NCI-H2029 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: carcinoma; small cell lung cancer (lung primary) (Cell Line Ontology, CLO_0008040)
Similar Terms
Downloads & Tools

Genes

159 genes with high or low copy number in NCI-H2029 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
TSPYL4 TSPY-like 4 4.51153
NT5DC1 5'-nucleotidase domain containing 1 4.51153
RSPH4A radial spoke head 4 homolog A (Chlamydomonas) 4.51153
UBE3D ubiquitin protein ligase E3D 4.51153
FAM26D family with sequence similarity 26, member D 4.51153
FAM162B family with sequence similarity 162, member B 4.51153
FAM26F family with sequence similarity 26, member F 4.51153
FAM26E family with sequence similarity 26, member E 4.51153
TPBG trophoblast glycoprotein 4.51153
RWDD1 RWD domain containing 1 4.51153
KPNA5 karyopherin alpha 5 (importin alpha 6) 4.51153
TRAPPC3L trafficking protein particle complex 3-like 4.51153
ZUFSP zinc finger with UFM1-specific peptidase domain 4.51153
GPRC6A G protein-coupled receptor, class C, group 6, member A 3.12177
RFX6 regulatory factor X, 6 3.12177
PSMB11 proteasome (prosome, macropain) subunit, beta type, 11 2.93899
SF3A3 splicing factor 3a, subunit 3, 60kDa 2.93899
CEBPE CCAAT/enhancer binding protein (C/EBP), epsilon 2.93899
C14ORF93 chromosome 14 open reading frame 93 2.93899
LRP10 low density lipoprotein receptor-related protein 10 2.93899
MMP14 matrix metallopeptidase 14 (membrane-inserted) 2.93899
MRPL52 mitochondrial ribosomal protein L52 2.93899
PSMB5 proteasome (prosome, macropain) subunit, beta type, 5 2.93899
PRMT5 protein arginine methyltransferase 5 2.93899
CDH24 cadherin 24, type 2 2.93899
ACIN1 apoptotic chromatin condensation inducer 1 2.93899
RBM23 RNA binding motif protein 23 2.93899
C14ORF119 chromosome 14 open reading frame 119 2.93899
AJUBA ajuba LIM protein 2.93899
REM2 RAS (RAD and GEM)-like GTP binding 2 2.93899
MIR4707 microRNA 4707 2.93899
HAUS4 HAUS augmin-like complex, subunit 4 2.93899
UTP11L UTP11-like, U3 small nucleolar ribonucleoprotein (yeast) 2.76305
INPP5B inositol polyphosphate-5-phosphatase, 75kDa 2.76305
POU3F1 POU class 3 homeobox 1 2.76305
SLC7A8 solute carrier family 7 (amino acid transporter light chain, L system), member 8 2.76305
SLC7A7 solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 2.76305
NGDN neuroguidin, EIF4E binding protein 2.76305
ZFHX2 zinc finger homeobox 2 2.76305
MIR208B microRNA 208b 2.76305
FHL3 four and a half LIM domains 3 2.76305
THTPA thiamine triphosphatase 2.76305
MIR3659 microRNA 3659 2.76305
STXBP6 syntaxin binding protein 6 (amisyn) 2.76305
BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2.64759
HOMEZ homeobox and leucine zipper encoding 2.64759
SLC22A17 solute carrier family 22, member 17 2.64759
EFS embryonal Fyn-associated substrate 2.64759
MIR208A microRNA 208a 2.64759
PPP1R3E protein phosphatase 1, regulatory subunit 3E 2.64759
BCL2L2 BCL2-like 2 2.64759
MYH6 myosin, heavy chain 6, cardiac muscle, alpha 2.64759
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2.64759
MYH7 myosin, heavy chain 7, cardiac muscle, beta 2.64759
EDN2 endothelin 2 2.64759
IL25 interleukin 25 2.64759
CMTM5 CKLF-like MARVEL transmembrane domain containing 5 2.64759
PABPN1 poly(A) binding protein, nuclear 1 2.64759
RRAGC Ras-related GTP binding C 2.59653
GJA9 gap junction protein, alpha 9, 59kDa 2.59653
NDUFS5 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) 2.59653
MYCBP MYC binding protein 2.59653
GJA9-MYCBP GJA9-MYCBP readthrough 2.49065
AKIRIN1 akirin 1 2.49065
RHBDL2 rhomboid, veinlet-like 2 (Drosophila) 2.49065
MIR30C1 microRNA 30c-1 2.44392
MIR30E microRNA 30e 2.44392
SCMH1 sex comb on midleg homolog 1 (Drosophila) 2.39327
CITED4 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 2.39327
NFYC nuclear transcription factor Y, gamma 2.39327
KCNQ4 potassium channel, voltage gated KQT-like subfamily Q, member 4 2.39327
SLFNL1 schlafen-like 1 2.39327
RIMS3 regulating synaptic membrane exocytosis 3 2.39327
SLFNL1-AS1 SLFNL1 antisense RNA 1 2.39327
KIAA0754 KIAA0754 2.39327
CTPS1 CTP synthase 1 2.39327
CFL2 cofilin 2 (muscle) 2.35236
AP4S1 adaptor-related protein complex 4, sigma 1 subunit 2.35236
SNORA55 small nucleolar RNA, H/ACA box 55 2.35236
ZNF684 zinc finger protein 684 2.35236
EXO5 exonuclease 5 2.35236
PABPC4 poly(A) binding protein, cytoplasmic 4 (inducible form) 2.35236
PPIEL peptidylprolyl isomerase E-like pseudogene 2.35236
MACF1 microtubule-actin crosslinking factor 1 2.35236
ZFP69B ZFP69 zinc finger protein B 2.35236
EGLN3 egl-9 family hypoxia-inducible factor 3 2.35236
MIR624 microRNA 624 2.35236
ZFP69 ZFP69 zinc finger protein 2.35236
IGBP1P1 immunoglobulin (CD79A) binding protein 1 pseudogene 1 2.3178
EAPP E2F-associated phosphoprotein 2.3178
SRP54 signal recognition particle 54kDa 2.3178
SPTSSA serine palmitoyltransferase, small subunit A 2.3178
BAZ1A bromodomain adjacent to zinc finger domain, 1A 2.3178
FAM177A1 family with sequence similarity 177, member A1 2.3178
COL9A2 collagen, type IX, alpha 2 2.3178
STRN3 striatin, calmodulin binding protein 3 2.3178
HECTD1 HECT domain containing E3 ubiquitin protein ligase 1 2.3178
SNX6 sorting nexin 6 2.3178
HEYL hes-related family bHLH transcription factor with YRPW motif-like 2.3178
SMAP2 small ArfGAP2 2.3178
PSMA6 proteasome (prosome, macropain) subunit, alpha type, 6 2.30944
BMP8A bone morphogenetic protein 8a 2.30944
PPT1 palmitoyl-protein thioesterase 1 2.30944
ZMPSTE24 zinc metallopeptidase STE24 2.30944
KIAA0391 KIAA0391 2.30944
NT5C1A 5'-nucleotidase, cytosolic IA 2.30944
PPP2R3C protein phosphatase 2, regulatory subunit B'', gamma 2.30944
TMCO2 transmembrane and coiled-coil domains 2 2.30944
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 2.283
AKAP6 A kinase (PRKA) anchor protein 6 2.283
RLF rearranged L-myc fusion 2.283
GPR33 G protein-coupled receptor 33 (gene/pseudogene) 2.283
HEATR5A HEAT repeat containing 5A 2.283
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) 2.283
HPCAL4 hippocalcin like 4 2.283
DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2.283
ARHGAP5 Rho GTPase activating protein 5 2.26395
BRMS1L breast cancer metastasis-suppressor 1-like 2.26395
INSM2 insulinoma-associated 2 2.26395
LINC00609 long intergenic non-protein coding RNA 609 2.26395
PTCSC3 papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) 2.26395
RALGAPA1 Ral GTPase activating protein, alpha subunit 1 (catalytic) 2.26395
NUBPL nucleotide binding protein-like 2.26395
ARHGAP5-AS1 ARHGAP5 antisense RNA 1 (head to head) 2.26395
MFSD2A major facilitator superfamily domain containing 2A 2.25904
BMP8B bone morphogenetic protein 8b 2.24845
SFTA3 surfactant associated 3 2.24845
PPIE peptidylprolyl isomerase E (cyclophilin E) 2.24845
OXCT2 3-oxoacid CoA transferase 2 2.24845
MBIP MAP3K12 binding inhibitory protein 1 2.24845
TRIT1 tRNA isopentenyltransferase 1 2.24139
DPPA3 developmental pluripotency associated 3 2.22917
TSPYL1 TSPY-like 1 2.15316
DSE dermatan sulfate epimerase 2.15316
NPAS3 neuronal PAS domain protein 3 2.0731

low copy number

Symbol Name Standardized Value
LINC00559 long intergenic non-protein coding RNA 559 -3.41265
SPRY2 sprouty homolog 2 (Drosophila) -3.39516
MIR4500HG MIR4500 host gene -3.36169
LINC00353 long intergenic non-protein coding RNA 353 -3.36169
MIR4500 microRNA 4500 -3.36169
SLITRK5 SLIT and NTRK-like family, member 5 -3.36169
LINC00433 long intergenic non-protein coding RNA 433 -3.32901
ARHGEF16 Rho guanine nucleotide exchange factor (GEF) 16 -3.2703
MEGF6 multiple EGF-like-domains 6 -3.2703
PRDM16 PR domain containing 16 -3.2703
WRAP73 WD repeat containing, antisense to TP73 -3.24687
TPRG1L tumor protein p63 regulated 1-like -3.24687
LINC00351 long intergenic non-protein coding RNA 351 -3.15179
SLITRK6 SLIT and NTRK-like family, member 6 -3.14331
LINC00333 long intergenic non-protein coding RNA 333 -3.06578
SLITRK1 SLIT and NTRK-like family, member 1 -3.06578
CEP104 centrosomal protein 104kDa -3.05196
C1ORF174 chromosome 1 open reading frame 174 -3.05196
SMIM1 small integral membrane protein 1 (Vel blood group) -3.05196
DFFB DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) -3.05196
LRRC47 leucine rich repeat containing 47 -3.05196
CCDC27 coiled-coil domain containing 27 -3.05196
TP73-AS1 TP73 antisense RNA 1 -3.05196
TP73 tumor protein p73 -2.99615