biogenesis Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

375 genes co-occuring with the biological term biogenesis in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1
ABCA3 ATP-binding cassette, sub-family A (ABC1), member 3
ABCD1 ATP-binding cassette, sub-family D (ALD), member 1
ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group)
ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif, 10
ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif, 13
ADAR adenosine deaminase, RNA-specific
ADARB1 adenosine deaminase, RNA-specific, B1
ADRA1A adrenoceptor alpha 1A
ADRB1 adrenoceptor beta 1
ADRBK1 adrenergic, beta, receptor kinase 1
AFF2 AF4/FMR2 family, member 2
AFF3 AF4/FMR2 family, member 3
AFF4 AF4/FMR2 family, member 4
AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
AKT1 v-akt murine thymoma viral oncogene homolog 1
ANK3 ankyrin 3, node of Ranvier (ankyrin G)
ANKRD13C ankyrin repeat domain 13C
ANXA2 annexin A2
APLN apelin
APOA1 apolipoprotein A-I
APOA4 apolipoprotein A-IV
APOC3 apolipoprotein C-III
APOE apolipoprotein E
APP amyloid beta (A4) precursor protein
AQP1 aquaporin 1 (Colton blood group)
ARF1 ADP-ribosylation factor 1
ARF6 ADP-ribosylation factor 6
ARL13B ADP-ribosylation factor-like 13B
ARRB1 arrestin, beta 1
ATG13 autophagy related 13
ATG9A autophagy related 9A
ATP13A2 ATPase type 13A2
ATP6AP2 ATPase, H+ transporting, lysosomal accessory protein 2
BACE1 beta-site APP-cleaving enzyme 1
BCAP31 B-cell receptor-associated protein 31
BCL2 B-cell CLL/lymphoma 2
BLOC1S1 biogenesis of lysosomal organelles complex-1, subunit 1
BLOC1S2 biogenesis of lysosomal organelles complex-1, subunit 2
BLOC1S6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
BMP2 bone morphogenetic protein 2
BMS1 BMS1 ribosome biogenesis factor
BOLA3 bolA family member 3
BRCA1 breast cancer 1, early onset
BYSL bystin-like
C11ORF31 chromosome 11 open reading frame 31
C14ORF169 chromosome 14 open reading frame 169
C9ORF72 chromosome 9 open reading frame 72
CANX calnexin
CASP2 caspase 2, apoptosis-related cysteine peptidase
CASP3 caspase 3, apoptosis-related cysteine peptidase
CASR calcium-sensing receptor
CAV1 caveolin 1, caveolae protein, 22kDa
CBS cystathionine-beta-synthase
CCND1 cyclin D1
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDKN2A cyclin-dependent kinase inhibitor 2A
CENPJ centromere protein J
CENPW centromere protein W
CEP164 centrosomal protein 164kDa
CERK ceramide kinase
CFAP221 cilia and flagella associated protein 221
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4
CHD7 chromodomain helicase DNA binding protein 7
CHGA chromogranin A
CLU clusterin
COIL coilin
COMT catechol-O-methyltransferase
CP ceruloplasmin (ferroxidase)
CREB1 cAMP responsive element binding protein 1
CRTC1 CREB regulated transcription coactivator 1
CRTC2 CREB regulated transcription coactivator 2
CRTC3 CREB regulated transcription coactivator 3
CTDNEP1 CTD nuclear envelope phosphatase 1
CTH cystathionine gamma-lyase
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CYFIP1 cytoplasmic FMR1 interacting protein 1
CYFIP2 cytoplasmic FMR1 interacting protein 2
DCTN2 dynactin 2 (p50)
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21
DERL1 derlin 1
DGCR8 DGCR8 microprocessor complex subunit
DHTKD1 dehydrogenase E1 and transketolase domain containing 1
DHX33 DEAH (Asp-Glu-Ala-His) box polypeptide 33
DHX35 DEAH (Asp-Glu-Ala-His) box polypeptide 35
DICER1 dicer 1, ribonuclease type III
DKC1 dyskeratosis congenita 1, dyskerin
DLST dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5
DRD4 dopamine receptor D4
DROSHA drosha, ribonuclease type III
DTNBP1 dystrobrevin binding protein 1
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A
E2F1 E2F transcription factor 1
EBNA1BP2 EBNA1 binding protein 2
EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1
EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2
EIF5A eukaryotic translation initiation factor 5A
EIF6 eukaryotic translation initiation factor 6
EMG1 EMG1 N1-specific pseudouridine methyltransferase
ERN1 endoplasmic reticulum to nucleus signaling 1
ERP29 endoplasmic reticulum protein 29
ESR1 estrogen receptor 1
ESRRA estrogen-related receptor alpha
FASN fatty acid synthase
FBN1 fibrillin 1
FDX1L ferredoxin 1-like
FDXR ferredoxin reductase
FGF3 fibroblast growth factor 3
FLCN folliculin
FOS FBJ murine osteosarcoma viral oncogene homolog
FOSL1 FOS-like antigen 1
FRG1 FSHD region gene 1
FUS FUS RNA binding protein
FXN frataxin
GABARAPL2 GABA(A) receptor-associated protein-like 2
GABRB2 gamma-aminobutyric acid (GABA) A receptor, beta 2
GABRG2 gamma-aminobutyric acid (GABA) A receptor, gamma 2
GEMIN5 gem (nuclear organelle) associated protein 5
GJB2 gap junction protein, beta 2, 26kDa
GJB3 gap junction protein, beta 3, 31kDa
GLRA1 glycine receptor, alpha 1
GNL3 guanine nucleotide binding protein-like 3 (nucleolar)
GP9 glycoprotein IX (platelet)
GPM6B glycoprotein M6B
GPR15 G protein-coupled receptor 15
GRIA1 glutamate receptor, ionotropic, AMPA 1
GSK3B glycogen synthase kinase 3 beta
HDGF hepatoma-derived growth factor
HGS hepatocyte growth factor-regulated tyrosine kinase substrate
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HIST1H4A histone cluster 1, H4a
HK3 hexokinase 3 (white cell)
HMOX1 heme oxygenase 1
HNRNPL heterogeneous nuclear ribonucleoprotein L
HPS1 Hermansky-Pudlak syndrome 1
HPS3 Hermansky-Pudlak syndrome 3
HPS4 Hermansky-Pudlak syndrome 4
HTR2C 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled
IBA57 IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)
IDE insulin-degrading enzyme
ILF3 interleukin enhancer binding factor 3, 90kDa
ISCA1 iron-sulfur cluster assembly 1
ISCA2 iron-sulfur cluster assembly 2
ISG20L2 interferon stimulated exonuclease gene 20kDa-like 2
ITGA2B integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)
KCNE1 potassium channel, voltage gated subfamily E regulatory beta subunit 1
KCNE2 potassium channel, voltage gated subfamily E regulatory beta subunit 2
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KHSRP KH-type splicing regulatory protein
KISS1 KiSS-1 metastasis-suppressor
LAS1L LAS1-like (S. cerevisiae)
LCAT lecithin-cholesterol acyltransferase
LCMT1 leucine carboxyl methyltransferase 1
LETM1 leucine zipper-EF-hand containing transmembrane protein 1
LGALS3 lectin, galactoside-binding, soluble, 3
LIN28A lin-28 homolog A (C. elegans)
LMNB1 lamin B1
LPCAT2 lysophosphatidylcholine acyltransferase 2
LYAR Ly1 antibody reactive
LYRM4 LYR motif containing 4
MALSU1 mitochondrial assembly of ribosomal large subunit 1
MAP2K1 mitogen-activated protein kinase kinase 1
MAP2K2 mitogen-activated protein kinase kinase 2
MAP3K5 mitogen-activated protein kinase kinase kinase 5
MAPK8 mitogen-activated protein kinase 8
MATN4 matrilin 4
MBNL1 muscleblind-like splicing regulator 1
MBTPS1 membrane-bound transcription factor peptidase, site 1
MCOLN1 mucolipin 1
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MET MET proto-oncogene, receptor tyrosine kinase
MICALL1 MICAL-like 1
MINA MYC induced nuclear antigen
MIR122 microRNA 122
MIR125A microRNA 125a
MIR145 microRNA 145
MIR155 microRNA 155
MIR15A microRNA 15a
MIR16-1 microRNA 16-1
MIR18A microRNA 18a
MIR21 microRNA 21
MIR27A microRNA 27a
MIR27B microRNA 27b
MIR519C microRNA 519c
MORN2 MORN repeat containing 2
MPV17L2 MPV17 mitochondrial membrane protein-like 2
MT-TL1 tRNA
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MTTP microsomal triglyceride transfer protein
MTX1 metaxin 1
MTX2 metaxin 2
MXD1 MAX dimerization protein 1
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYL2 myosin, light chain 2, regulatory, cardiac, slow
MYLK myosin light chain kinase
NAPA N-ethylmaleimide-sensitive factor attachment protein, alpha
NARFL nuclear prelamin A recognition factor-like
NCL nucleolin
NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
NDUFA3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa
NDUFA5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5
NEWENTRY Record to support submission of GeneRIFs for a gene not in Gene (human; man).
NFE2 nuclear factor, erythroid 2
NFE2L2 nuclear factor, erythroid 2-like 2
NOA1 nitric oxide associated 1
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae)
NOL11 nucleolar protein 11
NOP16 NOP16 nucleolar protein
NOS1 nitric oxide synthase 1 (neuronal)
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NPSR1 neuropeptide S receptor 1
NR1H3 nuclear receptor subfamily 1, group H, member 3
NRF1 nuclear respiratory factor 1
NSA2 NSA2 ribosome biogenesis homolog (S. cerevisiae)
NVL nuclear VCP-like
OA1 Osteoarthritis QTL 1
PABPN1 poly(A) binding protein, nuclear 1
PACSIN2 protein kinase C and casein kinase substrate in neurons 2
PAPD4 PAP associated domain containing 4
PARK2 parkin RBR E3 ubiquitin protein ligase
PARK7 parkinson protein 7
PARP1 poly (ADP-ribose) polymerase 1
PDCD6IP programmed cell death 6 interacting protein
PDCL3 phosducin-like 3
PELP1 proline, glutamate and leucine rich protein 1
PES1 pescadillo ribosomal biogenesis factor 1
PET100 PET100 homolog (S. cerevisiae)
PEX1 peroxisomal biogenesis factor 1
PEX10 peroxisomal biogenesis factor 10
PEX11B peroxisomal biogenesis factor 11 beta
PEX12 peroxisomal biogenesis factor 12
PEX13 peroxisomal biogenesis factor 13
PEX14 peroxisomal biogenesis factor 14
PEX16 peroxisomal biogenesis factor 16
PEX19 peroxisomal biogenesis factor 19
PEX2 peroxisomal biogenesis factor 2
PEX26 peroxisomal biogenesis factor 26
PEX3 peroxisomal biogenesis factor 3
PEX6 peroxisomal biogenesis factor 6
PHB prohibitin
PHB2 prohibitin 2
PIWIL1 piwi-like RNA-mediated gene silencing 1
PLA2G4A phospholipase A2, group IVA (cytosolic, calcium-dependent)
PLD2 phospholipase D2
PLVAP plasmalemma vesicle associated protein
POLG polymerase (DNA directed), gamma
PPARD peroxisome proliferator-activated receptor delta
PPARG peroxisome proliferator-activated receptor gamma
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta
PPIB peptidylprolyl isomerase B (cyclophilin B)
PPME1 protein phosphatase methylesterase 1
PPP2CA protein phosphatase 2, catalytic subunit, alpha isozyme
PPP2R4 protein phosphatase 2A activator, regulatory subunit 4
PPRC1 peroxisome proliferator-activated receptor gamma, coactivator-related 1
PRKACA protein kinase, cAMP-dependent, catalytic, alpha
PRMT5 protein arginine methyltransferase 5
PRMT7 protein arginine methyltransferase 7
PRND prion protein 2 (dublet)
PRNP prion protein
PTEN phosphatase and tensin homolog
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTK2B protein tyrosine kinase 2 beta
RAB10 RAB10, member RAS oncogene family
RAB11A RAB11A, member RAS oncogene family
RAB1A RAB1A, member RAS oncogene family
RAB27A RAB27A, member RAS oncogene family
RAB32 RAB32, member RAS oncogene family
RAB38 RAB38, member RAS oncogene family
RAB40C RAB40C, member RAS oncogene family
RAB43 RAB43, member RAS oncogene family
RAB5A RAB5A, member RAS oncogene family
RAB7A RAB7A, member RAS oncogene family
RAB9A RAB9A, member RAS oncogene family
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
RB1CC1 RB1-inducible coiled-coil 1
RBM8A RNA binding motif protein 8A
REN renin
RILP Rab interacting lysosomal protein
RNH1 ribonuclease/angiogenin inhibitor 1
ROCK1 Rho-associated, coiled-coil containing protein kinase 1
RPF2 ribosome production factor 2 homolog (S. cerevisiae)
RPL11 ribosomal protein L11
RPL29 ribosomal protein L29
RPL30 ribosomal protein L30
RPL5 ribosomal protein L5
RPS10 ribosomal protein S10
RPS19 ribosomal protein S19
RPS2 ribosomal protein S2
RPS6 ribosomal protein S6
RPS9 ribosomal protein S9
RRBP1 ribosome binding protein 1
RUNX1 runt-related transcription factor 1
SAMM50 SAMM50 sorting and assembly machinery component
SBDS Shwachman-Bodian-Diamond syndrome
SCAMP3 secretory carrier membrane protein 3
SCO2 SCO2 cytochrome c oxidase assembly protein
SDCBP syndecan binding protein (syntenin)
SENP3 SUMO1/sentrin/SMT3 specific peptidase 3
SF3B2 splicing factor 3b, subunit 2, 145kDa
SF3B4 splicing factor 3b, subunit 4, 49kDa
SH3GLB1 SH3-domain GRB2-like endophilin B1
SH3RF1 SH3 domain containing ring finger 1
SHARPIN SHANK-associated RH domain interactor
SHH sonic hedgehog
SIRT1 sirtuin 1
SIRT3 sirtuin 3
SIRT7 sirtuin 7
SLC12A3 solute carrier family 12 (sodium/chloride transporter), member 3
SLC25A39 solute carrier family 25, member 39
SLC25A4 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4
SLC3A1 solute carrier family 3 (amino acid transporter heavy chain), member 1
SLC9A6 solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6
SMN1 survival of motor neuron 1, telomeric
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SNIP1 Smad nuclear interacting protein 1
SNTA1 syntrophin, alpha 1
SNX12 sorting nexin 12
SNX3 sorting nexin 3
SNX6 sorting nexin 6
SPECC1 sperm antigen with calponin homology and coiled-coil domains 1
SPTBN1 spectrin, beta, non-erythrocytic 1
SREBF1 sterol regulatory element binding transcription factor 1
SREBF2 sterol regulatory element binding transcription factor 2
SSB Sjogren syndrome antigen B (autoantigen La)
STAT1 signal transducer and activator of transcription 1, 91kDa
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STIL SCL/TAL1 interrupting locus
STRAP serine/threonine kinase receptor associated protein
SURF1 surfeit 1
SYP synaptophysin
TARBP2 TAR (HIV-1) RNA binding protein 2
TARDBP TAR DNA binding protein
TCOF1 Treacher Collins-Franceschetti syndrome 1
TDP2 tyrosyl-DNA phosphodiesterase 2
TERC telomerase RNA component
TERT telomerase reverse transcriptase
TEX10 testis expressed 10
TFAM transcription factor A, mitochondrial
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
TFB1M transcription factor B1, mitochondrial
TFB2M transcription factor B2, mitochondrial
TFEB transcription factor EB
TGFB1 transforming growth factor, beta 1
THG1L tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
TIPRL TOR signaling pathway regulator
TK2 thymidine kinase 2, mitochondrial
TMEM70 transmembrane protein 70
TP53 tumor protein p53
TUBGCP6 tubulin, gamma complex associated protein 6
UCP1 uncoupling protein 1 (mitochondrial, proton carrier)
UFM1 ubiquitin-fold modifier 1
ULK1 unc-51 like autophagy activating kinase 1
UPF1 UPF1 regulator of nonsense transcripts homolog (yeast)
UQCC1 ubiquinol-cytochrome c reductase complex assembly factor 1
UQCC2 ubiquinol-cytochrome c reductase complex assembly factor 2
VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2)
VCP valosin containing protein
VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
VMP1 vacuole membrane protein 1
VPS33B vacuolar protein sorting 33 homolog B (yeast)
WBSCR22 Williams Beuren syndrome chromosome region 22
WDR18 WD repeat domain 18
XPO5 exportin 5
YME1L1 YME1-like 1 ATPase
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta
ZC3H12A zinc finger CCCH-type containing 12A
ZCCHC11 zinc finger, CCHC domain containing 11
ZCCHC6 zinc finger, CCHC domain containing 6
ZFP36 ZFP36 ring finger protein
ZPBP zona pellucida binding protein
ZPBP2 zona pellucida binding protein 2