biofilm matrix Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A structure lying external to bacterial cells. A biofilm is an aggregate of surface-associated bacteria, and the biofilm matrix is the envelope of polymeric substances that surrounds the bacteria. (Gene Ontology, GO_0097311)
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35 proteins co-occuring with the biofilm matrix cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
GBAP1 glucosidase, beta, acid pseudogene 1 1.45647
DEFB103B defensin, beta 103B 1.34392
LRG1 leucine-rich alpha-2-glycoprotein 1 1.2921
DEFB103A defensin, beta 103A 1.16901
REXO1L1P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene 0.940689
ST5 suppression of tumorigenicity 5 0.849287
DNASE1 deoxyribonuclease I 0.808441
MAN2C1 mannosidase, alpha, class 2C, member 1 0.801104
GALE UDP-galactose-4-epimerase 0.772275
MIER1 mesoderm induction early response 1, transcriptional regulator 0.736014
DCD dermcidin 0.659482
CHD1L chromodomain helicase DNA binding protein 1-like 0.650869
IMPA1 inositol(myo)-1(or 4)-monophosphatase 1 0.632878
GALK1 galactokinase 1 0.620104
CLEC3A C-type lectin domain family 3, member A 0.605284
CLEC2B C-type lectin domain family 2, member B 0.589714
CLEC10A C-type lectin domain family 10, member A 0.583849
PHF12 PHD finger protein 12 0.523067
CRYGD crystallin, gamma D 0.490539
TAPBP TAP binding protein (tapasin) 0.486096
MDC1 mediator of DNA-damage checkpoint 1 0.459203
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.452427
CARS cysteinyl-tRNA synthetase 0.425924
CAMP cathelicidin antimicrobial peptide 0.361659
MGAT4C MGAT4 family, member C 0.314839
LBR lamin B receptor 0.28846
CTSC cathepsin C 0.283663
ARPP21 cAMP-regulated phosphoprotein, 21kDa 0.26166
SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 0.239197
PF4 platelet factor 4 0.233817
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.223497
GBA glucosidase, beta, acid 0.190175
ICT1 immature colon carcinoma transcript 1 0.16935
HPR haptoglobin-related protein 0.158502
MAPK14 mitogen-activated protein kinase 14 0.156688