callus culture Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description The callus culture is a technique of tissue culture, it is usually carried out on solidified gel medium in the presence of growth regulators and initiated by inoculation of small explants or sections from established organ or other cultures (the inocula). Plant cell calluses may be made to differentiate into the specialized tissues of a whole new plant, with the addition of a number of hormones or enzymes. This is an ability known as totipotency. Callus cultures can be indefinitely maintained through regular sub-culturing. (BRENDA Tissue and Enzyme Source Ontology, BTO_0004361)
Similar Terms
Downloads & Tools

Genes

103 proteins co-occuring with the tissue callus culture in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
IDI2 isopentenyl-diphosphate delta isomerase 2 1.39467
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 1.36769
CTU1 cytosolic thiouridylase subunit 1 1.30613
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 1.04664
HIST2H3D histone cluster 2, H3d 1.03917
HIST2H3C histone cluster 2, H3c 1.03917
HIST2H3A histone cluster 2, H3a 1.03917
MAPK6 mitogen-activated protein kinase 6 0.993249
ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 0.977182
HLF hepatic leukemia factor 0.944366
IDI1 isopentenyl-diphosphate delta isomerase 1 0.940066
ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 0.91052
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.892223
ADH6 alcohol dehydrogenase 6 (class V) 0.891374
LCMT2 leucine carboxyl methyltransferase 2 0.798541
DHPS deoxyhypusine synthase 0.772344
LPCAT3 lysophosphatidylcholine acyltransferase 3 0.766125
CAT catalase 0.752884
GLB1 galactosidase, beta 1 0.752884
MUC5B mucin 5B, oligomeric mucus/gel-forming 0.736382
BAIAP2 BAI1-associated protein 2 0.735971
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 0.725685
AMT aminomethyltransferase 0.725685
GLDC glycine dehydrogenase (decarboxylating) 0.72322
MIER1 mesoderm induction early response 1, transcriptional regulator 0.707631
BOLL boule-like RNA-binding protein 0.704355
HIST1H2AJ histone cluster 1, H2aj 0.678617
HIST1H2AD histone cluster 1, H2ad 0.678617
HIST1H2AH histone cluster 1, H2ah 0.67821
H2AFJ H2A histone family, member J 0.677395
H2AFY2 H2A histone family, member Y2 0.67495
HIST1H2AM histone cluster 1, H2am 0.672913
H2AFB1 H2A histone family, member B1 0.672506
H2AFB2 H2A histone family, member B2 0.672506
H2AFV H2A histone family, member V 0.6721
SRRM2 serine/arginine repetitive matrix 2 0.671692
HIST1H2AG histone cluster 1, H2ag 0.671285
KIN Kin17 DNA and RNA binding protein 0.670471
SOD2 superoxide dismutase 2, mitochondrial 0.668843
HIST1H2AE histone cluster 1, H2ae 0.665182
HIST1H2AB histone cluster 1, H2ab 0.665182
FBP1 fructose-1,6-bisphosphatase 1 0.658272
GML glycosylphosphatidylinositol anchored molecule like 0.658272
SIRT5 sirtuin 5 0.653807
SIRT7 sirtuin 7 0.645695
H2AFY H2A histone family, member Y 0.644479
ELOVL6 ELOVL fatty acid elongase 6 0.631527
SIRT4 sirtuin 4 0.628697
MRS2 MRS2 magnesium transporter 0.603697
CKAP2 cytoskeleton associated protein 2 0.60249
MPG N-methylpurine-DNA glycosylase 0.58322
ARAF A-Raf proto-oncogene, serine/threonine kinase 0.577615
MAT1A methionine adenosyltransferase I, alpha 0.569622
SIRT6 sirtuin 6 0.563238
TYR tyrosinase 0.561245
MGAM maltase-glucoamylase 0.549312
GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 0.54217
WNT10A wingless-type MMTV integration site family, member 10A 0.525166
FANCD2 Fanconi anemia, complementation group D2 0.520435
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 0.508635
PGD phosphogluconate dehydrogenase 0.499223
ISG20 interferon stimulated exonuclease gene 20kDa 0.496874
AGPS alkylglycerone phosphate synthase 0.495309
ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 0.494136
GALP galanin-like peptide 0.485156
MDH1 malate dehydrogenase 1, NAD (soluble) 0.484376
GSR glutathione reductase 0.473092
F9 coagulation factor IX 0.464948
SKAP2 src kinase associated phosphoprotein 2 0.460305
SIRT3 sirtuin 3 0.460305
CSTB cystatin B (stefin B) 0.451428
HIST1H3J histone cluster 1, H3j 0.436055
HIST1H3G histone cluster 1, H3g 0.436055
HIST1H3I histone cluster 1, H3i 0.436055
HIST1H3D histone cluster 1, H3d 0.436055
HIST1H3F histone cluster 1, H3f 0.436055
HIST1H3B histone cluster 1, H3b 0.435289
SULT1E1 sulfotransferase family 1E, estrogen-preferring, member 1 0.433374
SIRT2 sirtuin 2 0.428018
ACPP acid phosphatase, prostate 0.422292
CSF2RA colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) 0.418099
FDPS farnesyl diphosphate synthase 0.409731
CAMK2B calcium/calmodulin-dependent protein kinase II beta 0.3976
HIST1H3E histone cluster 1, H3e 0.397222
EN1 engrailed homeobox 1 0.388912
IPP intracisternal A particle-promoted polypeptide 0.38665
HIST1H3C histone cluster 1, H3c 0.38326
HIST1H3H histone cluster 1, H3h 0.382884
HIST1H3A histone cluster 1, H3a 0.376494
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 0.36825
GLUL glutamate-ammonia ligase 0.356686
CYCS cytochrome c, somatic 0.348148
MUSTN1 musculoskeletal, embryonic nuclear protein 1 0.347408
SLC25A16 solute carrier family 25 (mitochondrial carrier), member 16 0.318042
SORD sorbitol dehydrogenase 0.287092
ENO1 enolase 1, (alpha) 0.276495
C6ORF25 chromosome 6 open reading frame 25 0.276145
MMP10 matrix metallopeptidase 10 0.264353
GUSB glucuronidase, beta 0.237216
PGK1 phosphoglycerate kinase 1 0.235457
HIST2H2AC histone cluster 2, H2ac 0.23011
HIST2H2AA3 histone cluster 2, H2aa3 0.229568
HIST2H2AA4 histone cluster 2, H2aa4 0.229568