NCI-H2342 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: adenocarcinoma; non-small cell lung cancer (Cell Line Ontology, CLO_0008073)
Similar Terms
Downloads & Tools

Genes

141 genes with high or low copy number in NCI-H2342 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
SLC16A7 solute carrier family 16 (monocarboxylate transporter), member 7 2.93899
LRIG3 leucine-rich repeats and immunoglobulin-like domains 3 2.93899
INHBC inhibin, beta C 2.49065
GLI1 GLI family zinc finger 1 2.44392
INHBE inhibin, beta E 2.44392
ARHGAP9 Rho GTPase activating protein 9 2.44392
MARS methionyl-tRNA synthetase 2.41451
DDIT3 DNA-damage-inducible transcript 3 2.41451
MBD6 methyl-CpG binding domain protein 6 2.41451
XRCC6BP1 XRCC6 binding protein 1 2.39327
DCTN2 dynactin 2 (p50) 2.39327
LOC100506844 uncharacterized LOC100506844 2.36889
METTL21B methyltransferase like 21B 2.3178
CTDSP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 2.3178
MIR26A2 microRNA 26a-2 2.3178
MARCH9 membrane-associated ring finger (C3HC4) 9 2.30944
METTL1 methyltransferase like 1 2.30944
CYP27B1 cytochrome P450, family 27, subfamily B, polypeptide 1 2.30944
AVIL advillin 2.30944
TSFM Ts translation elongation factor, mitochondrial 2.30944
PIP4K2C phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 2.30944
DTX3 deltex 3, E3 ubiquitin ligase 2.30944
TSPAN31 tetraspanin 31 2.283
SLC26A10 solute carrier family 26, member 10 2.283
ANKRD7 ankyrin repeat domain 7 2.283
B4GALNT1 beta-1,4-N-acetyl-galactosaminyl transferase 1 2.283
AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 2.283
NAA38 N(alpha)-acetyltransferase 38, NatC auxiliary subunit 2.283
CDK4 cyclin-dependent kinase 4 2.283
AGAP2-AS1 AGAP2 antisense RNA 1 2.283
ARHGEF25 Rho guanine nucleotide exchange factor (GEF) 25 2.283
CTTNBP2 cortactin binding protein 2 2.25904
MIR30D microRNA 30d 2.22633
MIR30B microRNA 30b 2.22633
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2.22558
ZFAT-AS1 ZFAT antisense RNA 1 2.22558
LOC286094 2.22558
ZFAT zinc finger and AT hook domain containing 2.22291
FAM83A-AS1 FAM83A antisense RNA 1 2.18778
FAM83A family with sequence similarity 83, member A 2.18778
DERL1 derlin 1 2.18778
ZHX2 zinc fingers and homeoboxes 2 2.18778
C8ORF76 chromosome 8 open reading frame 76 2.18124
MIR4663 microRNA 4663 2.18124
RNF139 ring finger protein 139 2.17694
KLHL38 kelch-like family member 38 2.17694
ATAD2 ATPase family, AAA domain containing 2 2.16947
TRMT12 tRNA methyltransferase 12 homolog (S. cerevisiae) 2.16947
WDYHV1 WDYHV motif containing 1 2.16947
FBXO32 F-box protein 32 2.16947
ZHX1 zinc fingers and homeoboxes 1 2.16947
ANXA13 annexin A13 2.16816
TMEM65 transmembrane protein 65 2.16816
MTSS1 metastasis suppressor 1 2.16816
TATDN1 TatD DNase domain containing 1 2.16816
NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 2.16816
FAM91A1 family with sequence similarity 91, member A1 2.16625
FER1L6-AS1 FER1L6 antisense RNA 1 2.16625
ZNF572 zinc finger protein 572 2.16564
FER1L6 fer-1-like family member 6 2.16459
SQLE squalene epoxidase 2.16459
KIAA0196 KIAA0196 2.16459
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 2.16307
TRIB1 tribbles pseudokinase 1 2.16176
CCDC26 CCDC26 long non-coding RNA 2.16091
LINC00861 long intergenic non-protein coding RNA 861 2.15967
FAM84B family with sequence similarity 84, member B 2.15847
R3HDM2 R3H domain containing 2 2.09073
PCAT1 prostate cancer associated transcript 1 (non-protein coding) 2.08634
KIF5A kinesin family member 5A 2.07776
MIR1206 microRNA 1206 2.07612
OS9 osteosarcoma amplified 9, endoplasmic reticulum lectin 2.0731
MIR1205 microRNA 1205 2.07136
MIR1208 microRNA 1208 2.07136
MIR1207 microRNA 1207 2.07136
TMEM75 transmembrane protein 75 2.06401
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
NDRG1 N-myc downstream regulated 1 2.05864
POU5F1B POU class 5 homeobox 1B 2.05836
WISP1 WNT1 inducible signaling pathway protein 1 2.05778
PRDM9 PR domain containing 9 2.05041
PMCHL1 pro-melanin-concentrating hormone-like 1, pseudogene 2.04969
CDH12 cadherin 12, type 2 (N-cadherin 2) 2.0489
GUSBP1 glucuronidase, beta pseudogene 1 2.0489
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C -5.12655
APOBEC3B apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B -3.53061
APOBEC3A_B APOBEC3A and APOBEC3B deletion hybrid -3.53061
MITF microphthalmia-associated transcription factor -3.39516
GPR27 G protein-coupled receptor 27 -3.32901
PROK2 prokineticin 2 -3.32901
EIF4E3 eukaryotic translation initiation factor 4E family member 3 -3.32901
MIR1284 microRNA 1284 -3.32901
GXYLT2 glucoside xylosyltransferase 2 -3.32901
SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor -3.32901
PDZRN3 PDZ domain containing ring finger 3 -3.2703
MIR4444-1 microRNA 4444-1 -3.15179
EBLN2 endogenous Bornavirus-like nucleoprotein 2 -3.14331
INTS4 integrator complex subunit 4 -3.1303
ZNF717 zinc finger protein 717 -3.12964
MIR4273 microRNA 4273 -3.12964
MIR1324 microRNA 1324 -3.12964
CNTN3 contactin 3 (plasmacytoma associated) -3.12964
FLJ20518 -3.12964
OR4M2 olfactory receptor, family 4, subfamily M, member 2 -3.0889
OR4N3P olfactory receptor, family 4, subfamily N, member 3 pseudogene -3.0889
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -3.08009
FOXP1 forkhead box P1 -3.08009
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) -3.06578
PPP4R2 protein phosphatase 4, regulatory subunit 2 -3.06578
OR4N4 olfactory receptor, family 4, subfamily N, member 4 -3.04873
GOLGA6L1 golgin A6 family-like 1 -3.03592
GOLGA8DP golgin A8 family, member D, pseudogene -3.03592
LOC646214 p21 protein (Cdc42/Rac)-activated kinase 2 pseudogene -3.01328
LOC727924 uncharacterized LOC727924 -2.95958
REREP3 arginine-glutamic acid dipeptide (RE) repeats pseudogene 3 -2.95921
SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 -2.92126
ABCC13 ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene -2.91612
ANKRD20A11P ankyrin repeat domain 20 family, member A11, pseudogene -2.91612
POTED POTE ankyrin domain family, member D -2.91612
HSPA13 heat shock protein 70kDa family, member 13 -2.91612
RBM11 RNA binding motif protein 11 -2.91268
CHEK2P2 checkpoint kinase 2 pseudogene 2 -2.89586
SAMSN1-AS1 SAMSN1 antisense RNA 1 -2.89373
LOC388813 uncharacterized protein ENSP00000383407-like -2.89373
CSMD1 CUB and Sushi multiple domains 1 -2.88947
LIPI lipase, member I -2.88947
NRIP1 nuclear receptor interacting protein 1 -2.8792
GOLGA6L6 golgin A6 family-like 6 -2.86179
GOLGA8CP golgin A8 family, member C, pseudogene -2.86179
HERC2P7 hect domain and RLD 2 pseudogene 7 -2.86179
MIR4509-1 microRNA 4509-1 -2.86134
NF1P2 neurofibromin 1 pseudogene 2 -2.8542
NBEAP1 neurobeachin pseudogene 1 -2.8542
POTEB POTE ankyrin domain family, member B -2.8542
HERC2P3 hect domain and RLD 2 pseudogene 3 -2.84875
FAM86DP family with sequence similarity 86, member D, pseudogene -2.84592
GSTT1 glutathione S-transferase theta 1 -2.78432
GSTTP2 glutathione S-transferase theta pseudogene 2 -2.78432
LOC391322 D-dopachrome tautomerase-like -2.78432