Subparafascicular nucleus Gene Set

Dataset Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles
Category transcriptomics
Type tissue
Description The term subparafascicular nucleus refers to a cell group located ventral to the parafascicular nucleus in the thalamus. Identified by internal structure, it is present in the human ( Mai-1997 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-1998 ), and the mouse ( Hof-2000 ). (Uber Anatomy Ontology, UBERON_0016641)
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Genes

336 genes with high or low expression in Subparafascicular nucleus relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
KIAA1804 mixed lineage kinase 4 2.54289
IL9R interleukin 9 receptor 2.48129
AMN amnion associated transmembrane protein 2.41818
GK glycerol kinase 2.40503
MEX3C mex-3 RNA binding family member C 2.36403
RPGR retinitis pigmentosa GTPase regulator 2.33246
SYCP1 synaptonemal complex protein 1 2.32868
RGR retinal G protein coupled receptor 2.3063
MEX3D mex-3 RNA binding family member D 2.27899
ARHGAP29 Rho GTPase activating protein 29 2.22575
SLC22A16 solute carrier family 22 (organic cation/carnitine transporter), member 16 2.1755
EHF ets homologous factor 2.14659
IL5 interleukin 5 2.12818
PMS1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 2.01572
NCAPG non-SMC condensin I complex, subunit G 1.94781
C9ORF152 chromosome 9 open reading frame 152 1.88159
GC group-specific component (vitamin D binding protein) 1.84622
TMEM132C transmembrane protein 132C 1.84202
IL12A interleukin 12A 1.80476
INTS4 integrator complex subunit 4 1.78056
GFRA4 GDNF family receptor alpha 4 1.77534
CES5A carboxylesterase 5A 1.73162
LCN8 lipocalin 8 1.72848
C4ORF51 chromosome 4 open reading frame 51 1.66558
TSGA13 testis specific, 13 1.65376
VWDE von Willebrand factor D and EGF domains 1.64735
SLCO1B3 solute carrier organic anion transporter family, member 1B3 1.63933
FRMPD2 FERM and PDZ domain containing 2 1.63503
THOC1 THO complex 1 1.6106
BLM Bloom syndrome, RecQ helicase-like 1.59496
MEPE matrix extracellular phosphoglycoprotein 1.59167
SURF6 surfeit 6 1.58134
LCA5L Leber congenital amaurosis 5-like 1.57484
KRT31 keratin 31, type I 1.57318
OR52I2 olfactory receptor, family 52, subfamily I, member 2 1.56886
OAZ3 ornithine decarboxylase antizyme 3 1.56049
GHDC GH3 domain containing 1.54335
PLA2G1B phospholipase A2, group IB (pancreas) 1.54278
TRPA1 transient receptor potential cation channel, subfamily A, member 1 1.53333
ITGAE integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) 1.52638
DEPDC1B DEP domain containing 1B 1.52127
MYNN myoneurin 1.5068
ADGRF5 adhesion G protein-coupled receptor F5 1.50565
IQCK IQ motif containing K 1.49829
TH tyrosine hydroxylase 1.48975
EFTUD1 elongation factor Tu GTP binding domain containing 1 1.48889
VAC14 Vac14 homolog (S. cerevisiae) 1.48806
SLC22A2 solute carrier family 22 (organic cation transporter), member 2 1.48756
TIPRL TOR signaling pathway regulator 1.48647
TMEM170A transmembrane protein 170A 1.48068
CTRC chymotrypsin C (caldecrin) 1.47947
SHD Src homology 2 domain containing transforming protein D 1.47146
RECQL4 RecQ protein-like 4 1.46915
PRMT7 protein arginine methyltransferase 7 1.46852
CBLN2 cerebellin 2 precursor 1.44966
MLYCD malonyl-CoA decarboxylase 1.44842
RIPPLY2 ripply transcriptional repressor 2 1.44061
ZYG11A zyg-11 family member A, cell cycle regulator 1.41586
TRMT10B tRNA methyltransferase 10 homolog B (S. cerevisiae) 1.4077
GTF2H4 general transcription factor IIH, polypeptide 4, 52kDa 1.4057
BPIFB3 BPI fold containing family B, member 3 1.39727
DNAJC13 DnaJ (Hsp40) homolog, subfamily C, member 13 1.39397
C21ORF91 chromosome 21 open reading frame 91 1.38036
CBLN4 cerebellin 4 precursor 1.37197
RNASE12 ribonuclease, RNase A family, 12 (non-active) 1.35917
DUSP12 dual specificity phosphatase 12 1.35755
PRDM6 PR domain containing 6 1.34522
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 1.33526
FPR2 formyl peptide receptor 2 1.32655
YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 1.30471
PDCD1 programmed cell death 1 1.30169
C2ORF61 chromosome 2 open reading frame 61 1.30007
GUCY2C guanylate cyclase 2C 1.29711
OR51B6 olfactory receptor, family 51, subfamily B, member 6 1.2953
FGF16 fibroblast growth factor 16 1.29196
KRT16 keratin 16, type I 1.29096
STX2 syntaxin 2 1.2871
GTSF1L gametocyte specific factor 1-like 1.28232
POU4F3 POU class 4 homeobox 3 1.27577
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 1.2692
LSM11 LSM11, U7 small nuclear RNA associated 1.26837
LCP2 lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) 1.25887
PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 1.25728
LIN28A lin-28 homolog A (C. elegans) 1.24866
KIZ kizuna centrosomal protein 1.24313
RNF213 ring finger protein 213 1.23777
NUP210L nucleoporin 210kDa-like 1.23616
VGLL1 vestigial-like family member 1 1.22104
YDJC YdjC homolog (bacterial) 1.22045
TUBB2A tubulin, beta 2A class IIa 1.21919
TNNT1 troponin T type 1 (skeletal, slow) 1.21559
ASPRV1 aspartic peptidase, retroviral-like 1 1.21428
GGPS1 geranylgeranyl diphosphate synthase 1 1.20891
GATA3 GATA binding protein 3 1.1919
BTBD16 BTB (POZ) domain containing 16 1.19011
SLC25A38 solute carrier family 25, member 38 1.1838
RHCG Rh family, C glycoprotein 1.18261
TNFAIP8L1 tumor necrosis factor, alpha-induced protein 8-like 1 1.18259
NCK1 NCK adaptor protein 1 1.17972
G3BP2 GTPase activating protein (SH3 domain) binding protein 2 1.17671
FAM76B family with sequence similarity 76, member B 1.1756
CLPTM1L CLPTM1-like 1.16103
MRGPRF MAS-related GPR, member F 1.15966
ZNF287 zinc finger protein 287 1.15635
CAMSAP1 calmodulin regulated spectrin-associated protein 1 1.1504
TUBA1B tubulin, alpha 1b 1.15018
TBC1D22A TBC1 domain family, member 22A 1.14561
PLXNB3 plexin B3 1.14554
GALK2 galactokinase 2 1.14288
LRRC71 leucine rich repeat containing 71 1.14188
TGM5 transglutaminase 5 1.1403
ZNF665 zinc finger protein 665 1.13493
ZNF416 zinc finger protein 416 1.12554
NELL1 NEL-like 1 (chicken) 1.12229
ILDR1 immunoglobulin-like domain containing receptor 1 1.12192
TFCP2L1 transcription factor CP2-like 1 1.12126
TMEM82 transmembrane protein 82 1.11649
CTPS1 CTP synthase 1 1.11528
XYLT2 xylosyltransferase II 1.11416
PLB1 phospholipase B1 1.1105
BEND7 BEN domain containing 7 1.10901
SYT9 synaptotagmin IX 1.10416
SHISA2 shisa family member 2 1.10054
RAB38 RAB38, member RAS oncogene family 1.09375
STAG3 stromal antigen 3 1.09024
MURC muscle-related coiled-coil protein 1.08966
ABHD12B abhydrolase domain containing 12B 1.08936
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 1.08915
ZSCAN21 zinc finger and SCAN domain containing 21 1.08219
PLEC plectin 1.08215
CDK1 cyclin-dependent kinase 1 1.08086
CDKN2A cyclin-dependent kinase inhibitor 2A 1.07974
VWCE von Willebrand factor C and EGF domains 1.07828
P2RX7 purinergic receptor P2X, ligand gated ion channel, 7 1.07679
PEX2 peroxisomal biogenesis factor 2 1.07211
SPNS3 spinster homolog 3 (Drosophila) 1.0714
LHFPL2 lipoma HMGIC fusion partner-like 2 1.06718
NUDT13 nudix (nucleoside diphosphate linked moiety X)-type motif 13 1.06335
TXK TXK tyrosine kinase 1.06167
CCDC64B coiled-coil domain containing 64B 1.05851
VANGL1 VANGL planar cell polarity protein 1 1.05829
ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 1.05398
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 1.05319
KIRREL kin of IRRE like (Drosophila) 1.05212
GABRA4 gamma-aminobutyric acid (GABA) A receptor, alpha 4 1.04676
GDAP2 ganglioside induced differentiation associated protein 2 1.04375
APBB1IP amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein 1.0374
RPP25 ribonuclease P/MRP 25kDa subunit 1.03432
SLC10A2 solute carrier family 10 (sodium/bile acid cotransporter), member 2 1.03134
DYTN dystrotelin 1.02655
TDRD6 tudor domain containing 6 1.01787
YBEY ybeY metallopeptidase (putative) 1.01244
PPP3R2 protein phosphatase 3, regulatory subunit B, beta 1.01157
IL1B interleukin 1, beta 1.00855
CPXCR1 CPX chromosome region, candidate 1 1.00826
TFF1 trefoil factor 1 1.00412
TSPO2 translocator protein 2 1.0041
GPR12 G protein-coupled receptor 12 1.00285
SLC28A1 solute carrier family 28 (concentrative nucleoside transporter), member 1 1.00126
OR4K2 olfactory receptor, family 4, subfamily K, member 2 1.00116
TMC5 transmembrane channel-like 5 1.00016

low expression

Symbol Name Standardized Value
GLOD5 glyoxalase domain containing 5 -3.5689
TEPP testis, prostate and placenta expressed -2.99359
TNIP3 TNFAIP3 interacting protein 3 -2.50365
SMOC2 SPARC related modular calcium binding 2 -2.23267
C1ORF115 chromosome 1 open reading frame 115 -2.18919
ALPPL2 alkaline phosphatase, placental-like 2 -2.18571
CALR3 calreticulin 3 -2.18429
ZNF711 zinc finger protein 711 -2.07317
C2ORF81 chromosome 2 open reading frame 81 -1.99549
PRSS22 protease, serine, 22 -1.97619
KRT1 keratin 1, type II -1.96017
ADRA2C adrenoceptor alpha 2C -1.91536
BOLA1 bolA family member 1 -1.91167
MRPL24 mitochondrial ribosomal protein L24 -1.84643
SPEF2 sperm flagellar 2 -1.83877
LIPH lipase, member H -1.82563
OR56A4 olfactory receptor, family 56, subfamily A, member 4 -1.80716
HYLS1 hydrolethalus syndrome 1 -1.80285
HHAT hedgehog acyltransferase -1.79699
C1ORF228 chromosome 1 open reading frame 228 -1.79613
MIOX myo-inositol oxygenase -1.79092
SLC44A5 solute carrier family 44, member 5 -1.77333
OR1D2 olfactory receptor, family 1, subfamily D, member 2 -1.75171
CCDC73 coiled-coil domain containing 73 -1.74446
RGSL1 regulator of G-protein signaling like 1 -1.73248
BTG3 BTG family, member 3 -1.71692
DPP3 dipeptidyl-peptidase 3 -1.68502
EPO erythropoietin -1.67235
C1QTNF3 C1q and tumor necrosis factor related protein 3 -1.66756
CFAP58 cilia and flagella associated protein 58 -1.65533
C2ORF80 chromosome 2 open reading frame 80 -1.64875
C9ORF9 chromosome 9 open reading frame 9 -1.62329
C12ORF71 chromosome 12 open reading frame 71 -1.60854
CDKL4 cyclin-dependent kinase-like 4 -1.60404
LRIT1 leucine-rich repeat, immunoglobulin-like and transmembrane domains 1 -1.60389
LGALS3 lectin, galactoside-binding, soluble, 3 -1.60244
GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 -1.59054
NEK6 NIMA-related kinase 6 -1.58969
NEK8 NIMA-related kinase 8 -1.581
CEL carboxyl ester lipase -1.55003
CCDC178 coiled-coil domain containing 178 -1.53855
GRPEL2 GrpE-like 2, mitochondrial (E. coli) -1.53554
TBC1D8B TBC1 domain family, member 8B (with GRAM domain) -1.52883
FSCN3 fascin actin-bundling protein 3, testicular -1.52724
HEBP2 heme binding protein 2 -1.52532
CFI complement factor I -1.51644
SALL3 spalt-like transcription factor 3 -1.49128
HOXD13 homeobox D13 -1.48386
ATF1 activating transcription factor 1 -1.48123
LEP leptin -1.45876
HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 -1.45196
ASTE1 asteroid homolog 1 (Drosophila) -1.42238
AOX1 aldehyde oxidase 1 -1.41994
GP9 glycoprotein IX (platelet) -1.41695
CD84 CD84 molecule -1.40759
NMRK2 nicotinamide riboside kinase 2 -1.40419
ZNF408 zinc finger protein 408 -1.39787
MEI1 meiosis inhibitor 1 -1.39446
RC3H1 ring finger and CCCH-type domains 1 -1.37592
POU2F3 POU class 2 homeobox 3 -1.37387
OR1S1 olfactory receptor, family 1, subfamily S, member 1 (gene/pseudogene) -1.37133
FSIP1 fibrous sheath interacting protein 1 -1.36933
BMP3 bone morphogenetic protein 3 -1.36844
COMMD2 COMM domain containing 2 -1.36439
OR13G1 olfactory receptor, family 13, subfamily G, member 1 -1.36166
MOCOS molybdenum cofactor sulfurase -1.36122
PTH parathyroid hormone -1.34808
C20ORF173 chromosome 20 open reading frame 173 -1.34755
BLZF1 basic leucine zipper nuclear factor 1 -1.33853
CIB1 calcium and integrin binding 1 (calmyrin) -1.32318
BAZ1A bromodomain adjacent to zinc finger domain, 1A -1.32053
ATL2 atlastin GTPase 2 -1.31942
KIAA0101 KIAA0101 -1.31871
MFSD9 major facilitator superfamily domain containing 9 -1.3183
MAGEB5 melanoma antigen family B5 -1.31568
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) -1.30797
IGSF6 immunoglobulin superfamily, member 6 -1.30447
GPR156 G protein-coupled receptor 156 -1.30231
LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) -1.29892
BPIFA3 BPI fold containing family A, member 3 -1.29574
LCMT2 leucine carboxyl methyltransferase 2 -1.29393
SLC30A10 solute carrier family 30, member 10 -1.29273
TIGD4 tigger transposable element derived 4 -1.29197
B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 -1.28516
GEMIN5 gem (nuclear organelle) associated protein 5 -1.2808
GATA6 GATA binding protein 6 -1.27965
NAGK N-acetylglucosamine kinase -1.27269
RABL3 RAB, member of RAS oncogene family-like 3 -1.26909
SIM1 single-minded family bHLH transcription factor 1 -1.25831
C4ORF17 chromosome 4 open reading frame 17 -1.25585
CFAP57 cilia and flagella associated protein 57 -1.2497
IL2RA interleukin 2 receptor, alpha -1.24401
PRSS38 protease, serine, 38 -1.23527
CCDC80 coiled-coil domain containing 80 -1.2335
KRT71 keratin 71, type II -1.22898
MAPKAPK3 mitogen-activated protein kinase-activated protein kinase 3 -1.22873
PAK6 p21 protein (Cdc42/Rac)-activated kinase 6 -1.22871
FOXF1 forkhead box F1 -1.22753
ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide -1.22674
BHLHE23 basic helix-loop-helix family, member e23 -1.22412
LY86 lymphocyte antigen 86 -1.22043
TOMM40 translocase of outer mitochondrial membrane 40 homolog (yeast) -1.21755
DENND4C DENN/MADD domain containing 4C -1.21227
SPTLC3 serine palmitoyltransferase, long chain base subunit 3 -1.20719
HSF2 heat shock transcription factor 2 -1.19874
YAE1D1 Yae1 domain containing 1 -1.19851
CD19 CD19 molecule -1.18715
MORN5 MORN repeat containing 5 -1.18591
HUNK hormonally up-regulated Neu-associated kinase -1.18306
RPGRIP1L RPGRIP1-like -1.17413
GDF9 growth differentiation factor 9 -1.17335
IFNE interferon, epsilon -1.16657
OSR1 odd-skipped related transciption factor 1 -1.16369
EPHX1 epoxide hydrolase 1, microsomal (xenobiotic) -1.16136
TRIM55 tripartite motif containing 55 -1.16019
BOC BOC cell adhesion associated, oncogene regulated -1.15972
PATL2 protein associated with topoisomerase II homolog 2 (yeast) -1.15582
TSR3 TSR3, 20S rRNA accumulation, homolog (S. cerevisiae) -1.15516
PLD1 phospholipase D1, phosphatidylcholine-specific -1.15446
ADTRP androgen-dependent TFPI-regulating protein -1.15349
TRPV2 transient receptor potential cation channel, subfamily V, member 2 -1.14753
QRFP pyroglutamylated RFamide peptide -1.14625
ANKDD1B ankyrin repeat and death domain containing 1B -1.14575
C8ORF58 chromosome 8 open reading frame 58 -1.14096
MRGPRG MAS-related GPR, member G -1.13737
DGKZ diacylglycerol kinase, zeta -1.13086
ABHD2 abhydrolase domain containing 2 -1.12751
VGLL2 vestigial-like family member 2 -1.12733
TBX15 T-box 15 -1.12656
SMC1B structural maintenance of chromosomes 1B -1.12606
TFAP2B transcription factor AP-2 beta (activating enhancer binding protein 2 beta) -1.11912
SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 -1.11622
DNAH12 dynein, axonemal, heavy chain 12 -1.11432
CELA2A chymotrypsin-like elastase family, member 2A -1.1121
PSMB6 proteasome (prosome, macropain) subunit, beta type, 6 -1.10501
C11ORF91 chromosome 11 open reading frame 91 -1.104
PRADC1 protease-associated domain containing 1 -1.10232
MYBPC1 myosin binding protein C, slow type -1.10131
PRLHR prolactin releasing hormone receptor -1.09711
DNASE1L1 deoxyribonuclease I-like 1 -1.09698
CEP192 centrosomal protein 192kDa -1.09538
BET1 Bet1 golgi vesicular membrane trafficking protein -1.09233
CD22 CD22 molecule -1.08033
PRDM16 PR domain containing 16 -1.07992
SRD5A2 steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) -1.07406
BTK Bruton agammaglobulinemia tyrosine kinase -1.07363
MCM9 minichromosome maintenance complex component 9 -1.06722
SCN3A sodium channel, voltage gated, type III alpha subunit -1.06529
RCOR2 REST corepressor 2 -1.06367
PGR progesterone receptor -1.05891
EFHC1 EF-hand domain (C-terminal) containing 1 -1.05666
TRIM6-TRIM34 TRIM6-TRIM34 readthrough -1.05166
MPEG1 macrophage expressed 1 -1.04945
MOS v-mos Moloney murine sarcoma viral oncogene homolog -1.04675
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -1.04549
KLHDC8B kelch domain containing 8B -1.04228
TCOF1 Treacher Collins-Franceschetti syndrome 1 -1.04218
CDC73 cell division cycle 73 -1.0402
PPP1R3B protein phosphatase 1, regulatory subunit 3B -1.03972
HSPB6 heat shock protein, alpha-crystallin-related, B6 -1.03683
PTS 6-pyruvoyltetrahydropterin synthase -1.03591
RPA3 replication protein A3, 14kDa -1.03419
ATF6 activating transcription factor 6 -1.03152
C2ORF50 chromosome 2 open reading frame 50 -1.02787
P2RX2 purinergic receptor P2X, ligand gated ion channel, 2 -1.02311
IBSP integrin-binding sialoprotein -1.02093
SMPX small muscle protein, X-linked -1.0205
PSMD12 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 -1.01758
RNF41 ring finger protein 41, E3 ubiquitin protein ligase -1.01656
TMTC1 transmembrane and tetratricopeptide repeat containing 1 -1.0148
SLC25A31 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 -1.0136
HYKK hydroxylysine kinase -1.01339
TBC1D12 TBC1 domain family, member 12 -1.0074
MMP21 matrix metallopeptidase 21 -1.00484
PARP9 poly (ADP-ribose) polymerase family, member 9 -1.00115