NCI-H2023 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: adenocarcinoma; non-small cell lung cancer (lung primary) (Cell Line Ontology, CLO_0008039)
Similar Terms
Downloads & Tools

Genes

91 genes with high or low copy number in NCI-H2023 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
SLC25A2 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 4.51153
PCDHGB3 protocadherin gamma subfamily B, 3 4.51153
SPRY4 sprouty homolog 4 (Drosophila) 4.51153
ARSI arylsulfatase family, member I 4.51153
LOC100505658 uncharacterized LOC100505658 4.51153
PCDHGA12 protocadherin gamma subfamily A, 12 4.51153
PCDHGA11 protocadherin gamma subfamily A, 11 4.51153
ATOX1 antioxidant 1 copper chaperone 4.51153
PCDH1 protocadherin 1 4.51153
GLRA1 glycine receptor, alpha 1 4.51153
NDFIP1 Nedd4 family interacting protein 1 4.51153
PDGFRB platelet-derived growth factor receptor, beta polypeptide 4.51153
RPRM reprimo, TP53 dependent G2 arrest mediator candidate 4.51153
TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa 4.51153
PCDHGB4 protocadherin gamma subfamily B, 4 4.51153
PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta 4.51153
SLC26A2 solute carrier family 26 (anion exchanger), member 2 4.51153
SLC6A7 solute carrier family 6 (neurotransmitter transporter), member 7 4.51153
PCDHGC5 protocadherin gamma subfamily C, 5 4.51153
PCDHGC4 protocadherin gamma subfamily C, 4 4.51153
PCDHGC3 protocadherin gamma subfamily C, 3 4.51153
GNPDA1 glucosamine-6-phosphate deaminase 1 4.51153
MIR5197 microRNA 5197 4.51153
PCDHGA9 protocadherin gamma subfamily A, 9 4.51153
CDX1 caudal type homeobox 1 4.51153
PCDHGA10 protocadherin gamma subfamily A, 10 4.51153
RNF14 ring finger protein 14 4.51153
ARAP3 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 4.51153
RELL2 RELT-like 2 4.51153
PDE6A phosphodiesterase 6A, cGMP-specific, rod, alpha 4.51153
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 4.51153
HMGXB3 HMG box domain containing 3 4.51153
PCDHGB5 protocadherin gamma subfamily B, 5 4.51153
PCDHGB6 protocadherin gamma subfamily B, 6 4.51153
CAMK2A calcium/calmodulin-dependent protein kinase II alpha 4.51153
KIAA0141 KIAA0141 4.51153
DIAPH1 diaphanous-related formin 1 4.51153
PCDHGA5 protocadherin gamma subfamily A, 5 4.51153
PCDHGA4 protocadherin gamma subfamily A, 4 4.51153
PCDHGA7 protocadherin gamma subfamily A, 7 4.51153
PCDHGA1 protocadherin gamma subfamily A, 1 4.51153
PCDHGA3 protocadherin gamma subfamily A, 3 4.51153
PCDHGA2 protocadherin gamma subfamily A, 2 4.51153
PCDHGA8 protocadherin gamma subfamily A, 8 4.51153
PCDH12 protocadherin 12 4.51153
ARHGAP26-AS1 ARHGAP26 antisense RNA 1 4.51153
ARHGEF37 Rho guanine nucleotide exchange factor (GEF) 37 4.51153
FGF1 fibroblast growth factor 1 (acidic) 4.51153
FCHSD1 FCH and double SH3 domains 1 4.51153
LOC100652758 uncharacterized LOC100652758 4.51153
LOC729080 glycine cleavage system protein H (aminomethyl carrier) pseudogene 4.51153
PCDHGA6 protocadherin gamma subfamily A, 6 4.51153
HDAC3 histone deacetylase 3 4.51153
CSF1R colony stimulating factor 1 receptor 4.51153
TIGD6 tigger transposable element derived 6 4.51153
ARHGAP26 Rho GTPase activating protein 26 4.51153
PCDHGB8P protocadherin gamma subfamily B, 8 pseudogene 4.51153
PCDHGB2 protocadherin gamma subfamily B, 2 4.51153
PCDHGB7 protocadherin gamma subfamily B, 7 4.51153
PCDHGB1 protocadherin gamma subfamily B, 1 4.51153
MIR143HG MIR143 host gene 3.12177
MIR143 microRNA 143 3.12177
GZMK granzyme K (granzyme 3; tryptase II) 3.12177
GZMA granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) 3.12177
ESM1 endothelial cell-specific molecule 1 3.12177
MIR449B microRNA 449b 2.93899
MIR449A microRNA 449a 2.93899
GPX8 glutathione peroxidase 8 (putative) 2.93899
ACTBL2 actin, beta-like 2 2.93899
MIR449C microRNA 449c 2.93899
CDC20B cell division cycle 20B 2.93899
PRELID2 PRELI domain containing 2 2.76305
GRXCR2 glutaredoxin, cysteine rich 2 2.76305
LARS leucyl-tRNA synthetase 2.64759
PLAC8L1 PLAC8-like 1 2.64759
SH3RF2 SH3 domain containing ring finger 2 2.64759
NR4A2 nuclear receptor subfamily 4, group A, member 2 2.15316
GALNT5 polypeptide N-acetylgalactosaminyltransferase 5 2.15316
G3BP1 GTPase activating protein (SH3 domain) binding protein 1 2.15316
ERMN ermin, ERM-like protein 2.15316
GALNT13 polypeptide N-acetylgalactosaminyltransferase 13 2.14311
LOC100144595 uncharacterized LOC100144595 2.14116
CSNK1A1 casein kinase 1, alpha 1 2.14116
ACVR1C activin A receptor, type IC 2.14116
CYTIP cytohesin 1 interacting protein 2.14116
GPD2 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) 2.14116
GPBP1 GC-rich promoter binding protein 1 2.12703
ACVR1 activin A receptor, type I 2.12703
KCNJ3 potassium channel, inwardly rectifying subfamily J, member 3 2.12703

low copy number

Symbol Name Standardized Value
GRID2 glutamate receptor, ionotropic, delta 2 -3.53061
BTNL3 butyrophilin-like 3 -2.72661