axenic culture Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description A situation in which only one species is present. Thus an axenic culture is uncontaminated by organisms of other species, an axenic organism does not have commensal organisms in the gut etc. Some organisms have obligate symbionts and cannot be grown axenically. (BRENDA Tissue and Enzyme Source Ontology, BTO_0001091)
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Genes

86 proteins co-occuring with the tissue axenic culture in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
KRT9 keratin 9, type I 2.04765
L3MBTL3 l(3)mbt-like 3 (Drosophila) 1.47428
CHRM2 cholinergic receptor, muscarinic 2 1.27695
ZNF675 zinc finger protein 675 1.0775
USP9X ubiquitin specific peptidase 9, X-linked 0.997166
STX5 syntaxin 5 0.962039
HAUS3 HAUS augmin-like complex, subunit 3 0.91308
LPP LIM domain containing preferred translocation partner in lipoma 0.884591
ONECUT3 one cut homeobox 3 0.843286
JDP2 Jun dimerization protein 2 0.842447
SUPT20H suppressor of Ty 20 homolog (S. cerevisiae) 0.83993
CFL1 cofilin 1 (non-muscle) 0.835318
RERE arginine-glutamic acid dipeptide (RE) repeats 0.818994
SPAG1 sperm associated antigen 1 0.816068
TCN2 transcobalamin II 0.809386
CHRM3 cholinergic receptor, muscarinic 3 0.806465
ZNF347 zinc finger protein 347 0.796874
PPP1R17 protein phosphatase 1, regulatory subunit 17 0.796874
CFHR1 complement factor H-related 1 0.769855
CKAP5 cytoskeleton associated protein 5 0.767368
CHN2 chimerin 2 0.764054
EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 0.760742
IPP intracisternal A particle-promoted polypeptide 0.759086
RNASET2 ribonuclease T2 0.757845
LAP3 leucine aminopeptidase 3 0.750405
MAN2B1 mannosidase, alpha, class 2B, member 1 0.749579
TPI1 triosephosphate isomerase 1 0.713369
STIP1 stress-induced phosphoprotein 1 0.707221
HK1 hexokinase 1 0.704355
GPLD1 glycosylphosphatidylinositol specific phospholipase D1 0.695763
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.6721
NCF4 neutrophil cytosolic factor 4, 40kDa 0.661523
PFN2 profilin 2 0.659897
LST1 leukocyte specific transcript 1 0.659897
SQLE squalene epoxidase 0.65056
ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 0.637999
OCM2 oncomodulin 2 0.600881
OCM oncomodulin 0.597263
RHOA ras homolog family member A 0.595255
ACPP acid phosphatase, prostate 0.591641
SELENBP1 selenium binding protein 1 0.590839
GADD45G growth arrest and DNA-damage-inducible, gamma 0.57082
PDS5B PDS5 cohesin associated factor B 0.553683
IDS iduronate 2-sulfatase 0.538209
APOE apolipoprotein E 0.537416
HEXDC hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing 0.52635
MAT1A methionine adenosyltransferase I, alpha 0.52635
TOX thymocyte selection-associated high mobility group box 0.518072
WNT10A wingless-type MMTV integration site family, member 10A 0.517284
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.517284
H3F3B H3 histone, family 3B (H3.3B) 0.512564
H3F3A H3 histone, family 3A 0.512564
CSN1S1 casein alpha s1 0.506279
FDFT1 farnesyl-diphosphate farnesyltransferase 1 0.481259
SUMF2 sulfatase modifying factor 2 0.461852
AGXT alanine-glyoxylate aminotransferase 0.454898
CR2 complement component (3d/Epstein Barr virus) receptor 2 0.441042
MBL2 mannose-binding lectin (protein C) 2, soluble 0.422673
HDAC4 histone deacetylase 4 0.417337
SRPX2 sushi-repeat containing protein, X-linked 2 0.416957
CAT catalase 0.415053
PPP4C protein phosphatase 4, catalytic subunit 0.413151
PPP1CA protein phosphatase 1, catalytic subunit, alpha isozyme 0.40328
FDPS farnesyl diphosphate synthase 0.402144
PGC progastricsin (pepsinogen C) 0.396844
ARHGEF1 Rho guanine nucleotide exchange factor (GEF) 1 0.386273
TEF thyrotrophic embryonic factor 0.363393
LAMP2 lysosomal-associated membrane protein 2 0.355198
GLUL glutamate-ammonia ligase 0.34926
SOD2 superoxide dismutase 2, mitochondrial 0.3356
G6PD glucose-6-phosphate dehydrogenase 0.326067
PFN4 profilin family, member 4 0.320956
CTSB cathepsin B 0.310783
RALA v-ral simian leukemia viral oncogene homolog A (ras related) 0.302838
ALB albumin 0.29673
UGP2 UDP-glucose pyrophosphorylase 2 0.291722
PAH phenylalanine hydroxylase 0.279307
LTF lactotransferrin 0.275094
PFN1 profilin 1 0.268828
SI sucrase-isomaltase (alpha-glucosidase) 0.265038
MGAM maltase-glucoamylase 0.262304
GSR glutathione reductase 0.248361
RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 0.238406
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 0.22246
ACKR1 atypical chemokine receptor 1 (Duffy blood group) 0.214202
GPI glucose-6-phosphate isomerase 0.213471