NCI-H23 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

67 genes with high or low copy number in NCI-H23 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
C11ORF24 chromosome 11 open reading frame 24 2.36889
SUV420H1 suppressor of variegation 4-20 homolog 1 (Drosophila) 2.35236
LRP5 low density lipoprotein receptor-related protein 5 2.3178
GAL galanin/GMAP prepropeptide 2.25904
MTL5 metallothionein-like 5, testis-specific (tesmin) 2.24845
KCNK9 potassium channel, two pore domain subfamily K, member 9 2.24139
CPT1A carnitine palmitoyltransferase 1A (liver) 2.24139
TRAPPC9 trafficking protein particle complex 9 2.2355
IGHMBP2 immunoglobulin mu binding protein 2 2.23078
MRPL21 mitochondrial ribosomal protein L21 2.23078
COL22A1 collagen, type XXII, alpha 1 2.22917
MRGPRD MAS-related GPR, member D 2.22783
FAM135B family with sequence similarity 135, member B 2.22633
MRGPRF MAS-related GPR, member F 2.22633
MIR30D microRNA 30d 2.22633
MIR30B microRNA 30b 2.22633
ZFAT-AS1 ZFAT antisense RNA 1 2.22558
LOC286094 2.22558
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2.22558
MIR3664 microRNA 3664 2.22291
SHANK2-AS3 SHANK2 antisense RNA 3 2.22291
ZFAT zinc finger and AT hook domain containing 2.22291
HHLA1 HERV-H LTR-associating 1 2.21258
TPCN2 two pore segment channel 2 2.21258
OC90 otoconin 90 2.21096
EFR3A EFR3 homolog A (S. cerevisiae) 2.21096
ADCY8 adenylate cyclase 8 (brain) 2.19301
MIR548K microRNA 548k 2.16564
FADD Fas (TNFRSF6)-associated via death domain 2.16564
MYEOV myeloma overexpressed 2.16459
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 2.16459
ANO1 anoctamin 1, calcium activated chloride channel 2.16307
CTTN cortactin 2.16307
FGF3 fibroblast growth factor 3 2.16307
FGF4 fibroblast growth factor 4 2.16176
CCDC26 CCDC26 long non-coding RNA 2.16091
CCND1 cyclin D1 2.1605
FGF19 fibroblast growth factor 19 2.1605
ORAOV1 oral cancer overexpressed 1 2.16017
PCAT1 prostate cancer associated transcript 1 (non-protein coding) 2.08634
MIR1206 microRNA 1206 2.07612
MIR1207 microRNA 1207 2.07136
MIR1208 microRNA 1208 2.07136
MIR1205 microRNA 1205 2.07136
PPP6R3 protein phosphatase 6, regulatory subunit 3 2.06989
TMEM75 transmembrane protein 75 2.06401
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
NDRG1 N-myc downstream regulated 1 2.05864
POU5F1B POU class 5 homeobox 1B 2.05836
WISP1 WNT1 inducible signaling pathway protein 1 2.05778
SLA Src-like-adaptor 2.05778
HPYR1 Helicobacter pylori responsive 1 (non-protein coding) 2.05635
LRRC6 leucine rich repeat containing 6 2.0557
PHF20L1 PHD finger protein 20-like 1 2.05441
SHANK2-AS1 SHANK2 antisense RNA 1 2.05422
TMEM71 transmembrane protein 71 2.05422
KCNQ3 potassium channel, voltage gated KQT-like subfamily Q, member 3 2.054
TG thyroglobulin 2.054
SHANK2 SH3 and multiple ankyrin repeat domains 2 2.04969
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
ANKRD20A12P ankyrin repeat domain 20 family, member A12, pseudogene -3.24687
OR2T11 olfactory receptor, family 2, subfamily T, member 11 (gene/pseudogene) -2.78432
OR2T10 olfactory receptor, family 2, subfamily T, member 10 -2.78237
CNTNAP3B contactin associated protein-like 3B -2.7778
PSG4 pregnancy specific beta-1-glycoprotein 4 -2.75301
LOC284344 uncharacterized LOC284344 -2.74526