atrophy Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

256 genes co-occuring with the biological term atrophy in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4
ABRA actin binding Rho activating protein
ACE angiotensin I converting enzyme
ACSL5 acyl-CoA synthetase long-chain family member 5
AICDA activation-induced cytidine deaminase
AKT1 v-akt murine thymoma viral oncogene homolog 1
AMBP alpha-1-microglobulin/bikunin precursor
ANKK1 ankyrin repeat and kinase domain containing 1
ANO10 anoctamin 10
APOE apolipoprotein E
APP amyloid beta (A4) precursor protein
APTX aprataxin
AQP4 aquaporin 4
AR androgen receptor
ARMS2 age-related maculopathy susceptibility 2
ASAH1 N-acylsphingosine amidohydrolase (acid ceramidase) 1
ATM ATM serine/threonine kinase
ATN1 atrophin 1
ATXN1 ataxin 1
ATXN2 ataxin 2
ATXN3 ataxin 3
ATXN8OS ATXN8 opposite strand (non-protein coding)
AZF1 azoospermia factor 1
AZGP1 alpha-2-glycoprotein 1, zinc-binding
BCL2 B-cell CLL/lymphoma 2
BCL2L1 BCL2-like 1
BDNF brain-derived neurotrophic factor
BICD2 bicaudal D homolog 2 (Drosophila)
C12ORF65 chromosome 12 open reading frame 65
C1QTNF5 C1q and tumor necrosis factor related protein 5
C3 complement component 3
C8ORF37 chromosome 8 open reading frame 37
C9ORF72 chromosome 9 open reading frame 72
CACNA1A calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit
CALB1 calbindin 1, 28kDa
CAPN3 calpain 3, (p94)
CAST calpastatin
CBLB Cbl proto-oncogene B, E3 ubiquitin protein ligase
CCDC88C coiled-coil domain containing 88C
CCL2 chemokine (C-C motif) ligand 2
CDX2 caudal type homeobox 2
CFH complement factor H
CFHR1 complement factor H-related 1
CFHR3 complement factor H-related 3
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHIA chitinase, acidic
CHM choroideremia (Rab escort protein 1)
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin
CLU clusterin
CNGB3 cyclic nucleotide gated channel beta 3
COL2A1 collagen, type II, alpha 1
COPA coatomer protein complex, subunit alpha
COQ2 coenzyme Q2 4-hydroxybenzoate polyprenyltransferase
CRB1 crumbs family member 1, photoreceptor morphogenesis associated
CRP C-reactive protein, pentraxin-related
CRYAB crystallin, alpha B
CX3CR1 chemokine (C-X3-C motif) receptor 1
CXCL12 chemokine (C-X-C motif) ligand 12
CXCL8 chemokine (C-X-C motif) ligand 8
DAPK1 death-associated protein kinase 1
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase)
DDIT4 DNA-damage-inducible transcript 4
DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
DICER1 dicer 1, ribonuclease type III
DMPK dystrophia myotonica-protein kinase
DNMT1 DNA (cytosine-5-)-methyltransferase 1
DPP6 dipeptidyl-peptidase 6
DRD2 dopamine receptor D2
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1
DYSF dysferlin
FAS Fas cell surface death receptor
FASLG Fas ligand (TNF superfamily, member 6)
FBXO32 F-box protein 32
FBXO7 F-box protein 7
FERMT1 fermitin family member 1
FGFR1OP2 FGFR1 oncogene partner 2
FHL1 four and a half LIM domains 1
FOXO1 forkhead box O1
FOXO3 forkhead box O3
FUS FUS RNA binding protein
GARS glycyl-tRNA synthetase
GAST gastrin
GBA glucosidase, beta, acid
GBE1 glucan (1,4-alpha-), branching enzyme 1
GDF15 growth differentiation factor 15
GDNF glial cell derived neurotrophic factor
GEMIN2 gem (nuclear organelle) associated protein 2
GEMIN4 gem (nuclear organelle) associated protein 4
GFAP glial fibrillary acidic protein
GH1 growth hormone 1
GHRL ghrelin/obestatin prepropeptide
GLRX5 glutaredoxin 5
GNA12 guanine nucleotide binding protein (G protein) alpha 12
GOLM1 golgi membrane protein 1
GRN granulin
GSK3B glycogen synthase kinase 3 beta
GSTM3 glutathione S-transferase mu 3 (brain)
GSTP1 glutathione S-transferase pi 1
GTF2H2 general transcription factor IIH, polypeptide 2, 44kDa
GZMB granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)
HAVCR1 hepatitis A virus cellular receptor 1
HDAC1 histone deacetylase 1
HDAC6 histone deacetylase 6
HIGD1A HIG1 hypoxia inducible domain family, member 1A
HIST4H4 histone cluster 4, H4
HLA-B major histocompatibility complex, class I, B
HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
HLA-DRB1 major histocompatibility complex, class II, DR beta 1
HNRNPM heterogeneous nuclear ribonucleoprotein M
HPGDS hematopoietic prostaglandin D synthase
HRH2 histamine receptor H2
HSPG2 heparan sulfate proteoglycan 2
HTRA1 HtrA serine peptidase 1
HTT huntingtin
ICAM1 intercellular adhesion molecule 1
IFIH1 interferon induced with helicase C domain 1
IFNG interferon, gamma
IGF1 insulin-like growth factor 1 (somatomedin C)
IGHMBP2 immunoglobulin mu binding protein 2
IL17A interleukin 17A
IL1B interleukin 1, beta
IL2 interleukin 2
IL6 interleukin 6
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1
KDSR 3-ketodihydrosphingosine reductase
KLF7 Kruppel-like factor 7 (ubiquitous)
LETM1 leucine zipper-EF-hand containing transmembrane protein 1
LMNA lamin A/C
LOC647859 occludin pseudogene
LRRK2 leucine-rich repeat kinase 2
LTA lymphotoxin alpha
LTB lymphotoxin beta (TNF superfamily, member 3)
MAPT microtubule-associated protein tau
MBL2 mannose-binding lectin (protein C) 2, soluble
MED17 mediator complex subunit 17
MERTK MER proto-oncogene, tyrosine kinase
MFN2 mitofusin 2
MGEA5 meningioma expressed antigen 5 (hyaluronidase)
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor)
MIR146A microRNA 146a
MIR27A microRNA 27a
MIR9-1 microRNA 9-1
MME membrane metallo-endopeptidase
MMP2 matrix metallopeptidase 2
MMP7 matrix metallopeptidase 7
MPO myeloperoxidase
MPZ myelin protein zero
MSTN myostatin
MT-ND5 NADH dehydrogenase, subunit 5 (complex I)
MT3 metallothionein 3
MTHFR methylenetetrahydrofolate reductase (NAD(P)H)
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MUSK muscle, skeletal, receptor tyrosine kinase
MYD88 myeloid differentiation primary response 88
MYL2 myosin, light chain 2, regulatory, cardiac, slow
MYOG myogenin (myogenic factor 4)
MYOT myotilin
NAIP NLR family, apoptosis inhibitory protein
NBAS neuroblastoma amplified sequence
NEFL neurofilament, light polypeptide
NEWENTRY Record to support submission of GeneRIFs for a gene not in Gene (human; man).
NGF nerve growth factor (beta polypeptide)
NLRP3 NLR family, pyrin domain containing 3
NMNAT1 nicotinamide nucleotide adenylyltransferase 1
NOD1 nucleotide-binding oligomerization domain containing 1
NOLC1 nucleolar and coiled-body phosphoprotein 1
NOS1 nitric oxide synthase 1 (neuronal)
NR2F1 nuclear receptor subfamily 2, group F, member 1
NTF4 neurotrophin 4
NTN1 netrin 1
OAT ornithine aminotransferase
OCLN occludin
OPA1 optic atrophy 1 (autosomal dominant)
OPA3 optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
OPA5 optic atrophy 5 (autosomal dominant)
ORAI1 ORAI calcium release-activated calcium modulator 1
PARK2 parkin RBR E3 ubiquitin protein ligase
PDHA1 pyruvate dehydrogenase (lipoamide) alpha 1
PDYN prodynorphin
PEX10 peroxisomal biogenesis factor 10
PGA3 pepsinogen 3, group I (pepsinogen A)
PGC progastricsin (pepsinogen C)
PINK1 PTEN induced putative kinase 1
PITX3 paired-like homeodomain 3
PKD1L2 polycystic kidney disease 1-like 2 (gene/pseudogene)
PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent)
PLS3 plastin 3
POLG polymerase (DNA directed), gamma
PPARG peroxisome proliferator-activated receptor gamma
PPP1R1B protein phosphatase 1, regulatory (inhibitor) subunit 1B
PPP2R2B protein phosphatase 2, regulatory subunit B, beta
PRKCH protein kinase C, eta
PRL prolactin
PRSS1 protease, serine, 1 (trypsin 1)
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTPN11 protein tyrosine phosphatase, non-receptor type 11
RB1CC1 RB1-inducible coiled-coil 1
RBP1 retinol binding protein 1, cellular
RDH12 retinol dehydrogenase 12 (all-trans/9-cis/11-cis)
RRAD Ras-related associated with diabetes
RS1 retinoschisin 1
RUNX3 runt-related transcription factor 3
RYR1 ryanodine receptor 1 (skeletal)
S100B S100 calcium binding protein B
SCO2 SCO2 cytochrome c oxidase assembly protein
SDC1 syndecan 1
SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
SERF1A small EDRK-rich factor 1A (telomeric)
SETX senataxin
SHC2 SHC (Src homology 2 domain containing) transforming protein 2
SHH sonic hedgehog
SIRT2 sirtuin 2
SLC9A1 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1
SMN1 survival of motor neuron 1, telomeric
SMN2 survival of motor neuron 2, centromeric
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SOD1 superoxide dismutase 1, soluble
SORL1 sortilin-related receptor, L(DLR class) A repeats containing
SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive)
SPTAN1 spectrin, alpha, non-erythrocytic 1
SPTBN2 spectrin, beta, non-erythrocytic 2
SQSTM1 sequestosome 1
SREBF1 sterol regulatory element binding transcription factor 1
STAT5A signal transducer and activator of transcription 5A
STXBP5L syntaxin binding protein 5-like
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein
SYT14 synaptotagmin XIV
TARDBP TAR DNA binding protein
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor)
TFEB transcription factor EB
TGFB1 transforming growth factor, beta 1
TGFBR2 transforming growth factor, beta receptor II (70/80kDa)
TGM2 transglutaminase 2
TK2 thymidine kinase 2, mitochondrial
TLR2 toll-like receptor 2
TLR3 toll-like receptor 3
TLR4 toll-like receptor 4
TMEM126A transmembrane protein 126A
TNF tumor necrosis factor
TPPP tubulin polymerization promoting protein
TRA2B transformer 2 beta homolog (Drosophila)
TRIM63 tripartite motif containing 63, E3 ubiquitin protein ligase
TRPV4 transient receptor potential cation channel, subfamily V, member 4
TSC1 tuberous sclerosis 1
TUBB4A tubulin, beta 4A class IVa
UBA1 ubiquitin-like modifier activating enzyme 1
UBB ubiquitin B
VIM vimentin
VRK1 vaccinia related kinase 1
WDR81 WD repeat domain 81
WFS1 Wolfram syndrome 1 (wolframin)
YAP1 Yes-associated protein 1
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta
YY1 YY1 transcription factor
ZNF592 zinc finger protein 592