NCI-SNU-16 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

54 genes with high or low copy number in NCI-SNU-16 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
WDR11-AS1 WDR11 antisense RNA 1 4.51153
WDR11 WD repeat domain 11 4.51153
MIR5694 microRNA 5694 4.51153
ATE1 arginyltransferase 1 3.12177
PPAPDC1A phosphatidic acid phosphatase type 2 domain containing 1A 3.12177
C11ORF74 chromosome 11 open reading frame 74 2.59653
RAG2 recombination activating gene 2 2.59653
FGFR2 fibroblast growth factor receptor 2 2.59653
TRAF6 TNF receptor-associated factor 6, E3 ubiquitin protein ligase 2.59653
RAG1 recombination activating gene 1 2.59653
PAMR1 peptidase domain containing associated with muscle regeneration 1 2.49065
FJX1 four jointed box 1 (Drosophila) 2.49065
TRIM44 tripartite motif containing 44 2.49065
MIR3973 microRNA 3973 2.49065
MIR1343 microRNA 1343 2.44392
APIP APAF1 interacting protein 2.44392
SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2 2.44392
PDHX pyruvate dehydrogenase complex, component X 2.44392
CD44 CD44 molecule (Indian blood group) 2.39327
FAM84B family with sequence similarity 84, member B 2.15847
LOC100507205 uncharacterized LOC100507205 2.12225
LRRC4C leucine rich repeat containing 4C 2.09431
COMMD9 COMM domain containing 9 2.09431
PRR5L proline rich 5 like 2.09431
LDLRAD3 low density lipoprotein receptor class A domain containing 3 2.09073
MIR1206 microRNA 1206 2.07612
MIR1207 microRNA 1207 2.07136
MIR1205 microRNA 1205 2.07136
MIR1208 microRNA 1208 2.07136
TMEM75 transmembrane protein 75 2.06401
POU5F1B POU class 5 homeobox 1B 2.05836
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
FOCAD focadhesin -2.7828
HACD4 3-hydroxyacyl-CoA dehydratase 4 -2.78237
IFNB1 interferon, beta 1, fibroblast -2.77588
IFNW1 interferon, omega 1 -2.77446
IFNA21 interferon, alpha 21 -2.77074
IFNA4 interferon, alpha 4 -2.7694
IFNA17 interferon, alpha 17 -2.76453
IFNA16 interferon, alpha 16 -2.76453
IFNA10 interferon, alpha 10 -2.75972
IFNA7 interferon, alpha 7 -2.75972
IFNA14 interferon, alpha 14 -2.75972
IFNA22P interferon, alpha 22, pseudogene -2.75555
IFNA5 interferon, alpha 5 -2.74973
KLHL9 kelch-like family member 9 -2.74526
ELAVL2 ELAV like neuron-specific RNA binding protein 2 -2.74526
IFNA6 interferon, alpha 6 -2.74032
IFNA13 interferon, alpha 13 -2.73798
IFNA2 interferon, alpha 2 -2.73608
IFNA8 interferon, alpha 8 -2.73024
IFNA1 interferon, alpha 1 -2.72828
IFNE interferon, epsilon -2.72466