MEF2A myocyte enhancer factor 2A
MEF2C myocyte enhancer factor 2C
MEIOB meiosis specific with OB domains
MEIS1 Meis homeobox 1
MEIS3 Meis homeobox 3
MEN1 multiple endocrine neoplasia I
MEOX1 mesenchyme homeobox 1
MIER1 mesoderm induction early response 1, transcriptional regulator
MIER2 mesoderm induction early response 1, family member 2
MIER3 mesoderm induction early response 1, family member 3
MIS18BP1 MIS18 binding protein 1
MITF microphthalmia-associated transcription factor
MKRN1 makorin ring finger protein 1
MLH3 mutL homolog 3
MNT MAX network transcriptional repressor
MORF4L1 mortality factor 4 like 1
MPO myeloperoxidase
MSGN1 mesogenin 1
MSH6 mutS homolog 6
MTA1 metastasis associated 1
MTA2 metastasis associated 1 family, member 2
MTA3 metastasis associated 1 family, member 3
MUM1 melanoma associated antigen (mutated) 1
MYB v-myb avian myeloblastosis viral oncogene homolog
MYBL1 v-myb avian myeloblastosis viral oncogene homolog-like 1
MYBL2 v-myb avian myeloblastosis viral oncogene homolog-like 2
MYOD1 myogenic differentiation 1
MYOG myogenin (myogenic factor 4)
MYPOP Myb-related transcription factor, partner of profilin
MYSM1 Myb-like, SWIRM and MPN domains 1
NANOG Nanog homeobox
NAP1L2 nucleosome assembly protein 1-like 2
NCOA1 nuclear receptor coactivator 1
NCOA2 nuclear receptor coactivator 2
NCOA3 nuclear receptor coactivator 3
NCOA5 nuclear receptor coactivator 5
NCOA6 nuclear receptor coactivator 6
NCOR1 nuclear receptor corepressor 1
NCOR2 nuclear receptor corepressor 2
NELFA negative elongation factor complex member A
NEUROD1 neuronal differentiation 1
NEUROG1 neurogenin 1
NEUROG3 neurogenin 3
NFATC3 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
NIPBL Nipped-B homolog (Drosophila)
NKAP NFKB activating protein
NKX2-2 NK2 homeobox 2
NKX2-5 NK2 homeobox 5
NKX6-1 NK6 homeobox 1
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae)
NOTCH1 notch 1
NPM2 nucleophosmin/nucleoplasmin 2
NR5A1 nuclear receptor subfamily 5, group A, member 1
NSD1 nuclear receptor binding SET domain protein 1
NUP62 nucleoporin 62kDa
NUPR1 nuclear protein, transcriptional regulator, 1
ORC1 origin recognition complex, subunit 1
PAF1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
PATZ1 POZ (BTB) and AT hook containing zinc finger 1
PAX3 paired box 3
PAX6 paired box 6
PBRM1 polybromo 1
PBX2 pre-B-cell leukemia homeobox 2
PCGF2 polycomb group ring finger 2
PDX1 pancreatic and duodenal homeobox 1
PELP1 proline, glutamate and leucine rich protein 1
PER1 period circadian clock 1
PHC1 polyhomeotic homolog 1 (Drosophila)
PHF13 PHD finger protein 13
PHF21A PHD finger protein 21A
PHF8 PHD finger protein 8
PITX2 paired-like homeodomain 2
PKN1 protein kinase N1
PLAC8 placenta-specific 8
POLA1 polymerase (DNA directed), alpha 1, catalytic subunit
POLD1 polymerase (DNA directed), delta 1, catalytic subunit
POLE polymerase (DNA directed), epsilon, catalytic subunit
POLG polymerase (DNA directed), gamma
POLQ polymerase (DNA directed), theta
POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa
POLR3A polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
POLR3D polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
POU1F1 POU class 1 homeobox 1
POU4F2 POU class 4 homeobox 2
PPARG peroxisome proliferator-activated receptor gamma
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PRDM13 PR domain containing 13
PRDM8 PR domain containing 8
PRIMPOL primase and polymerase (DNA-directed)
PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit
PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit
PRKCB protein kinase C, beta
PRMT5 protein arginine methyltransferase 5
PROP1 PROP paired-like homeobox 1
PTF1A pancreas specific transcription factor, 1a
PYGO2 pygopus family PHD finger 2
RAG2 recombination activating gene 2
RAN RAN, member RAS oncogene family
RARA retinoic acid receptor, alpha
RBBP4 retinoblastoma binding protein 4
RBMX RNA binding motif protein, X-linked
RBPJ recombination signal binding protein for immunoglobulin kappa J region
RCC1 regulator of chromosome condensation 1
RCOR1 REST corepressor 1
RCOR2 REST corepressor 2
RCOR3 REST corepressor 3
REL v-rel avian reticuloendotheliosis viral oncogene homolog
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
RELB v-rel avian reticuloendotheliosis viral oncogene homolog B
RERE arginine-glutamic acid dipeptide (RE) repeats
REST RE1-silencing transcription factor
RFX4 regulatory factor X, 4 (influences HLA class II expression)
RING1 ring finger protein 1
RNF168 ring finger protein 168, E3 ubiquitin protein ligase
RNF169 ring finger protein 169
RNF2 ring finger protein 2
RNF20 ring finger protein 20, E3 ubiquitin protein ligase
RNF4 ring finger protein 4
RNF8 ring finger protein 8, E3 ubiquitin protein ligase
RPA1 replication protein A1, 70kDa
RUNX2 runt-related transcription factor 2
RUVBL2 RuvB-like AAA ATPase 2
RXRA retinoid X receptor, alpha
SAFB scaffold attachment factor B
SALL1 spalt-like transcription factor 1
SATB1 SATB homeobox 1
SATB2 SATB homeobox 2
SETSIP SET-like protein
SF3B1 splicing factor 3b, subunit 1, 155kDa
SHMT2 serine hydroxymethyltransferase 2 (mitochondrial)
SIN3A SIN3 transcription regulator family member A
SIN3B SIN3 transcription regulator family member B
SIRT2 sirtuin 2
SIRT6 sirtuin 6
SIRT7 sirtuin 7
SIX1 SIX homeobox 1
SKI SKI proto-oncogene
SKIL SKI-like proto-oncogene
SLC30A9 solute carrier family 30 (zinc transporter), member 9
SMAD2 SMAD family member 2
SMAD3 SMAD family member 3
SMAD4 SMAD family member 4
SMAD6 SMAD family member 6
SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
SMC1A structural maintenance of chromosomes 1A
SMC3 structural maintenance of chromosomes 3
SNAI2 snail family zinc finger 2
SNAPC4 small nuclear RNA activating complex, polypeptide 4, 190kDa
SOX10 SRY (sex determining region Y)-box 10
SOX14 SRY (sex determining region Y)-box 14
SOX15 SRY (sex determining region Y)-box 15
SOX2 SRY (sex determining region Y)-box 2
SOX9 SRY (sex determining region Y)-box 9
SP100 SP100 nuclear antigen
SP110 SP110 nuclear body protein
SP140 SP140 nuclear body protein
SP140L SP140 nuclear body protein-like
SP3 Sp3 transcription factor
SREBF1 sterol regulatory element binding transcription factor 1
SRF serum response factor (c-fos serum response element-binding transcription factor)
SSBP1 single-stranded DNA binding protein 1, mitochondrial
SSRP1 structure specific recognition protein 1
STAG1 stromal antigen 1
STAG2 stromal antigen 2
STAT5B signal transducer and activator of transcription 5B
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae)
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila)
SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila)
SUZ12 SUZ12 polycomb repressive complex 2 subunit
TADA2A transcriptional adaptor 2A
TADA2B transcriptional adaptor 2B
TAL1 T-cell acute lymphocytic leukemia 1
TCF3 transcription factor 3
TCF7 transcription factor 7 (T-cell specific, HMG-box)
TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box)
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TDRD3 tudor domain containing 3
TERF1 telomeric repeat binding factor (NIMA-interacting) 1
TERF2 telomeric repeat binding factor 2
TFAM transcription factor A, mitochondrial
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
TFAP2B transcription factor AP-2 beta (activating enhancer binding protein 2 beta)
TGIF1 TGFB-induced factor homeobox 1
THRA thyroid hormone receptor, alpha
THRB thyroid hormone receptor, beta
TICRR TOPBP1-interacting checkpoint and replication regulator
TLE1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)
TLE4 transducin-like enhancer of split 4
TNRC18 trinucleotide repeat containing 18
TOP1 topoisomerase (DNA) I
TOP2A topoisomerase (DNA) II alpha 170kDa
TOP2B topoisomerase (DNA) II beta 180kDa
TOX thymocyte selection-associated high mobility group box
TOX2 TOX high mobility group box family member 2
TOX3 TOX high mobility group box family member 3
TOX4 TOX high mobility group box family member 4
TP53 tumor protein p53
TP63 tumor protein p63
TP73 tumor protein p73
TPR translocated promoter region, nuclear basket protein
TRERF1 transcriptional regulating factor 1
TRIM24 tripartite motif containing 24
TRIM37 tripartite motif containing 37
TSHZ3 teashirt zinc finger homeobox 3
TTC5 tetratricopeptide repeat domain 5
TTF1 transcription termination factor, RNA polymerase I
TWIST2 twist family bHLH transcription factor 2
UBE2T ubiquitin-conjugating enzyme E2T
UBTF upstream binding transcription factor, RNA polymerase I
UHRF1 ubiquitin-like with PHD and ring finger domains 1
UPF1 UPF1 regulator of nonsense transcripts homolog (yeast)
URI1 URI1, prefoldin-like chaperone
USP3 ubiquitin specific peptidase 3
UXT ubiquitously-expressed, prefoldin-like chaperone
VAX1 ventral anterior homeobox 1
VAX2 ventral anterior homeobox 2
VCX variable charge, X-linked
VRK1 vaccinia related kinase 1
WAC WW domain containing adaptor with coiled-coil
WBP2 WW domain binding protein 2
WDHD1 WD repeat and HMG-box DNA binding protein 1
WDR82 WD repeat domain 82
WHSC1 Wolf-Hirschhorn syndrome candidate 1
YAP1 Yes-associated protein 1
YBX2 Y box binding protein 2
ZEB1 zinc finger E-box binding homeobox 1
ZIC2 Zic family member 2
ZKSCAN2 zinc finger with KRAB and SCAN domains 2
ZKSCAN3 zinc finger with KRAB and SCAN domains 3
ZNF431 zinc finger protein 431
ZNF541 zinc finger protein 541
ZNHIT1 zinc finger, HIT-type containing 1
ZSCAN20 zinc finger and SCAN domain containing 20
ZZZ3 zinc finger, ZZ-type containing 3