cell type cancer Gene Set

Dataset GWASdb SNP-Disease Associations
Category disease or phenotype associations
Type disease
Description A cancer that is classified by the type of cell from which it is derived. (Human Disease Ontology, DOID_0050687)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/DOID:0050687
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Genes

173 genes associated with the disease cell type cancer in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.

Symbol Name Standardized Value
FUT6 fucosyltransferase 6 (alpha (1,3) fucosyltransferase) 2.65125
FUT2 fucosyltransferase 2 (secretor status included) 2.46647
ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) 2.05798
IRF4 interferon regulatory factor 4 1.56044
FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) 1.38571
FAM3B family with sequence similarity 3, member B 0.765257
RASIP1 Ras interacting protein 1 0.633863
AFP alpha-fetoprotein 0.583311
MGMT O-6-methylguanine-DNA methyltransferase 0.52854
PPIP5K1 diphosphoinositol pentakisphosphate kinase 1 0.4826
DBP D site of albumin promoter (albumin D-box) binding protein 0.479005
SEC1P secretory blood group 1, pseudogene 0.477891
FUT1 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group) 0.46606
RPL18 ribosomal protein L18 0.456934
SULT2B1 sulfotransferase family, cytosolic, 2B, member 1 0.455466
B3GNT3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 0.441012
DCC DCC netrin 1 receptor 0.419583
SASH1 SAM and SH3 domain containing 1 0.394268
PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent) 0.39257
DOCK1 dedicator of cytokinesis 1 0.392443
MAP1A microtubule-associated protein 1A 0.389662
CA11 carbonic anhydrase XI 0.388037
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 0.386999
TP53BP1 tumor protein p53 binding protein 1 0.385142
NID1 nidogen 1 0.383582
MTAP methylthioadenosine phosphorylase 0.378383
CRTAM cytotoxic and regulatory T cell molecule 0.366133
RASGRF2 Ras protein-specific guanine nucleotide-releasing factor 2 0.348395
PVT1 Pvt1 oncogene (non-protein coding) 0.346857
SDK1 sidekick cell adhesion molecule 1 0.345856
SLC7A14 solute carrier family 7, member 14 0.335055
APBA2 amyloid beta (A4) precursor protein-binding, family A, member 2 0.328204
USP10 ubiquitin specific peptidase 10 0.328204
KAT2B K(lysine) acetyltransferase 2B 0.32603
THRB thyroid hormone receptor, beta 0.324647
LINC00189 long intergenic non-protein coding RNA 189 0.323957
LINGO2 leucine rich repeat and Ig domain containing 2 0.323774
PLGRKT plasminogen receptor, C-terminal lysine transmembrane protein 0.322908
ABCC1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 0.320647
SND1 staphylococcal nuclease and tudor domain containing 1 0.320547
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) 0.319373
CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit 0.318774
MMP14 matrix metallopeptidase 14 (membrane-inserted) 0.318339
OGFRL1 opioid growth factor receptor-like 1 0.31671
FRMD8 FERM domain containing 8 0.316455
GRIK2 glutamate receptor, ionotropic, kainate 2 0.31512
PIP5K1B phosphatidylinositol-4-phosphate 5-kinase, type I, beta 0.314217
CEP350 centrosomal protein 350kDa 0.313891
PCSK6 proprotein convertase subtilisin/kexin type 6 0.313573
IQSEC3 IQ motif and Sec7 domain 3 0.311787
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.311509
ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 0.309772
MAN1B1 mannosidase, alpha, class 1B, member 1 0.309287
LOC146513 uncharacterized LOC146513 0.308894
SHROOM3 shroom family member 3 0.308894
ZMYND15 zinc finger, MYND-type containing 15 0.307991
TTYH1 tweety family member 1 0.306397
LOC100507195 uncharacterized LOC100507195 0.306097
ETV1 ets variant 1 0.305399
BTNL2 butyrophilin-like 2 0.30359
ALKBH6 alkB, alkylation repair homolog 6 (E. coli) 0.302197
FBXO33 F-box protein 33 0.300667
PPP4R1L protein phosphatase 4, regulatory subunit 1-like (pseudogene) 0.300608
CLIP3 CAP-GLY domain containing linker protein 3 0.300203
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.299695
ETV6 ets variant 6 0.299584
PTPRJ protein tyrosine phosphatase, receptor type, J 0.298511
SHC4 SHC (Src homology 2 domain containing) family, member 4 0.297497
SCARB1 scavenger receptor class B, member 1 0.29735
PTPRO protein tyrosine phosphatase, receptor type, O 0.29594
PAQR5 progestin and adipoQ receptor family member V 0.29585
GPA33 glycoprotein A33 (transmembrane) 0.295805
ANKRD17 ankyrin repeat domain 17 0.29576
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) 0.295188
NFIB nuclear factor I/B 0.294802
AIFM2 apoptosis-inducing factor, mitochondrion-associated, 2 0.294717
SP100 SP100 nuclear antigen 0.294466
VWF von Willebrand factor 0.293973
GTSF1 gametocyte specific factor 1 0.29322
RNF168 ring finger protein 168, E3 ubiquitin protein ligase 0.29295
USP34 ubiquitin specific peptidase 34 0.292835
FAM13A family with sequence similarity 13, member A 0.292534
DPH6 diphthamine biosynthesis 6 0.292311
ACOXL acyl-CoA oxidase-like 0.291377
FOXP1 forkhead box P1 0.291202
MRPL23 mitochondrial ribosomal protein L23 0.291202
ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 0.290389
PPA2 pyrophosphatase (inorganic) 2 0.288475
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 0.287719
DFNA5 deafness, autosomal dominant 5 0.287048
DLG2 discs, large homolog 2 (Drosophila) 0.286035
PARK2 parkin RBR E3 ubiquitin protein ligase 0.285804
GNAI1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 0.285753
NUDT3 nudix (nucleoside diphosphate linked moiety X)-type motif 3 0.285626
PITPNM3 PITPNM family member 3 0.28555
DOCK5 dedicator of cytokinesis 5 0.285201
CDH23 cadherin-related 23 0.284883
DGKI diacylglycerol kinase, iota 0.284334
TMEM222 transmembrane protein 222 0.28424
CEP128 centrosomal protein 128kDa 0.283804
DAB1 Dab, reelin signal transducer, homolog 1 (Drosophila) 0.282812
PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive) 0.282705
GABRB1 gamma-aminobutyric acid (GABA) A receptor, beta 1 0.282413
AADACL3 arylacetamide deacetylase-like 3 0.282202
LNX1 ligand of numb-protein X 1, E3 ubiquitin protein ligase 0.282098
ARID1A AT rich interactive domain 1A (SWI-like) 0.281231
INSC inscuteable homolog (Drosophila) 0.280934
LOXHD1 lipoxygenase homology domains 1 0.280519
MARCH1 membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase 0.280471
MTHFR methylenetetrahydrofolate reductase (NAD(P)H) 0.28016
PPIH peptidylprolyl isomerase H (cyclophilin H) 0.280065
TRAM2 translocation associated membrane protein 2 0.280041
SLIT3 slit homolog 3 (Drosophila) 0.279994
MROH2A maestro heat-like repeat family member 2A 0.2799
RAI1 retinoic acid induced 1 0.279806
MTUS1 microtubule associated tumor suppressor 1 0.279436
ADGRB3 adhesion G protein-coupled receptor B3 0.279413
ONECUT2 one cut homeobox 2 0.278758
ZNF395 zinc finger protein 395 0.278736
JAG1 jagged 1 0.276031
CCDC3 coiled-coil domain containing 3 0.275453
KDM1A lysine (K)-specific demethylase 1A 0.271019
HTR4 5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled 0.267626
WWOX WW domain containing oxidoreductase 0.266608
SIM1 single-minded family bHLH transcription factor 1 0.264826
MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 0.264826
NELL1 NEL-like 1 (chicken) 0.263292
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 0.263082
SYK spleen tyrosine kinase 0.258852
FHIT fragile histidine triad 0.258852
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 0.257971
CNTNAP2 contactin associated protein-like 2 0.25659
PREX2 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 0.255119
GALNT5 polypeptide N-acetylgalactosaminyltransferase 5 0.25454
MMP2 matrix metallopeptidase 2 0.251552
SOX5 SRY (sex determining region Y)-box 5 0.249756
OPCML opioid binding protein/cell adhesion molecule-like 0.249231
RPS6KA2 ribosomal protein S6 kinase, 90kDa, polypeptide 2 0.248654
TAF3 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa 0.246082
SAMD4A sterile alpha motif domain containing 4A 0.246082
GALNT13 polypeptide N-acetylgalactosaminyltransferase 13 0.245969
AQR aquarius intron-binding spliceosomal factor 0.245969
ATRNL1 attractin-like 1 0.245969
FGF14 fibroblast growth factor 14 0.245913
CNTN4 contactin 4 0.241629
ZBTB46 zinc finger and BTB domain containing 46 0.241352
POLE polymerase (DNA directed), epsilon, catalytic subunit 0.241169
STRN4 striatin, calmodulin binding protein 4 0.240808
TPTE2 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 0.240321
EIF3L eukaryotic translation initiation factor 3, subunit L 0.237639
ITSN1 intersectin 1 (SH3 domain protein) 0.237026
HS6ST3 heparan sulfate 6-O-sulfotransferase 3 0.236688
UBE2E2 ubiquitin-conjugating enzyme E2E 2 0.236355
SLC36A4 solute carrier family 36 (proton/amino acid symporter), member 4 0.236136
IRAK3 interleukin-1 receptor-associated kinase 3 0.235776
USP47 ubiquitin specific peptidase 47 0.235107
BCR breakpoint cluster region 0.234457
LOC643406 uncharacterized LOC643406 0.234156
SORCS3 sortilin-related VPS10 domain containing receptor 3 0.233181
PCSK5 proprotein convertase subtilisin/kexin type 5 0.232991
COL25A1 collagen, type XXV, alpha 1 0.231824
RASGRP3 RAS guanyl releasing protein 3 (calcium and DAG-regulated) 0.231764
GRIK4 glutamate receptor, ionotropic, kainate 4 0.230859
GPC5 glypican 5 0.230688
ASIC2 acid sensing (proton gated) ion channel 2 0.230294
CAMK4 calcium/calmodulin-dependent protein kinase IV 0.230099
PTPRG protein tyrosine phosphatase, receptor type, G 0.229565
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 0.228755
CRYL1 crystallin, lambda 1 0.228083
FTO fat mass and obesity associated 0.228
NPAS3 neuronal PAS domain protein 3 0.227563
RPTOR regulatory associated protein of MTOR, complex 1 0.227401
TSPEAR thrombospondin-type laminin G domain and EAR repeats 0.22607