NCI-H2030 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: adenocarcinoma; non-small cell lung cancer (lung primary) (Cell Line Ontology, CLO_0008041)
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Genes

56 genes with high or low copy number in NCI-H2030 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
CPS1 carbamoyl-phosphate synthase 1, mitochondrial 4.51153
CASP10 caspase 10, apoptosis-related cysteine peptidase 4.51153
CPS1-IT1 CPS1 intronic transcript 1 4.51153
CFLAR-AS1 CFLAR antisense RNA 1 4.51153
FAM126B family with sequence similarity 126, member B 4.51153
CFLAR CASP8 and FADD-like apoptosis regulator 4.51153
MYL1 myosin, light chain 1, alkali; skeletal, fast 4.51153
NDUFB3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa 4.51153
ACADL acyl-CoA dehydrogenase, long chain 4.51153
LANCL1 LanC lantibiotic synthetase component C-like 1 (bacterial) 4.51153
RPE ribulose-5-phosphate-3-epimerase 4.51153
KANSL1L KAT8 regulatory NSL complex subunit 1-like 4.51153
C1QTNF1 C1q and tumor necrosis factor related protein 1 2.76305
C1QTNF1-AS1 C1QTNF1 antisense RNA 1 2.76305
RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 2.76305
CANT1 calcium activated nucleotidase 1 2.76305
LGALS3BP lectin, galactoside-binding, soluble, 3 binding protein 2.76305
ENGASE endo-beta-N-acetylglucosaminidase 2.76305
TIMP2 TIMP metallopeptidase inhibitor 2 2.64759
USP36 ubiquitin specific peptidase 36 2.59653
CYTH1 cytohesin 1 2.59653
LINC00226 long intergenic non-protein coding RNA 226 2.04712

low copy number

Symbol Name Standardized Value
GYG2 glycogenin 2 -3.49112
ARSE arylsulfatase E (chondrodysplasia punctata 1) -3.49112
ARSD arylsulfatase D -3.49112
XG Xg blood group -3.49112
TOM1L1 target of myb1 (chicken)-like 1 -3.36169
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 -3.03082
FAM9B family with sequence similarity 9, member B -2.9644
ANOS1 anosmin 1 -2.9644
FAM9A family with sequence similarity 9, member A -2.9644
VCX3B variable charge, X-linked 3B -2.93416
LRP1B low density lipoprotein receptor-related protein 1B -2.91612
LOC389906 zinc finger protein 839 pseudogene -2.91268
MIR4770 microRNA 4770 -2.91268
WWC3 WWC family member 3 -2.91268
LOC100288814 -2.91268
CLCN4 chloride channel, voltage-sensitive 4 -2.91268
VCX3A variable charge, X-linked 3A -2.88947
ARSF arylsulfatase F -2.88947
LINC01546 long intergenic non-protein coding RNA 1546 -2.88947
NLGN4X neuroligin 4, X-linked -2.88947
ARSH arylsulfatase family, member H -2.88947
MXRA5 matrix-remodelling associated 5 -2.88947
PRKX protein kinase, X-linked -2.88947
TBL1X transducin (beta)-like 1X-linked -2.87802
SHROOM2 shroom family member 2 -2.87802
GPR143 G protein-coupled receptor 143 -2.87269
VCX2 variable charge, X-linked 2 -2.87269
MIR651 microRNA 651 -2.86624
VCX variable charge, X-linked -2.85607
PNPLA4 patatin-like phospholipase domain containing 4 -2.85607
PDE4D phosphodiesterase 4D, cAMP-specific -2.83605
MIR4767 microRNA 4767 -2.82043
HDHD1 haloacid dehalogenase-like hydrolase domain containing 1 -2.80688
STS steroid sulfatase (microsomal), isozyme S -2.7778