NCI-H838 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

304 genes with high or low copy number in NCI-H838 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
MGAT4C MGAT4 family, member C 2.93899
OLFM3 olfactomedin 3 2.76305
DNAJA1P5 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5 2.76305
CYR61 cysteine-rich, angiogenic inducer, 61 2.64759
VAV3 vav 3 guanine nucleotide exchange factor 2.64759
BCL10 B-cell CLL/lymphoma 10 2.64759
LOC100129138 THAP domain containing, apoptosis associated protein 3 pseudogene 2.64759
MIR4423 microRNA 4423 2.64759
ATP1A1 ATPase, Na+/K+ transporting, alpha 1 polypeptide 2.64759
ZNF326 zinc finger protein 326 2.64759
ZNHIT6 zinc finger, HIT-type containing 6 2.64759
WDR63 WD repeat domain 63 2.64759
LOC646626 uncharacterized LOC646626 2.64759
C1ORF52 chromosome 1 open reading frame 52 2.64759
MCOLN3 mucolipin 3 2.64759
HAO2 hydroxyacid oxidase 2 (long chain) 2.64759
MIR320B1 microRNA 320b-1 2.64759
DDAH1 dimethylarginine dimethylaminohydrolase 1 2.64759
BRDT bromodomain, testis-specific 2.59653
LPAR3 lysophosphatidic acid receptor 3 2.59653
MIR1296 microRNA 1296 2.59653
ACTG1P4 actin gamma 1 pseudogene 4 2.59653
MIR548AV microRNA 548av 2.59653
RTKN2 rhotekin 2 2.59653
VANGL1 VANGL planar cell polarity protein 1 2.59653
NGF nerve growth factor (beta polypeptide) 2.59653
SLC22A15 solute carrier family 22, member 15 2.59653
ODF2L outer dense fiber of sperm tails 2-like 2.59653
RBMXL1 RNA binding motif protein, X-linked-like 1 2.59653
SYDE2 synapse defective 1, Rho GTPase, homolog 2 (C. elegans) 2.59653
GEMIN8P4 gem (nuclear organelle) associated protein 8 pseudogene 4 2.59653
TMEM26 transmembrane protein 26 2.59653
ARID5B AT rich interactive domain 5B (MRF1-like) 2.59653
C1ORF146 chromosome 1 open reading frame 146 2.59653
RNPC3 RNA-binding region (RNP1, RRM) containing 3 2.59653
GFI1 growth factor independent 1 transcription repressor 2.59653
EPHX4 epoxide hydrolase 4 2.59653
NRBF2 nuclear receptor binding factor 2 2.59653
LMO4 LIM domain only 4 2.59653
JMJD1C jumonji domain containing 1C 2.59653
NTNG1 netrin G1 2.59653
GLMN glomulin, FKBP associated protein 2.59653
ABCD3 ATP-binding cassette, sub-family D (ALD), member 3 2.59653
CLCA4 chloride channel accessory 4 2.59653
CLCA1 chloride channel accessory 1 2.59653
CLCA2 chloride channel accessory 2 2.59653
LRRC8D leucine rich repeat containing 8 family, member D 2.59653
LRRC8B leucine rich repeat containing 8 family, member B 2.59653
MCOLN2 mucolipin 2 2.59653
RPAP2 RNA polymerase II associated protein 2 2.59653
CASQ2 calsequestrin 2 (cardiac muscle) 2.59653
CCBL2 cysteine conjugate-beta lyase 2 2.59653
PRMT6 protein arginine methyltransferase 6 2.59653
F3 coagulation factor III (thromboplastin, tissue factor) 2.59653
SH3GLB1 SH3-domain GRB2-like endophilin B1 2.59653
GDAP2 ganglioside induced differentiation associated protein 2 2.59653
FLJ27354 uncharacterized LOC400761 2.59653
GTF2B general transcription factor IIB 2.59653
GBP6 guanylate binding protein family, member 6 2.59653
GBP1 guanylate binding protein 1, interferon-inducible 2.59653
GBP1P1 guanylate binding protein 1, interferon-inducible pseudogene 1 2.59653
COL24A1 collagen, type XXIV, alpha 1 2.59653
NHLH2 nescient helix loop helix 2 2.59653
WDR3 WD repeat domain 3 2.59653
HS2ST1 heparan sulfate 2-O-sulfotransferase 1 2.59653
C10ORF107 chromosome 10 open reading frame 107 2.59653
BTBD8 BTB (POZ) domain containing 8 2.59653
LRRC8C leucine rich repeat containing 8 family, member C 2.59653
CLCA3P chloride channel accessory 3, pseudogene 2.59653
GBP3 guanylate binding protein 3 2.59653
SEP15 15 kDa selenoprotein 2.59653
SPAG17 sperm associated antigen 17 2.59653
S1PR1 sphingosine-1-phosphate receptor 1 2.59653
SYT6 synaptotagmin VI 2.59653
KIAA1107 KIAA1107 2.59653
AMY2B amylase, alpha 2B (pancreatic) 2.59653
COL11A1 collagen, type XI, alpha 1 2.49065
GBP4 guanylate binding protein 4 2.49065
SLC30A7 solute carrier family 30 (zinc transporter), member 7 2.49065
EVI5 ecotropic viral integration site 5 2.49065
DNTTIP2 deoxynucleotidyltransferase, terminal, interacting protein 2 2.49065
SLC44A3 solute carrier family 44, member 3 2.49065
PKN2 protein kinase N2 2.49065
GBP7 guanylate binding protein 7 2.49065
CNN3 calponin 3, acidic 2.49065
SNX7 sorting nexin 7 2.49065
DNASE2B deoxyribonuclease II beta 2.49065
GBP5 guanylate binding protein 5 2.49065
TTLL7 tubulin tyrosine ligase-like family member 7 2.49065
GBP2 guanylate binding protein 2, interferon-inducible 2.49065
TBX15 T-box 15 2.49065
RWDD3 RWD domain containing 3 2.49065
TSHB thyroid stimulating hormone, beta 2.49065
LOC729987 uncharacterized LOC729987 2.49065
SAMD13 sterile alpha motif domain containing 13 2.49065
TMEM56 transmembrane protein 56 2.49065
LPPR5 lipid phosphate phosphatase-related protein type 5 2.49065
SNORD21 small nucleolar RNA, C/D box 21 2.49065
FAM69A family with sequence similarity 69, member A 2.49065
CTBS chitobiase, di-N-acetyl- 2.49065
LOC100129620 uncharacterized LOC100129620 2.49065
TGFBR3 transforming growth factor, beta receptor III 2.49065
GPR88 G protein-coupled receptor 88 2.49065
GCLM glutamate-cysteine ligase, modifier subunit 2.49065
LINC01555 long intergenic non-protein coding RNA 1555 2.49065
LOC729970 hCG2028352-like 2.49065
LOC729930 chromosome 11 open reading frame 74 pseudogene 2.49065
MIR760 microRNA 760 2.49065
TRIM33 tripartite motif containing 33 2.49065
ADO 2-aminoethanethiol (cysteamine) dioxygenase 2.49065
TSPAN2 tetraspanin 2 2.49065
RPF1 ribosome production factor 1 homolog (S. cerevisiae) 2.49065
MIR2682 microRNA 2682 2.49065
CDC7 cell division cycle 7 2.49065
CDC14A cell division cycle 14A 2.49065
DPH5 diphthamide biosynthesis 5 2.49065
SNORA66 small nucleolar RNA, H/ACA box 66 2.49065
VCAM1 vascular cell adhesion molecule 1 2.49065
TMEM56-RWDD3 TMEM56-RWDD3 readthrough 2.49065
RPL5 ribosomal protein L5 2.49065
EGR2 early growth response 2 2.49065
MIR137 microRNA 137 2.49065
SPATA1 spermatogenesis associated 1 2.49065
ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2.49065
WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 2.49065
EXTL2 exostosin-like glycosyltransferase 2 2.49065
MAB21L3 mab-21-like 3 (C. elegans) 2.49065
FLJ31662 uncharacterized LOC440594 2.49065
SSX2IP synovial sarcoma, X breakpoint 2 interacting protein 2.49065
ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 2.49065
UOX urate oxidase, pseudogene 2.49065
GNG5 guanine nucleotide binding protein (G protein), gamma 5 2.49065
ZNF365 zinc finger protein 365 2.49065
HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) 2.49065
SYCP1 synaptonemal complex protein 1 2.44392
NRAS neuroblastoma RAS viral (v-ras) oncogene homolog 2.44392
TMED5 transmembrane emp24 protein transport domain containing 5 2.44392
AP4B1-AS1 AP4B1 antisense RNA 1 2.44392
ARHGAP29 Rho GTPase activating protein 29 2.44392
PTBP2 polypyrimidine tract binding protein 2 2.44392
CCDC18 coiled-coil domain containing 18 2.44392
BCAR3 breast cancer anti-estrogen resistance 3 2.44392
BARHL2 BarH-like homeobox 2 2.44392
CSDE1 cold shock domain containing E1, RNA-binding 2.44392
RSBN1 round spermatid basic protein 1 2.44392
LPPR4 lipid phosphate phosphatase-related protein type 4 2.44392
LOC100131564 uncharacterized LOC100131564 2.44392
BCAS2 breast carcinoma amplified sequence 2 2.44392
OLFML3 olfactomedin-like 3 2.44392
AP4B1 adaptor-related protein complex 4, beta 1 subunit 2.44392
LOC100129046 uncharacterized LOC100129046 2.44392
PHTF1 putative homeodomain transcription factor 1 2.44392
MIG7 mig-7 2.44392
BCL2L15 BCL2-like 15 2.44392
AMPD1 adenosine monophosphate deaminase 1 2.44392
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2.44392
FNBP1L formin binding protein 1-like 2.44392
DCLRE1B DNA cross-link repair 1B 2.44392
PTPN22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) 2.44392
SIKE1 suppressor of IKBKE 1 2.44392
MTF2 metal response element binding transcription factor 2 2.44392
ZNF644 zinc finger protein 644 2.44392
DR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2) 2.44392
DENND2C DENN/MADD domain containing 2C 2.44392
HIPK1 homeodomain interacting protein kinase 1 2.44392
DPYD-AS1 DPYD antisense RNA 1 2.41451
RNU6-31P RNA, U6 small nuclear 31, pseudogene 2.39327
CBLN4 cerebellin 4 precursor 2.23324
MIR4756 microRNA 4756 2.22558
CYP24A1 cytochrome P450, family 24, subfamily A, polypeptide 1 2.22558
PFDN4 prefoldin subunit 4 2.22291
SUMO1P1 SUMO1 pseudogene 1 2.22291
ZNF217 zinc finger protein 217 2.22291
BCAS1 breast carcinoma amplified sequence 1 2.22291
SEC16B SEC16 homolog B (S. cerevisiae) 2.14116
ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 2.12703
MIR4719 microRNA 4719 2.12225
CD58 CD58 molecule 2.10992
IGSF3 immunoglobulin superfamily, member 3 2.10992
AMY2A amylase, alpha 2A (pancreatic) 2.10617
AMY1A amylase, alpha 1A (salivary) 2.10617
CNTNAP4 contactin associated protein-like 4 2.10038
MIR137HG MIR137 host gene 2.09431
PRKACB protein kinase, cAMP-dependent, catalytic, beta 2.09431
DPYD dihydropyrimidine dehydrogenase 2.08781
ALG10 ALG10, alpha-1,2-glucosyltransferase 2.07776
SLCO1B3 solute carrier organic anion transporter family, member 1B3 2.07346
FGD4 FYVE, RhoGEF and PH domain containing 4 2.07338
SLCO1B7 solute carrier organic anion transporter family, member 1B7 (non-functional) 2.07338
SLCO1B1 solute carrier organic anion transporter family, member 1B1 2.07338
IAPP islet amyloid polypeptide 2.07018
H3F3C H3 histone, family 3C 2.06989
RNU6-78P RNA, U6 small nuclear 78, pseudogene 2.06989
RECQL RecQ helicase-like 2.06989
PYROXD1 pyridine nucleotide-disulphide oxidoreductase domain 1 2.06989
KIAA1551 KIAA1551 2.06989
GOLT1B golgi transport 1B 2.06989
SLCO1A2 solute carrier organic anion transporter family, member 1A2 2.06707
SYT10 synaptotagmin X 2.06626
DENND5B-AS1 DENND5B antisense RNA 1 2.06626
PKP2 plakophilin 2 2.06626
METTL20 methyltransferase like 20 2.06626
GYS2 glycogen synthase 2 (liver) 2.06626
DNM1L dynamin 1-like 2.06626
AMN1 antagonist of mitotic exit network 1 homolog (S. cerevisiae) 2.06626
LDHB lactate dehydrogenase B 2.06626
DENND5B DENN/MADD domain containing 5B 2.06473
DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 2.06473
YARS2 tyrosyl-tRNA synthetase 2, mitochondrial 2.06473
TSPAN11 tetraspanin 11 2.06473
DDX11-AS1 DDX11 antisense RNA 1 2.06473
BICD1 bicaudal D homolog 1 (Drosophila) 2.06473
TMTC1 transmembrane and tetratricopeptide repeat containing 1 2.06316
FLJ13224 uncharacterized LOC79857 2.06316
KCNJ8 potassium channel, inwardly rectifying subfamily J, member 8 2.06316
LINC00941 long intergenic non-protein coding RNA 941 2.06316
FAM60A family with sequence similarity 60, member A 2.06316
OVOS2 ovostatin 2 2.06316
SNORA75 small nucleolar RNA, H/ACA box 75 2.06233
OVCH1-AS1 OVCH1 antisense RNA 1 2.0622
OVCH1 ovochymase 1 2.0622
IPO8 importin 8 2.0622
ERGIC2 ERGIC and golgi 2 2.0622
FAR2 fatty acyl CoA reductase 2 2.0622
CAPRIN2 caprin family member 2 2.0622
ST8SIA1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 2.0615
CMAS cytidine monophosphate N-acetylneuraminic acid synthetase 2.06105
ABCC9 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 2.06105
MRPS35 mitochondrial ribosomal protein S35 2.06061
CCDC91 coiled-coil domain containing 91 2.06061
KLHL42 kelch-like family member 42 2.06061
MANSC4 MANSC domain containing 4 2.06061
REP15 RAB15 effector protein 2.06061
ETNK1 ethanolamine kinase 1 2.05973
C2CD5 C2 calcium-dependent domain containing 5 2.05965
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 2.05965
PTHLH parathyroid hormone-like hormone 2.05965
SMCO2 single-pass membrane protein with coiled-coil domains 2 2.05942
C12ORF71 chromosome 12 open reading frame 71 2.05864
ARNTL2 aryl hydrocarbon receptor nuclear translocator-like 2 2.05864
TM7SF3 transmembrane 7 superfamily member 3 2.05864
MED21 mediator complex subunit 21 2.05864
FGFR1OP2 FGFR1 oncogene partner 2 2.05864
STK38L serine/threonine kinase 38 like 2.05778
BHLHE41 basic helix-loop-helix family, member e41 2.05778
ASUN asunder spermatogenesis regulator 2.05778
MIR920 microRNA 920 2.05673
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 2.05661
RASSF8-AS1 RASSF8 atnisense RNA 1 2.05661
MIR4302 microRNA 4302 2.05635
SSPN sarcospan 2.05635
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 2.0557
LINC00477 long intergenic non-protein coding RNA 477 2.05441
SOX5 SRY (sex determining region Y)-box 5 2.05408
BCAT1 branched chain amino-acid transaminase 1, cytosolic 2.05311
C12ORF77 chromosome 12 open reading frame 77 2.05311
LRMP lymphoid-restricted membrane protein 2.05242
LYRM5 LYR motif containing 5 2.0521
CASC1 cancer susceptibility candidate 1 2.0521
KRAS Kirsten rat sarcoma viral oncogene homolog 2.05093

low copy number

Symbol Name Standardized Value
SNX24 sorting nexin 24 -3.83684
PPIC peptidylprolyl isomerase C (cyclophilin C) -3.83684
ZNF681 zinc finger protein 681 -3.15836
RPSAP58 ribosomal protein SA pseudogene 58 -3.15836
HAVCR1P1 hepatitis A virus cellular receptor 1 pseudogene 1 -3.15179
ZNF675 zinc finger protein 675 -3.15179
ZNF726 zinc finger protein 726 -3.15179
ZNF724P zinc finger protein 724, pseudogene -3.12964
ZNF729 zinc finger protein 729 -3.12964
ZNF98 zinc finger protein 98 -3.12964
ZNF91 zinc finger protein 91 -3.12964
ZNF208 zinc finger protein 208 -3.12964
ZNF676 zinc finger protein 676 -3.11641
ZNF257 zinc finger protein 257 -3.11641
ZNF254 zinc finger protein 254 -3.07287
ZNF492 zinc finger protein 492 -3.05881
ZNF728 zinc finger protein 728 -3.05881
ZNF730 zinc finger protein 730 -3.05881
ZNF99 zinc finger protein 99 -3.05881
PDE4D phosphodiesterase 4D, cAMP-specific -2.83605
MIR4473 microRNA 4473 -2.82708
ZNF737 zinc finger protein 737 -2.82043
MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 -2.81841
ZNF826P zinc finger protein 826, pseudogene -2.81247
FOCAD focadhesin -2.7828
HACD4 3-hydroxyacyl-CoA dehydratase 4 -2.78237
IFNB1 interferon, beta 1, fibroblast -2.77588
IFNW1 interferon, omega 1 -2.77446
IFNA21 interferon, alpha 21 -2.77074
IFNA4 interferon, alpha 4 -2.7694
IFNA17 interferon, alpha 17 -2.76453
IFNA16 interferon, alpha 16 -2.76453
IFNA7 interferon, alpha 7 -2.75972
IFNA14 interferon, alpha 14 -2.75972
IFNA10 interferon, alpha 10 -2.75972
IFNA22P interferon, alpha 22, pseudogene -2.75555
IFNA5 interferon, alpha 5 -2.74973
KLHL9 kelch-like family member 9 -2.74526
IFNA6 interferon, alpha 6 -2.74032
IFNA13 interferon, alpha 13 -2.73798
IFNA2 interferon, alpha 2 -2.73608
IFNA8 interferon, alpha 8 -2.73024
IFNA1 interferon, alpha 1 -2.72828
IFNE interferon, epsilon -2.72466