autophagic vacuole membrane Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The lipid bilayer surrounding an autophagic vacuole, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered. (Gene Ontology, GO_0000421)
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Genes

83 proteins co-occuring with the autophagic vacuole membrane cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
ATG3 autophagy related 3 1.62945
ATG5 autophagy related 5 1.48192
ATG4B autophagy related 4B, cysteine peptidase 1.44347
VMP1 vacuole membrane protein 1 1.42261
WIPI1 WD repeat domain, phosphoinositide interacting 1 1.40466
ATG16L1 autophagy related 16-like 1 (S. cerevisiae) 1.40186
BECN1 beclin 1, autophagy related 1.35978
GABARAP GABA(A) receptor-associated protein 1.26974
TBC1D14 TBC1 domain family, member 14 1.26445
ATG12 autophagy related 12 1.22776
MAP1LC3B microtubule-associated protein 1 light chain 3 beta 1.19108
SQSTM1 sequestosome 1 1.14699
PIK3C3 phosphatidylinositol 3-kinase, catalytic subunit type 3 1.14239
MAP4 microtubule-associated protein 4 1.11021
ZFYVE1 zinc finger, FYVE domain containing 1 1.09543
TP53INP2 tumor protein p53 inducible nuclear protein 2 1.07866
MAP1LC3C microtubule-associated protein 1 light chain 3 gamma 1.05387
ATG4A autophagy related 4A, cysteine peptidase 1.04431
ULK1 unc-51 like autophagy activating kinase 1 1.0403
FYCO1 FYVE and coiled-coil domain containing 1 0.993672
ATG7 autophagy related 7 0.989759
WIPI2 WD repeat domain, phosphoinositide interacting 2 0.984393
STX17 syntaxin 17 0.983419
MAP2 microtubule-associated protein 2 0.977104
MAPT microtubule-associated protein tau 0.961667
ATG14 autophagy related 14 0.902745
MTOR mechanistic target of rapamycin (serine/threonine kinase) 0.865367
NBR1 neighbor of BRCA1 gene 1 0.835515
MAP1LC3A microtubule-associated protein 1 light chain 3 alpha 0.831384
RB1CC1 RB1-inducible coiled-coil 1 0.827712
GABARAPL2 GABA(A) receptor-associated protein-like 2 0.817158
TBC1D5 TBC1 domain family, member 5 0.715458
CDC16 cell division cycle 16 0.708808
RPL28 ribosomal protein L28 0.692516
MTMR3 myotubularin related protein 3 0.682899
ATG4D autophagy related 4D, cysteine peptidase 0.64958
DAPK1 death-associated protein kinase 1 0.600223
BAG3 BCL2-associated athanogene 3 0.548947
TP53INP1 tumor protein p53 inducible nuclear protein 1 0.521432
BNIP1 BCL2/adenovirus E1B 19kDa interacting protein 1 0.517348
CALCOCO2 calcium binding and coiled-coil domain 2 0.494585
HSPB8 heat shock 22kDa protein 8 0.490135
SH3GLB1 SH3-domain GRB2-like endophilin B1 0.47844
YKT6 YKT6 v-SNARE homolog (S. cerevisiae) 0.477636
ATG10 autophagy related 10 0.469604
SYNPO2 synaptopodin 2 0.452427
VAMP8 vesicle-associated membrane protein 8 0.438146
HSPA8 heat shock 70kDa protein 8 0.433012
MTM1 myotubularin 1 0.431829
APOBEC3A apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A 0.412992
ATG4C autophagy related 4C, cysteine peptidase 0.392388
ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 0.390841
RAB32 RAB32, member RAS oncogene family 0.358228
GABARAPL1 GABA(A) receptor-associated protein like 1 0.347967
VAMP3 vesicle-associated membrane protein 3 0.342664
PRKD1 protein kinase D1 0.341151
EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 0.339261
DHRS9 dehydrogenase/reductase (SDR family) member 9 0.336241
OFD1 oral-facial-digital syndrome 1 0.330213
PIK3R4 phosphoinositide-3-kinase, regulatory subunit 4 0.319702
BAG1 BCL2-associated athanogene 0.304771
NUPR1 nuclear protein, transcriptional regulator, 1 0.292157
RALB v-ral simian leukemia viral oncogene homolog B 0.288091
VPS29 vacuolar protein sorting 29 homolog (S. cerevisiae) 0.272633
MAP1A microtubule-associated protein 1A 0.263485
UVRAG UV radiation resistance associated 0.259837
CAMKK2 calcium/calmodulin-dependent protein kinase kinase 2, beta 0.253291
SNCA synuclein, alpha (non A4 component of amyloid precursor) 0.244601
SNAP25 synaptosomal-associated protein, 25kDa 0.230601
SNAPIN SNAP-associated protein 0.229532
DAP death-associated protein 0.224204
FADD Fas (TNFRSF6)-associated via death domain 0.219265
SH2D3C SH2 domain containing 3C 0.21716
ASS1 argininosuccinate synthase 1 0.211587
TNFSF10 tumor necrosis factor (ligand) superfamily, member 10 0.21124
OPTN optineurin 0.207108
TFEB transcription factor EB 0.205059
LAMP1 lysosomal-associated membrane protein 1 0.200328
BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 0.185777
PRDX2 peroxiredoxin 2 0.165463
LAMP2 lysosomal-associated membrane protein 2 0.165231
PLD1 phospholipase D1, phosphatidylcholine-specific 0.161275
SH2D3A SH2 domain containing 3A 0.161068