RFX5_IMR-90_hg19_1 Gene Set

Dataset ENCODE Transcription Factor Binding Site Profiles
Category genomics
Type transcription factor binding site profile
Description transcription factor binding site profile identified as [transcription factor gene symbol]_[cell type]_[reference genome]_[replicate number] (Encyclopedia of DNA Elements)
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Genes

428 genes with transcription factor binding evidence in the RFX5_IMR-90_hg19_1 transcription factor binding site profile from the ENCODE Transcription Factor Binding Site Profiles dataset.

Symbol Name
AASS aminoadipate-semialdehyde synthase
ABAT 4-aminobutyrate aminotransferase
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2
ACAT2 acetyl-CoA acetyltransferase 2
ACTR1B ARP1 actin-related protein 1 homolog B, centractin beta (yeast)
ADGRB3 adhesion G protein-coupled receptor B3
ADGRL4 adhesion G protein-coupled receptor L4
ADORA2A adenosine A2a receptor
ADPRM ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent
AGFG2 ArfGAP with FG repeats 2
AIMP2 aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
AKAP13 A kinase (PRKA) anchor protein 13
ALDH6A1 aldehyde dehydrogenase 6 family, member A1
AMD1 adenosylmethionine decarboxylase 1
ANGPTL7 angiopoietin-like 7
ANKRD9 ankyrin repeat domain 9
ANXA6 annexin A6
AP1S2 adaptor-related protein complex 1, sigma 2 subunit
APOC1 apolipoprotein C-I
APOC1P1 apolipoprotein C-I pseudogene 1
APTX aprataxin
ARL15 ADP-ribosylation factor-like 15
ARVCF armadillo repeat gene deleted in velocardiofacial syndrome
ASB9 ankyrin repeat and SOCS box containing 9
ASF1B anti-silencing function 1B histone chaperone
ASXL1 additional sex combs like transcriptional regulator 1
ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
ATP6V0A1 ATPase, H+ transporting, lysosomal V0 subunit a1
ATRX alpha thalassemia/mental retardation syndrome X-linked
B2M beta-2-microglobulin
BBIP1 BBSome interacting protein 1
BBS12 Bardet-Biedl syndrome 12
BDNF brain-derived neurotrophic factor
BLOC1S3 biogenesis of lysosomal organelles complex-1, subunit 3
BTBD6 BTB (POZ) domain containing 6
BTN2A1 butyrophilin, subfamily 2, member A1
BTN2A2 butyrophilin, subfamily 2, member A2
BTN2A3P butyrophilin, subfamily 2, member A3, pseudogene
BTN3A1 butyrophilin, subfamily 3, member A1
BTN3A2 butyrophilin, subfamily 3, member A2
BTN3A3 butyrophilin, subfamily 3, member A3
C11ORF31 chromosome 11 open reading frame 31
C14ORF132 chromosome 14 open reading frame 132
C19ORF54 chromosome 19 open reading frame 54
C20ORF194 chromosome 20 open reading frame 194
C2ORF73 chromosome 2 open reading frame 73
CA13 carbonic anhydrase XIII
CA5B carbonic anhydrase VB, mitochondrial
CAPSL calcyphosine-like
CBX6 chromobox homolog 6
CCDC13 coiled-coil domain containing 13
CCDC173 coiled-coil domain containing 173
CCDC34 coiled-coil domain containing 34
CCNB1 cyclin B1
CCND1 cyclin D1
CCND2 cyclin D2
CCNG2 cyclin G2
CD72 CD72 molecule
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
CDCA2 cell division cycle associated 2
CDK4 cyclin-dependent kinase 4
CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
CDNF cerebral dopamine neurotrophic factor
CEBPB CCAAT/enhancer binding protein (C/EBP), beta
CEP120 centrosomal protein 120kDa
CEP164 centrosomal protein 164kDa
CETN4P centrin EF-hand protein 4, pseudogene
CHKA choline kinase alpha
CKAP2 cytoskeleton associated protein 2
CKS2 CDC28 protein kinase regulatory subunit 2
CNOT1 CCR4-NOT transcription complex, subunit 1
CNTN3 contactin 3 (plasmacytoma associated)
COMMD1 copper metabolism (Murr1) domain containing 1
COMMD7 COMM domain containing 7
COMT catechol-O-methyltransferase
COQ10A coenzyme Q10 homolog A (S. cerevisiae)
COX14 COX14 cytochrome c oxidase assembly factor
CRELD1 cysteine-rich with EGF-like domains 1
CRIP2 cysteine-rich protein 2
CSNK1D casein kinase 1, delta
CTU1 cytosolic thiouridylase subunit 1
CYP46A1 cytochrome P450, family 46, subfamily A, polypeptide 1
DCAF5 DDB1 and CUL4 associated factor 5
DCP2 decapping mRNA 2
DDB2 damage-specific DNA binding protein 2, 48kDa
DDIT4 DNA-damage-inducible transcript 4
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
DDX41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
DDX60L DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like
DENND4A DENN/MADD domain containing 4A
DHODH dihydroorotate dehydrogenase (quinone)
DHTKD1 dehydrogenase E1 and transketolase domain containing 1
DIP2A DIP2 disco-interacting protein 2 homolog A (Drosophila)
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1
DNAJB11 DnaJ (Hsp40) homolog, subfamily B, member 11
DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1
DNASE2 deoxyribonuclease II, lysosomal
DOCK7 dedicator of cytokinesis 7
DOHH deoxyhypusine hydroxylase/monooxygenase
DOLPP1 dolichyldiphosphatase 1
DPCD deleted in primary ciliary dyskinesia homolog (mouse)
DSCR3 Down syndrome critical region 3
DSE dermatan sulfate epimerase
DUSP28 dual specificity phosphatase 28
DUSP6 dual specificity phosphatase 6
DYRK1B dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
DYRK2 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
E2F6 E2F transcription factor 6
EBAG9 estrogen receptor binding site associated, antigen, 9
EID1 EP300 interacting inhibitor of differentiation 1
ELL elongation factor RNA polymerase II
EMC2 ER membrane protein complex subunit 2
EMC9 ER membrane protein complex subunit 9
EML2 echinoderm microtubule associated protein like 2
EML6 echinoderm microtubule associated protein like 6
ENSA endosulfine alpha
ENTPD3-AS1 ENTPD3 antisense RNA 1
ESCO1 establishment of sister chromatid cohesion N-acetyltransferase 1
ETV4 ets variant 4
EVI5L ecotropic viral integration site 5-like
FAM213A family with sequence similarity 213, member A
FAM214A family with sequence similarity 214, member A
FAM47E-STBD1 FAM47E-STBD1 readthrough
FAM60A family with sequence similarity 60, member A
FAM72D family with sequence similarity 72, member D
FAM81A family with sequence similarity 81, member A
FAR1 fatty acyl CoA reductase 1
FHAD1 forkhead-associated (FHA) phosphopeptide binding domain 1
FLJ13224 uncharacterized LOC79857
FLJ26850 FLJ26850 protein
FLJ45079 FLJ45079 protein
FOXA1 forkhead box A1
GADD45G growth arrest and DNA-damage-inducible, gamma
GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase
GATAD2A GATA zinc finger domain containing 2A
GBF1 golgi brefeldin A resistant guanine nucleotide exchange factor 1
GIPC1 GIPC PDZ domain containing family, member 1
GLA galactosidase, alpha
GMNC geminin coiled-coil domain containing
GMPPB GDP-mannose pyrophosphorylase B
GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2
GOLGB1 golgin B1
GOLPH3L golgi phosphoprotein 3-like
GOT1 glutamic-oxaloacetic transaminase 1, soluble
GPR150 G protein-coupled receptor 150
GPR3 G protein-coupled receptor 3
GRIK5 glutamate receptor, ionotropic, kainate 5
GTF2I general transcription factor IIi
GTF2IRD2 GTF2I repeat domain containing 2
GTF2IRD2B GTF2I repeat domain containing 2B
GTPBP1 GTP binding protein 1
GZMK granzyme K (granzyme 3; tryptase II)
H1FX H1 histone family, member X
H1FX-AS1 H1FX antisense RNA 1
HAUS2 HAUS augmin-like complex, subunit 2
HAUS5 HAUS augmin-like complex, subunit 5
HIST1H3A histone cluster 1, H3a
HIST1H4A histone cluster 1, H4a
HK2 hexokinase 2
HLA-DPB2 major histocompatibility complex, class II, DP beta 2 (pseudogene)
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1
HLA-DRB5 major histocompatibility complex, class II, DR beta 5
HLA-E major histocompatibility complex, class I, E
HLA-H major histocompatibility complex, class I, H (pseudogene)
HLA-L major histocompatibility complex, class I, L (pseudogene)
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase
HMGN3 high mobility group nucleosomal binding domain 3
HNRNPH2 heterogeneous nuclear ribonucleoprotein H2 (H')
HNRNPUL2 heterogeneous nuclear ribonucleoprotein U-like 2
HNRNPUL2-BSCL2 HNRNPUL2-BSCL2 readthrough (NMD candidate)
HOOK2 hook microtubule-tethering protein 2
HSD17B12 hydroxysteroid (17-beta) dehydrogenase 12
HSF2 heat shock transcription factor 2
HSF4 heat shock transcription factor 4
HSPA14 heat shock 70kDa protein 14
HYDIN HYDIN, axonemal central pair apparatus protein
IFI27 interferon, alpha-inducible protein 27
IFT57 intraflagellar transport 57
IGF2R insulin-like growth factor 2 receptor
INPP5J inositol polyphosphate-5-phosphatase J
INTS3 integrator complex subunit 3
IP6K2 inositol hexakisphosphate kinase 2
IQSEC1 IQ motif and Sec7 domain 1
ISCA1 iron-sulfur cluster assembly 1
ISCA2 iron-sulfur cluster assembly 2
JCHAIN joining chain of multimeric IgA and IgM
KANSL3 KAT8 regulatory NSL complex subunit 3
KCNAB2 potassium channel, voltage gated subfamily A regulatory beta subunit 2
KCNQ1OT1 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
KCTD9 potassium channel tetramerization domain containing 9
KDM4A lysine (K)-specific demethylase 4A
KIAA1549 KIAA1549
KLF9 Kruppel-like factor 9
KLRD1 killer cell lectin-like receptor subfamily D, member 1
KPNB1 karyopherin (importin) beta 1
LIN52 lin-52 DREAM MuvB core complex component
LINC00167 long intergenic non-protein coding RNA 167
LINC00265 long intergenic non-protein coding RNA 265
LOC100129518 uncharacterized LOC100129518
LOC100129917 uncharacterized LOC100129917
LOC100505658 uncharacterized LOC100505658
LOC100507217
LOC100507373 uncharacterized LOC100507373
LOC284009 uncharacterized LOC284009
LOC344967 acyl-CoA thioesterase 7 pseudogene
LOC389705 chromosome 4 open reading frame 27 pseudogene
LOC400548 uncharacterized LOC400548
LOC91450 uncharacterized LOC91450
LONRF1 LON peptidase N-terminal domain and ring finger 1
LOX lysyl oxidase
LRRC57 leucine rich repeat containing 57
LRRC73 leucine rich repeat containing 73
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1
LRTOMT leucine rich transmembrane and O-methyltransferase domain containing
LTBP4 latent transforming growth factor beta binding protein 4
LUZP1 leucine zipper protein 1
MAP3K14 mitogen-activated protein kinase kinase kinase 14
MAP9 microtubule-associated protein 9
MAPRE3 microtubule-associated protein, RP/EB family, member 3
MARK3 MAP/microtubule affinity-regulating kinase 3
MBNL2 muscleblind-like splicing regulator 2
MBOAT7 membrane bound O-acyltransferase domain containing 7
MEG3 maternally expressed 3 (non-protein coding)
MGST3 microsomal glutathione S-transferase 3
MIB2 mindbomb E3 ubiquitin protein ligase 2
MIR22HG MIR22 host gene
MIR2392 microRNA 2392
MIR3153 microRNA 3153
MIR3175 microRNA 3175
MIR4442 microRNA 4442
MOSPD3 motile sperm domain containing 3
MPV17L2 MPV17 mitochondrial membrane protein-like 2
MR1 major histocompatibility complex, class I-related
MRPL23 mitochondrial ribosomal protein L23
MSX2 msh homeobox 2
MT2A metallothionein 2A
MTMR12 myotubularin related protein 12
MTPAP mitochondrial poly(A) polymerase
MVD mevalonate (diphospho) decarboxylase
MXD1 MAX dimerization protein 1
MXD4 MAX dimerization protein 4
MYBPC2 myosin binding protein C, fast type
N4BP2 NEDD4 binding protein 2
NABP1 nucleic acid binding protein 1
NASP nuclear autoantigenic sperm protein (histone-binding)
NDUFB11 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa
NDUFV3 NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa
NEK10 NIMA-related kinase 10
NHP2 NHP2 ribonucleoprotein
NMRK1 nicotinamide riboside kinase 1
NPC2 Niemann-Pick disease, type C2
NPHP4 nephronophthisis 4
NPLOC4 nuclear protein localization 4 homolog (S. cerevisiae)
NRARP NOTCH-regulated ankyrin repeat protein
NUBPL nucleotide binding protein-like
NUMA1 nuclear mitotic apparatus protein 1
NUP98 nucleoporin 98kDa
NUPL2 nucleoporin like 2
NXNL2 nucleoredoxin-like 2
NXPH4 neurexophilin 4
OSTF1 osteoclast stimulating factor 1
OTUD5 OTU deubiquitinase 5
PAIP2B poly(A) binding protein interacting protein 2B
PCF11 PCF11 cleavage and polyadenylation factor subunit
PDCD4 programmed cell death 4 (neoplastic transformation inhibitor)
PDCL phosducin-like
PDGFC platelet derived growth factor C
PDXP pyridoxal (pyridoxine, vitamin B6) phosphatase
PER2 period circadian clock 2
PGAP2 post-GPI attachment to proteins 2
PHKA1 phosphorylase kinase, alpha 1 (muscle)
PHOSPHO2 phosphatase, orphan 2
PHOSPHO2-KLHL23 PHOSPHO2-KLHL23 readthrough
PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein
PICALM phosphatidylinositol binding clathrin assembly protein
PIK3IP1 phosphoinositide-3-kinase interacting protein 1
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
PJA2 praja ring finger 2, E3 ubiquitin protein ligase
PKM pyruvate kinase, muscle
PLCXD1 phosphatidylinositol-specific phospholipase C, X domain containing 1
PMS2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae)
PNRC1 proline-rich nuclear receptor coactivator 1
PNRC2 proline-rich nuclear receptor coactivator 2
POLD2 polymerase (DNA directed), delta 2, accessory subunit
POLL polymerase (DNA directed), lambda
POMT1 protein-O-mannosyltransferase 1
POU3F2 POU class 3 homeobox 2
PPP1R12B protein phosphatase 1, regulatory subunit 12B
PPP2R5D protein phosphatase 2, regulatory subunit B', delta
PRDM10 PR domain containing 10
PRDM4 PR domain containing 4
PRR11 proline rich 11
PSMB8 proteasome (prosome, macropain) subunit, beta type, 8
PSMD3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
PTMS parathymosin
PTPN4 protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
RAB40B RAB40B, member RAS oncogene family
RAB40C RAB40C, member RAS oncogene family
RAB4B RAB4B, member RAS oncogene family
RAB4B-EGLN2 RAB4B-EGLN2 readthrough (NMD candidate)
RAB6A RAB6A, member RAS oncogene family
RALA v-ral simian leukemia viral oncogene homolog A (ras related)
RAP2A RAP2A, member of RAS oncogene family
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2
RBM10 RNA binding motif protein 10
RBM23 RNA binding motif protein 23
RBM42 RNA binding motif protein 42
RCL1 RNA terminal phosphate cyclase-like 1
RECK reversion-inducing-cysteine-rich protein with kazal motifs
RFWD3 ring finger and WD repeat domain 3
RFX5 regulatory factor X, 5 (influences HLA class II expression)
RHEB Ras homolog enriched in brain
RHOQ ras homolog family member Q
RIBC1 RIB43A domain with coiled-coils 1
RMND5A required for meiotic nuclear division 5 homolog A (S. cerevisiae)
RNF103-CHMP3 RNF103-CHMP3 readthrough
RNF169 ring finger protein 169
RNF187 ring finger protein 187
ROCK1 Rho-associated, coiled-coil containing protein kinase 1
RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5
RSAD1 radical S-adenosyl methionine domain containing 1
RSG1 REM2 and RAB-like small GTPase 1
RSPH1 radial spoke head 1 homolog (Chlamydomonas)
RTN4RL1 reticulon 4 receptor-like 1
RUVBL1 RuvB-like AAA ATPase 1
S100PBP S100P binding protein
SBF2 SET binding factor 2
SBK2 SH3 domain binding kinase family, member 2
SCARF1 scavenger receptor class F, member 1
SCO1 SCO1 cytochrome c oxidase assembly protein
SDF2L1 stromal cell-derived factor 2-like 1
SENP2 SUMO1/sentrin/SMT3 specific peptidase 2
SEPT7P2 septin 7 pseudogene 2
SESN3 sestrin 3
SFRP1 secreted frizzled-related protein 1
SHC3 SHC (Src homology 2 domain containing) transforming protein 3
SHMT1 serine hydroxymethyltransferase 1 (soluble)
SHOC2 soc-2 suppressor of clear homolog (C. elegans)
SKA2 spindle and kinetochore associated complex subunit 2
SLC25A38 solute carrier family 25, member 38
SLC27A1 solute carrier family 27 (fatty acid transporter), member 1
SLC2A12 solute carrier family 2 (facilitated glucose transporter), member 12
SLC30A1 solute carrier family 30 (zinc transporter), member 1
SLC30A5 solute carrier family 30 (zinc transporter), member 5
SLC35D3 solute carrier family 35, member D3
SLFN12 schlafen family member 12
SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
SMC1A structural maintenance of chromosomes 1A
SNORD1A small nucleolar RNA, C/D box 1A
SNORD1B small nucleolar RNA, C/D box 1B
SNRNP40 small nuclear ribonucleoprotein 40kDa (U5)
SNRPA small nuclear ribonucleoprotein polypeptide A
SON SON DNA binding protein
SOX12 SRY (sex determining region Y)-box 12
SOX4 SRY (sex determining region Y)-box 4
SPG11 spastic paraplegia 11 (autosomal recessive)
SPTBN2 spectrin, beta, non-erythrocytic 2
SRF serum response factor (c-fos serum response element-binding transcription factor)
SRSF3 serine/arginine-rich splicing factor 3
SS18L2 synovial sarcoma translocation gene on chromosome 18-like 2
SSBP1 single-stranded DNA binding protein 1, mitochondrial
SSTR3 somatostatin receptor 3
STPG2 sperm-tail PG-rich repeat containing 2
SUOX sulfite oxidase
TAOK2 TAO kinase 2
TBCCD1 TBCC domain containing 1
TCAIM T cell activation inhibitor, mitochondrial
TEAD3 TEA domain family member 3
TEKT1 tektin 1
TFCP2 transcription factor CP2
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)
THADA thyroid adenoma associated
TICRR TOPBP1-interacting checkpoint and replication regulator
TMEM194A transmembrane protein 194A
TMEM231 transmembrane protein 231
TMEM243 transmembrane protein 243, mitochondrial
TNFAIP8 tumor necrosis factor, alpha-induced protein 8
TOB1 transducer of ERBB2, 1
TOB2 transducer of ERBB2, 2
TOMM40 translocase of outer mitochondrial membrane 40 homolog (yeast)
TOP1 topoisomerase (DNA) I
TOP2B topoisomerase (DNA) II beta 180kDa
TOR2A torsin family 2, member A
TP53INP1 tumor protein p53 inducible nuclear protein 1
TPP1 tripeptidyl peptidase I
TPP2 tripeptidyl peptidase II
TRAPPC6A trafficking protein particle complex 6A
TSEN34 TSEN34 tRNA splicing endonuclease subunit
TSPAN15 tetraspanin 15
TSPO translocator protein (18kDa)
TSPYL1 TSPY-like 1
TSPYL2 TSPY-like 2
TSPYL4 TSPY-like 4
TSPYL5 TSPY-like 5
TTC8 tetratricopeptide repeat domain 8
TTC9C tetratricopeptide repeat domain 9C
TUBA1A tubulin, alpha 1a
TXNRD2 thioredoxin reductase 2
TYK2 tyrosine kinase 2
UBALD2 UBA-like domain containing 2
UBAP1 ubiquitin associated protein 1
UBB ubiquitin B
UBTD2 ubiquitin domain containing 2
USP6NL USP6 N-terminal like
VCP valosin containing protein
VPS53 vacuolar protein sorting 53 homolog (S. cerevisiae)
WDR66 WD repeat domain 66
WDR81 WD repeat domain 81
XRCC1 X-ray repair complementing defective repair in Chinese hamster cells 1
YARS tyrosyl-tRNA synthetase
YPEL2 yippee-like 2 (Drosophila)
YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
ZC3H7A zinc finger CCCH-type containing 7A
ZCCHC17 zinc finger, CCHC domain containing 17
ZCCHC2 zinc finger, CCHC domain containing 2
ZER1 zyg-11 related, cell cycle regulator
ZFAND4 zinc finger, AN1-type domain 4
ZFAND6 zinc finger, AN1-type domain 6
ZNF20 zinc finger protein 20
ZNF365 zinc finger protein 365
ZNF429 zinc finger protein 429
ZNF487 zinc finger protein 487
ZNF490 zinc finger protein 490
ZNF574 zinc finger protein 574
ZNF672 zinc finger protein 672
ZNF70 zinc finger protein 70
ZNF791 zinc finger protein 791