NCI-H1993 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: adenocarcinoma; non-small cell lung cancer (lung primary) (Cell Line Ontology, CLO_0008036)
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Genes

605 genes with high or low copy number in NCI-H1993 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 4.51153
C12ORF66 chromosome 12 open reading frame 66 4.51153
C12ORF56 chromosome 12 open reading frame 56 4.51153
TMEM5 transmembrane protein 5 4.51153
DPY19L2 dpy-19-like 2 (C. elegans) 4.51153
WIF1 WNT inhibitory factor 1 3.12177
PNMA3 paraneoplastic Ma antigen 3 3.12177
PNMA6A paraneoplastic Ma antigen family member 6A 3.12177
MAGEA1 melanoma antigen family A1 3.12177
XPOT exportin, tRNA 3.12177
NSDHL NAD(P) dependent steroid dehydrogenase-like 3.12177
ZNF185 zinc finger protein 185 (LIM domain) 3.12177
CETN2 centrin, EF-hand protein, 2 3.12177
PNMA5 paraneoplastic Ma antigen family member 5 3.12177
ZNF275 zinc finger protein 275 3.12177
PNMA6B paraneoplastic Ma antigen family member 6B (pseudogene) 3.12177
TBK1 TANK-binding kinase 1 2.93899
CAPS2 calcyphosine 2 2.93899
POLR2J2 polymerase (RNA) II (DNA directed) polypeptide J2 2.93899
LOC100507377 uncharacterized LOC100507377 2.93899
MIR4467 microRNA 4467 2.93899
GLIPR1L2 GLI pathogenesis-related 1 like 2 2.93899
GLIPR1L1 GLI pathogenesis-related 1 like 1 2.93899
ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 2.93899
MIR5090 microRNA 5090 2.93899
LEMD3 LEM domain containing 3 2.93899
LRWD1 leucine-rich repeats and WD repeat domain containing 1 2.93899
POLR2J3 polymerase (RNA) II (DNA directed) polypeptide J3 2.93899
POLR2J polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa 2.93899
KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) 2.93899
SPDYE2B speedy/RINGO cell cycle regulator family member E2B 2.93899
RASA4B RAS p21 protein activator 4B 2.93899
TBC1D30 TBC1 domain family, member 30 2.93899
GLIPR1 GLI pathogenesis-related 1 2.93899
LOC100289561 uncharacterized LOC100289561 2.76305
IL26 interleukin 26 2.76305
MIR548Z microRNA 548z 2.76305
GNS glucosamine (N-acetyl)-6-sulfatase 2.76305
ORAI2 ORAI calcium release-activated calcium modulator 2 2.76305
LOC100630923 LOC100289561-PRKRIP1 readthrough 2.76305
MIR548C microRNA 548c 2.76305
SNORA70 small nucleolar RNA, H/ACA box 70 2.76305
RASSF3 Ras association (RalGDS/AF-6) domain family member 3 2.76305
ALKBH4 alkB, alkylation repair homolog 4 (E. coli) 2.76305
IL22 interleukin 22 2.76305
IFNG interferon, gamma 2.76305
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) 2.76305
FLJ41278 uncharacterized LOC400046 2.76305
FIS1 fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae) 2.64759
LLPH LLP homolog, long-term synaptic facilitation (Aplysia) 2.64759
MDM1 Mdm1 nuclear protein homolog (mouse) 2.64759
CLDN15 claudin 15 2.64759
IRAK3 interleukin-1 receptor-associated kinase 3 2.64759
RPSAP52 ribosomal protein SA pseudogene 52 2.64759
MOGAT3 monoacylglycerol O-acyltransferase 3 2.64759
NAT16 N-acetyltransferase 16 (GCN5-related, putative) 2.64759
MIR4653 microRNA 4653 2.64759
ZNHIT1 zinc finger, HIT-type containing 1 2.64759
TMBIM4 transmembrane BAX inhibitor motif containing 4 2.64759
RASA4 RAS p21 protein activator 4 2.64759
DYRK2 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 2.64759
HELB helicase (DNA) B 2.64759
MSRB3 methionine sulfoxide reductase B3 2.64759
AP1S1 adaptor-related protein complex 1, sigma 1 subunit 2.64759
PLOD3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 2.64759
VGF VGF nerve growth factor inducible 2.64759
SLC13A1 solute carrier family 13 (sodium/sulfate symporter), member 1 2.59653
TRIM56 tripartite motif containing 56 2.59653
ASB15 ankyrin repeat and SOCS box containing 15 2.59653
NDUFA5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 2.59653
SPAM1 sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding) 2.59653
LMOD2 leiomodin 2 (cardiac) 2.59653
HYAL4 hyaluronoglucosaminidase 4 2.59653
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 2.59653
WASL Wiskott-Aldrich syndrome-like 2.59653
TMEM229A transmembrane protein 229A 2.59653
HMGA2 high mobility group AT-hook 2 2.59653
GRIP1 glutamate receptor interacting protein 1 2.59653
TAS2R16 taste receptor, type 2, member 16 2.59653
IQUB IQ motif and ubiquitin domain containing 2.59653
HYALP1 hyaluronoglucosaminidase pseudogene 1 2.59653
EPO erythropoietin 2.49065
EPHB4 EPH receptor B4 2.49065
MIR93 microRNA 93 2.49065
GATS GATS, stromal antigen 3 opposite strand 2.49065
LRCH4 leucine-rich repeats and calponin homology (CH) domain containing 4 2.49065
DPY19L2P2 DPY19L2 pseudogene 2 2.49065
MCM7 minichromosome maintenance complex component 7 2.49065
RNF148 ring finger protein 148 2.49065
AP4M1 adaptor-related protein complex 4, mu 1 subunit 2.49065
SAP25 Sin3A-associated protein, 25kDa 2.49065
AGFG2 ArfGAP with FG repeats 2 2.49065
PPP1R35 protein phosphatase 1, regulatory subunit 35 2.49065
FEZF1-AS1 FEZF1 antisense RNA 1 2.49065
PUS7 pseudouridylate synthase 7 (putative) 2.49065
GNB2 guanine nucleotide binding protein (G protein), beta polypeptide 2 2.49065
TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 2.49065
DLD dihydrolipoamide dehydrogenase 2.49065
MIR106B microRNA 106b 2.49065
SYPL1 synaptophysin-like 1 2.49065
ZNF3 zinc finger protein 3 2.49065
ZSCAN21 zinc finger and SCAN domain containing 21 2.49065
PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 2.49065
PMS2P1 postmeiotic segregation increased 2 pseudogene 1 2.49065
RAP1B RAP1B, member of RAS oncogene family 2.49065
TFR2 transferrin receptor 2 2.49065
MEPCE methylphosphate capping enzyme 2.49065
CNPY4 canopy FGF signaling regulator 4 2.49065
TSC22D4 TSC22 domain family, member 4 2.49065
LAMTOR4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 2.49065
CAND1 cullin-associated and neddylation-dissociated 1 2.49065
SNORA70G small nucleolar RNA, H/ACA box 70G 2.49065
FBXL13 F-box and leucine-rich repeat protein 13 2.49065
RNF133 ring finger protein 133 2.49065
FEZF1 FEZ family zinc finger 1 2.49065
STAG3 stromal antigen 3 2.49065
TRIP6 thyroid hormone receptor interactor 6 2.49065
GAL3ST4 galactose-3-O-sulfotransferase 4 2.49065
FBXO24 F-box protein 24 2.49065
LAMB4 laminin, beta 4 2.49065
PCOLCE-AS1 PCOLCE antisense RNA 1 2.49065
LAMB1 laminin, beta 1 2.49065
MIR4658 microRNA 4658 2.49065
GIGYF1 GRB10 interacting GYF protein 1 2.49065
ACHE acetylcholinesterase (Yt blood group) 2.49065
C7ORF61 chromosome 7 open reading frame 61 2.49065
NAMPT nicotinamide phosphoribosyltransferase 2.49065
MOSPD3 motile sperm domain containing 3 2.49065
PVRIG poliovirus receptor related immunoglobulin domain containing 2.49065
PCOLCE procollagen C-endopeptidase enhancer 2.49065
NRCAM neuronal cell adhesion molecule 2.49065
ZAN zonadhesin (gene/pseudogene) 2.49065
PILRB paired immunoglobin-like type 2 receptor beta 2.49065
POP7 processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae) 2.49065
C7ORF43 chromosome 7 open reading frame 43 2.49065
PNPLA8 patatin-like phospholipase domain containing 8 2.49065
MUC3B mucin 3B, cell surface associated 2.49065
EFCAB10 EF-hand calcium binding domain 10 2.49065
GPC2 glypican 2 2.49065
MUC3A mucin 3A, cell surface associated 2.49065
ARMC10 armadillo repeat containing 10 2.49065
UFSP1 UFM1-specific peptidase 1 (non-functional) 2.49065
SLC12A9 solute carrier family 12, member 9 2.49065
PILRA paired immunoglobin-like type 2 receptor alpha 2.49065
COPS6 COP9 signalosome subunit 6 2.49065
SPDYE3 speedy/RINGO cell cycle regulator family member E3 2.49065
LRRC17 leucine rich repeat containing 17 2.49065
LHFPL3-AS1 LHFPL3 antisense RNA 1 2.49065
CADPS2 Ca++-dependent secretion activator 2 2.49065
SRPK2 SRSF protein kinase 2 2.49065
THAP5 THAP domain containing 5 2.49065
NYAP1 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1 2.49065
LHFPL3-AS2 LHFPL3 antisense RNA 2 2.49065
RINT1 RAD50 interactor 1 2.49065
ATXN7L1 ataxin 7-like 1 2.49065
MBLAC1 metallo-beta-lactamase domain containing 1 2.49065
ZASP ZO-2 associated speckle protein 2.49065
CDHR3 cadherin-related family member 3 2.49065
SRRT serrate, RNA effector molecule 2.49065
ZCWPW1 zinc finger, CW type with PWWP domain 1 2.49065
FAM185A family with sequence similarity 185, member A 2.49065
LOC100507250 uncharacterized LOC100507250 2.49065
ACTL6B actin-like 6B 2.49065
GPR37 G protein-coupled receptor 37 (endothelin receptor type B-like) 2.49065
MUC17 mucin 17, cell surface associated 2.49065
MUC12 mucin 12, cell surface associated 2.49065
MIR25 microRNA 25 2.49065
MIR4258 microRNA 4258 2.44392
DCST1 DC-STAMP domain containing 1 2.44392
WNT16 wingless-type MMTV integration site family, member 16 2.44392
SLC26A3 solute carrier family 26 (anion exchanger), member 3 2.44392
SLC26A4-AS1 SLC26A4 antisense RNA 1 2.44392
DCST2 DC-STAMP domain containing 2 2.44392
FLAD1 flavin adenine dinucleotide synthetase 1 2.44392
LOC100505666 uncharacterized LOC100505666 2.44392
PSMC2 proteasome (prosome, macropain) 26S subunit, ATPase, 2 2.44392
FAM3C family with sequence similarity 3, member C 2.44392
SLC26A4 solute carrier family 26 (anion exchanger), member 4 2.44392
SLC26A5 solute carrier family 26 (anion exchanger), member 5 2.44392
KMT2E lysine (K)-specific methyltransferase 2E 2.44392
RPL19P12 ribosomal protein L19 pseudogene 12 2.44392
GPR22 G protein-coupled receptor 22 2.44392
DNAJC2 DnaJ (Hsp40) homolog, subfamily C, member 2 2.44392
PMPCB peptidase (mitochondrial processing) beta 2.44392
SHC1 SHC (Src homology 2 domain containing) transforming protein 1 2.44392
BCAP29 B-cell receptor-associated protein 29 2.44392
CPSF6 cleavage and polyadenylation specific factor 6, 68kDa 2.44392
DNAJB9 DnaJ (Hsp40) homolog, subfamily B, member 9 2.44392
MIR1279 microRNA 1279 2.44392
PMVK phosphomevalonate kinase 2.44392
COG5 component of oligomeric golgi complex 5 2.44392
ORC5 origin recognition complex, subunit 5 2.44392
AZGP1 alpha-2-glycoprotein 1, zinc-binding 2.44392
AZGP1P1 alpha-2-glycoprotein 1, zinc-binding pseudogene 1 2.44392
ZBTB7B zinc finger and BTB domain containing 7B 2.44392
LENEP lens epithelial protein 2.44392
PBXIP1 pre-B-cell leukemia homeobox interacting protein 1 2.44392
PYGO2 pygopus family PHD finger 2 2.44392
HBP1 HMG-box transcription factor 1 2.44392
CKS1B CDC28 protein kinase regulatory subunit 1B 2.44392
NUP107 nucleoporin 107kDa 2.44392
RELN reelin 2.44392
NAPEPLD N-acyl phosphatidylethanolamine phospholipase D 2.44392
DUS4L dihydrouridine synthase 4-like (S. cerevisiae) 2.44392
CBLL1 Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase 2.44392
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2.44392
LYZ lysozyme 2.41451
ZKSCAN5 zinc finger with KRAB and SCAN domains 5 2.41451
CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 2.41451
GNAT3 guanine nucleotide binding protein, alpha transducing 3 2.41451
CYP3A7 cytochrome P450, family 3, subfamily A, polypeptide 7 2.41451
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 2.41451
YEATS4 YEATS domain containing 4 2.41451
CCDC71L coiled-coil domain containing 71-like 2.41451
TRIM4 tripartite motif containing 4 2.41451
FAM200A family with sequence similarity 200, member A 2.41451
ZSCAN25 zinc finger and SCAN domain containing 25 2.41451
C7ORF66 chromosome 7 open reading frame 66 2.41451
CPSF4 cleavage and polyadenylation specific factor 4, 30kDa 2.41451
ATP5J2-PTCD1 ATP5J2-PTCD1 readthrough 2.41451
ZNF655 zinc finger protein 655 2.41451
LHFPL3 lipoma HMGIC fusion partner-like 3 2.41451
PTCD1 pentatricopeptide repeat domain 1 2.41451
BUD31 BUD31 homolog (S. cerevisiae) 2.41451
ZNF789 zinc finger protein 789 2.41451
ATP5J2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 2.41451
OR2AE1 olfactory receptor, family 2, subfamily AE, member 1 2.41451
PPP1R3A protein phosphatase 1, regulatory subunit 3A 2.41451
GJC3 gap junction protein, gamma 3, 30.2kDa 2.41451
CYP3A43 cytochrome P450, family 3, subfamily A, polypeptide 43 2.41451
PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta 2.41451
CYP3A7-CYP3A51P CYP3A7-CYP3A51P readthrough 2.41451
ZNF394 zinc finger protein 394 2.41451
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 2.41451
MIR3666 microRNA 3666 2.39327
PDAP1 PDGFA associated protein 1 2.39327
C7ORF60 chromosome 7 open reading frame 60 2.39327
STEAP1 six transmembrane epithelial antigen of the prostate 1 2.39327
TSPAN12 tetraspanin 12 2.39327
TRRAP transformation/transcription domain-associated protein 2.39327
FRS2 fibroblast growth factor receptor substrate 2 2.39327
STEAP2 STEAP family member 2, metalloreductase 2.39327
GPR85 G protein-coupled receptor 85 2.39327
NPTX2 neuronal pentraxin II 2.39327
MIR3609 microRNA 3609 2.39327
DPY19L2P4 DPY19L2 pseudogene 4 2.39327
LSMEM1 leucine-rich single-pass membrane protein 1 2.39327
MYH16 myosin, heavy chain 16 pseudogene 2.39327
TMEM168 transmembrane protein 168 2.39327
SLC35E3 solute carrier family 35, member E3 2.39327
C7ORF62 chromosome 7 open reading frame 62 2.39327
CPED1 cadherin-like and PC-esterase domain containing 1 2.39327
LOC101409256 cell division cycle 42 pseudogene 2.39327
EIF3IP1 eukaryotic translation initiation factor 3, subunit I pseudogene 1 2.39327
ZNF804B zinc finger protein 804B 2.39327
GTPBP10 GTP-binding protein 10 (putative) 2.39327
ING3 inhibitor of growth family, member 3 2.39327
ARPC1A actin related protein 2/3 complex, subunit 1A, 41kDa 2.39327
TMEM130 transmembrane protein 130 2.39327
CLDN12 claudin 12 2.39327
ARPC1B actin related protein 2/3 complex, subunit 1B, 41kDa 2.39327
MDFIC MyoD family inhibitor domain containing 2.36889
ADAR adenosine deaminase, RNA-specific 2.36889
BRI3 brain protein I3 2.36889
BAIAP2L1 BAI1-associated protein 2-like 1 2.36889
IFRD1 interferon-related developmental regulator 1 2.36889
ZNF277 zinc finger protein 277 2.36889
KCNN3 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 3 2.36889
CHRNB2 cholinergic receptor, nicotinic, beta 2 (neuronal) 2.36889
FOXP2 forkhead box P2 2.36889
SHE Src homology 2 domain containing E 2.36889
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 2.36889
UBE2Q1 ubiquitin-conjugating enzyme E2Q family member 1 2.36889
KPNA7 karyopherin alpha 7 (importin alpha 8) 2.36889
CRCT1 cysteine-rich C-terminal 1 2.35236
LCE5A late cornified envelope 5A 2.35236
CRNN cornulin 2.35236
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 2.35236
KCND2 potassium channel, voltage gated Shal related subfamily D, member 2 2.35236
MGC72080 MGC72080 pseudogene 2.35236
SRI sorcin 2.35236
STEAP4 STEAP family member 4 2.35236
LOC100130075 SUZ RNA binding domain containing 1 pseudogene 2.35236
ASNS asparagine synthetase (glutamine-hydrolyzing) 2.35236
CPM carboxypeptidase M 2.35236
IL6R interleukin 6 receptor 2.35236
HAX1 HCLS1 associated protein X-1 2.3178
LCE1F late cornified envelope 1F 2.3178
FLG filaggrin 2.3178
OCM2 oncomodulin 2 2.3178
AQP10 aquaporin 10 2.3178
LCE3E late cornified envelope 3E 2.3178
LCE3A late cornified envelope 3A 2.3178
ATP8B2 ATPase, aminophospholipid transporter, class I, type 8B, member 2 2.3178
CDK14 cyclin-dependent kinase 14 2.3178
FLG2 filaggrin family member 2 2.3178
RPTN repetin 2.30944
LCE1C late cornified envelope 1C 2.30944
SPRR1A small proline-rich protein 1A 2.30944
LCE1A late cornified envelope 1A 2.30944
SPRR1B small proline-rich protein 1B 2.30944
KPRP keratinocyte proline-rich protein 2.30944
LCE1B late cornified envelope 1B 2.30944
SAMD9 sterile alpha motif domain containing 9 2.30944
AKAP9 A kinase (PRKA) anchor protein 9 2.30944
LCE4A late cornified envelope 4A 2.30944
SPRR3 small proline-rich protein 3 2.30944
TCHH trichohyalin 2.30944
TCHHL1 trichohyalin-like 1 2.30944
MIR190B microRNA 190b 2.30944
SMCP sperm mitochondria-associated cysteine-rich protein 2.30944
IVL involucrin 2.30944
SPRR2D small proline-rich protein 2D 2.30944
C1ORF68 chromosome 1 open reading frame 68 2.30944
C1ORF189 chromosome 1 open reading frame 189 2.30944
LCE3D late cornified envelope 3D 2.30944
UBAP2L ubiquitin associated protein 2-like 2.30944
ADAM22 ADAM metallopeptidase domain 22 2.30944
C1ORF43 chromosome 1 open reading frame 43 2.30944
LCE2C late cornified envelope 2C 2.30944
SAMD9L sterile alpha motif domain containing 9-like 2.30944
FZD1 frizzled class receptor 1 2.30944
LCE2B late cornified envelope 2B 2.30944
LCE2A late cornified envelope 2A 2.30944
LCE2D late cornified envelope 2D 2.30944
TPM3 tropomyosin 3 2.30944
HRNR hornerin 2.283
LELP1 late cornified envelope-like proline-rich 1 2.283
PRR9 proline rich 9 2.283
LOC100506136 uncharacterized LOC100506136 2.283
CYP51A1 cytochrome P450, family 51, subfamily A, polypeptide 1 2.283
NAA38 N(alpha)-acetyltransferase 38, NatC auxiliary subunit 2.283
INTS3 integrator complex subunit 3 2.283
ANKIB1 ankyrin repeat and IBR domain containing 1 2.283
MGC16142 uncharacterized protein MGC16142 2.283
SHFM1 split hand/foot malformation (ectrodactyly) type 1 2.283
RAB13 RAB13, member RAS oncogene family 2.283
KRIT1 KRIT1, ankyrin repeat containing 2.283
C7ORF76 chromosome 7 open reading frame 76 2.283
RPS27 ribosomal protein S27 2.283
SPRR2E small proline-rich protein 2E 2.283
GATAD2B GATA zinc finger domain containing 2B 2.283
PEX1 peroxisomal biogenesis factor 1 2.283
ANKRD7 ankyrin repeat domain 7 2.283
LOR loricrin 2.283
CRTC2 CREB regulated transcription coactivator 2 2.283
SPRR2B small proline-rich protein 2B 2.283
SPRR2C small proline-rich protein 2C (pseudogene) 2.283
LRRD1 leucine-rich repeats and death domain containing 1 2.283
SPRR2F small proline-rich protein 2F 2.283
GATAD1 GATA zinc finger domain containing 1 2.283
JTB jumping translocation breakpoint 2.283
SLC27A3 solute carrier family 27 (fatty acid transporter), member 3 2.283
SPRR2G small proline-rich protein 2G 2.283
ERVW-1 endogenous retrovirus group W, member 1 2.283
SPRR4 small proline-rich protein 4 2.283
TFPI2 tissue factor pathway inhibitor 2 2.283
GNG11 guanine nucleotide binding protein (G protein), gamma 11 2.283
HEPACAM2 HEPACAM family member 2 2.283
NUP210L nucleoporin 210kDa-like 2.283
SNORA67 small nucleolar RNA, H/ACA box 67 2.283
BET1 Bet1 golgi vesicular membrane trafficking protein 2.283
CREB3L4 cAMP responsive element binding protein 3-like 4 2.283
SLC39A1 solute carrier family 39 (zinc transporter), member 1 2.283
DENND4B DENN/MADD domain containing 4B 2.283
RBM48 RNA binding motif protein 48 2.283
S100A6 S100 calcium binding protein A6 2.26395
S100A4 S100 calcium binding protein A4 2.26395
PON1 paraoxonase 1 2.26395
SPRR2A small proline-rich protein 2A 2.26395
S100A5 S100 calcium binding protein A5 2.26395
SNORA58 small nucleolar RNA, H/ACA box 58 2.26395
S100A8 S100 calcium binding protein A8 2.26395
S100A9 S100 calcium binding protein A9 2.26395
MIR4652 microRNA 4652 2.26395
COL1A2 collagen, type I, alpha 2 2.26395
DLX6-AS1 DLX6 antisense RNA 1 2.26395
PEG10 paternally expressed 10 2.26395
S100A1 S100 calcium binding protein A1 2.26395
FAM133B family with sequence similarity 133, member B 2.26395
CASD1 CAS1 domain containing 1 2.26395
SLC25A13 solute carrier family 25 (aspartate/glutamate carrier), member 13 2.26395
S100A3 S100 calcium binding protein A3 2.26395
PDK4 pyruvate dehydrogenase kinase, isozyme 4 2.26395
S100A7L2 S100 calcium binding protein A7-like 2 2.26395
SDHAF3 succinate dehydrogenase complex assembly factor 3 2.26395
S100A2 S100 calcium binding protein A2 2.26395
CHTOP chromatin target of PRMT1 2.26395
PGLYRP4 peptidoglycan recognition protein 4 2.26395
SNAPIN SNAP-associated protein 2.26395
S100A14 S100 calcium binding protein A14 2.26395
S100A12 S100 calcium binding protein A12 2.26395
PGLYRP3 peptidoglycan recognition protein 3 2.26395
PON3 paraoxonase 3 2.26395
S100A13 S100 calcium binding protein A13 2.26395
ILF2 interleukin enhancer binding factor 2 2.26395
TAC1 tachykinin, precursor 1 2.26395
ASB4 ankyrin repeat and SOCS box containing 4 2.26395
S100A7A S100 calcium binding protein A7A 2.26395
CCDC132 coiled-coil domain containing 132 2.26395
TFEC transcription factor EC 2.26395
SGCE sarcoglycan, epsilon 2.26395
PON2 paraoxonase 2 2.26395
S100A16 S100 calcium binding protein A16 2.26395
GNGT1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 2.26395
DYNC1I1 dynein, cytoplasmic 1, intermediate chain 1 2.26395
DLX6 distal-less homeobox 6 2.26395
S100A7 S100 calcium binding protein A7 2.26395
NPR1 natriuretic peptide receptor 1 2.26395
TES testin LIM domain protein 2.26395
DLX5 distal-less homeobox 5 2.26395
CTTNBP2 cortactin binding protein 2 2.25904
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 2.25904
CDK6 cyclin-dependent kinase 6 2.25904
MIR653 microRNA 653 2.25904
WNT2 wingless-type MMTV integration site family member 2 2.25904
CAV2 caveolin 2 2.25904
MIR489 microRNA 489 2.25904
ASZ1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 2.25904
ST7-OT3 ST7 overlapping transcript 3 2.25904
CALCR calcitonin receptor 2.25904
CAV1 caveolin 1, caveolae protein, 22kDa 2.24845
PPP1R9A protein phosphatase 1, regulatory subunit 9A 2.24845
ST7-AS2 ST7 antisense RNA 2 2.24845
ST7-AS1 ST7 antisense RNA 1 2.24139
ST7-OT4 ST7 overlapping transcript 4 2.24139
ST7 suppression of tumorigenicity 7 2.24139
MET MET proto-oncogene, receptor tyrosine kinase 2.2355
CAPZA2 capping protein (actin filament) muscle Z-line, alpha 2 2.2355
SRD5A1 steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) 2.22123
NSUN2 NOP2/Sun RNA methyltransferase family, member 2 2.22123
UBE2QL1 ubiquitin-conjugating enzyme E2Q family-like 1 2.21727
MED10 mediator complex subunit 10 2.21258
MIR4454 microRNA 4454 2.21258
FLJ33360 FLJ33360 protein 2.21258
IRX1 iroquois homeobox 1 2.21096
C5ORF49 chromosome 5 open reading frame 49 2.21096
ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif, 16 2.21096
CCT5 chaperonin containing TCP1, subunit 5 (epsilon) 2.20309
CMBL carboxymethylenebutenolidase homolog (Pseudomonas) 2.20309
FAM173B family with sequence similarity 173, member B 2.20309
ANKRD33B ankyrin repeat domain 33B 2.20309
MARCH6 membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 2.20309
ROPN1L-AS1 ROPN1L antisense RNA 1 2.20309
FASTKD3 FAST kinase domains 3 2.20309
MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2.20309
ROPN1L rhophilin associated tail protein 1-like 2.20309
DAP death-associated protein 2.20309
MIR4636 microRNA 4636 2.20053
MIR4458 microRNA 4458 2.20053
LOC729506 uncharacterized LOC729506 2.20053
SNORD123 small nucleolar RNA, C/D box 123 2.19863
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 2.19863
TAS2R1 taste receptor, type 2, member 1 2.19863
ANKH ANKH inorganic pyrophosphate transport regulator 2.18778
MIR4637 microRNA 4637 2.18778
DNAH5 dynein, axonemal, heavy chain 5 2.18778
FAM105A family with sequence similarity 105, member A 2.18778
LOC100130744 uncharacterized LOC100130744 2.18778
TRIO trio Rho guanine nucleotide exchange factor 2.18124
FBXL7 F-box and leucine-rich repeat protein 7 2.17694
SNORA25 small nucleolar RNA, H/ACA box 25 2.15953
FAM156B family with sequence similarity 156, member B 2.14731
XAGE3 X antigen family, member 3 2.14731
H2AFX H2A histone family, member X 2.14116
C2CD2L C2CD2-like 2.14116
DPAGT1 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 2.14116
FAM156A family with sequence similarity 156, member A 2.13697
GPR173 G protein-coupled receptor 173 2.1368
TSPYL2 TSPY-like 2 2.1368
FOXR1 forkhead box R1 2.12703
SNORA14B small nucleolar RNA, H/ACA box 14B 2.12703
BCL9L B-cell CLL/lymphoma 9-like 2.12703
MIR4492 microRNA 4492 2.12703
TARBP1 TAR (HIV-1) RNA binding protein 1 2.12703
RPS25 ribosomal protein S25 2.12703
DDX6 DEAD (Asp-Glu-Ala-Asp) box helicase 6 2.12703
HYOU1 hypoxia up-regulated 1 2.12703
MIR3656 microRNA 3656 2.12703
VPS11 vacuolar protein sorting 11 homolog (S. cerevisiae) 2.12703
CCDC84 coiled-coil domain containing 84 2.12703
CXCR5 chemokine (C-X-C motif) receptor 5 2.12703
HMBS hydroxymethylbilane synthase 2.12703
TRAPPC4 trafficking protein particle complex 4 2.12703
UPK2 uroplakin 2 2.12703
RBM34 RNA binding motif protein 34 2.12703
MIR4753 microRNA 4753 2.12703
SLC37A4 solute carrier family 37 (glucose-6-phosphate transporter), member 4 2.12703
RPL23AP64 ribosomal protein L23a pseudogene 64 2.12703
TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) 2.12703
KBTBD3 kelch repeat and BTB (POZ) domain containing 3 2.12225
MIR4285 microRNA 4285 2.12225
MYL10 myosin, light chain 10, regulatory 2.12225
SPDYE6 speedy/RINGO cell cycle regulator family member E6 2.12225
ARCN1 archain 1 2.12225
AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2.12225
CASP4 caspase 4, apoptosis-related cysteine peptidase 2.12225
SH2B2 SH2B adaptor protein 2 2.12225
ARID4B AT rich interactive domain 4B (RBP1-like) 2.12225
TREH trehalase (brush-border membrane glycoprotein) 2.12225
PHLDB1 pleckstrin homology-like domain, family B, member 1 2.12225
IFT46 intraflagellar transport 46 2.12225
CUX1 cut-like homeobox 1 2.11167
IRF2BP2 interferon regulatory factor 2 binding protein 2 2.10992
MSANTD4 Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 2.10992
LOC643733 caspase 4, apoptosis-related cysteine peptidase pseudogene 2.10992
CASP5 caspase 5, apoptosis-related cysteine peptidase 2.10992
CASP12 caspase 12 (gene/pseudogene) 2.10992
LINC00184 long intergenic non-protein coding RNA 184 2.10992
CARD18 caspase recruitment domain family, member 18 2.10177
CUL5 cullin 5 2.10177
CARD17 caspase recruitment domain family, member 17 2.10177
ACAT1 acetyl-CoA acetyltransferase 1 2.10177
COL26A1 collagen, type XXVI, alpha 1 2.10038
LOC643923 uncharacterized LOC643923 2.10038
CASP1 caspase 1, apoptosis-related cysteine peptidase 2.10038
SLN sarcolipin 2.10038
GUCY1A2 guanylate cyclase 1, soluble, alpha 2 2.10038
SLC35F2 solute carrier family 35, member F2 2.10038
ALKBH8 alkB, alkylation repair homolog 8 (E. coli) 2.10038
ELMOD1 ELMO/CED-12 domain containing 1 2.10038
CWF19L2 CWF19-like 2, cell cycle control (S. pombe) 2.10038
CARD16 caspase recruitment domain family, member 16 2.10038
GRIA4 glutamate receptor, ionotropic, AMPA 4 2.10038
RAB39A RAB39A, member RAS oncogene family 2.10038
NPAT nuclear protein, ataxia-telangiectasia locus 2.09529
C11ORF65 chromosome 11 open reading frame 65 2.09529
ATM ATM serine/threonine kinase 2.09529
EXPH5 exophilin 5 2.09431
AASS aminoadipate-semialdehyde synthase 2.09431
KDELC2 KDEL (Lys-Asp-Glu-Leu) containing 2 2.09431
LRRN3 leucine rich repeat neuronal 3 2.09294
DDX10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 2.09073
DDI1 DNA-damage inducible 1 homolog 1 (S. cerevisiae) 2.09073
PDGFD platelet derived growth factor D 2.08712
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 2.08423
DOCK4 dedicator of cytokinesis 4 2.08021
BHLHA15 basic helix-loop-helix family, member a15 2.08021
TDRD10 tudor domain containing 10 2.08021
TECPR1 tectonin beta-propeller repeat containing 1 2.08021
LMTK2 lemur tyrosine kinase 2 2.08021
LCE1E late cornified envelope 1E 2.07574
LCE1D late cornified envelope 1D 2.0752
MIR591 microRNA 591 2.06626
MIR4278 microRNA 4278 2.05661
PAPD7 PAP associated domain containing 7 2.05661
LOC442132 golgin A6 family-like 1 pseudogene 2.05559
ADCY2 adenylate cyclase 2 (brain) 2.05422
LOC285692 uncharacterized LOC285692 2.0522
CTNND2 catenin (cadherin-associated protein), delta 2 2.05129

low copy number

Symbol Name Standardized Value
PARP11 poly (ADP-ribose) polymerase family, member 11 -3.39516
PRMT8 protein arginine methyltransferase 8 -3.39516
LRRC1 leucine rich repeat containing 1 -3.2703
MLIP-IT1 MLIP intronic transcript 1 -3.2703
KIAA2026 KIAA2026 -3.18666
MLANA melan-A -3.18666
ERMP1 endoplasmic reticulum metallopeptidase 1 -3.18666
MIR4665 microRNA 4665 -3.18389
RANBP6 RAN binding protein 6 -3.18389
PLGRKT plasminogen receptor, C-terminal lysine transmembrane protein -3.18389
PDCD1LG2 programmed cell death 1 ligand 2 -3.18157
CD274 CD274 molecule -3.18157
RLN2 relaxin 2 -3.17926
RLN1 relaxin 1 -3.17926
AK3 adenylate kinase 3 -3.17926
RCL1 RNA terminal phosphate cyclase-like 1 -3.17926
SPATA6L spermatogenesis associated 6-like -3.17926
UHRF2 ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase -3.17926
IL33 interleukin 33 -3.17926
INSL4 insulin-like 4 (placenta) -3.17926
SLC1A1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 -3.17926
PPAPDC2 phosphatidic acid phosphatase type 2 domain containing 2 -3.17926
CDC37L1 cell division cycle 37-like 1 -3.17926
TPD52L3 tumor protein D52-like 3 -3.17926
INSL6 insulin-like 6 -3.17697
GLDC glycine dehydrogenase (decarboxylating) -3.17697
MIR101-2 microRNA 101-2 -3.17697
JAK2 Janus kinase 2 -3.17697
CSTF2T cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant -3.15836
DPP6 dipeptidyl-peptidase 6 -3.15836
CD69 CD69 molecule -3.15836
MLIP muscular LMNA-interacting protein -3.12964
KDM4C lysine (K)-specific demethylase 4C -3.08391
PRKG1 protein kinase, cGMP-dependent, type I -3.08009
MIR605 microRNA 605 -3.0433
EGOT eosinophil granule ontogeny transcript (non-protein coding) -3.03082
FOXD4 forkhead box D4 -3.01237
KCNV2 potassium channel, voltage gated modifier subfamily V, member 2 -3.01189
VLDLR very low density lipoprotein receptor -3.01189
GLIS3 GLIS family zinc finger 3 -3.01189
KIAA0020 KIAA0020 -3.01189
GLIS3-AS1 GLIS3 antisense RNA 1 -3.01189
CBWD1 COBW domain containing 1 -2.98642
DMRT2 doublesex and mab-3 related transcription factor 2 -2.98526
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 -2.98526
DMRT3 doublesex and mab-3 related transcription factor 3 -2.95896
DOCK8 dedicator of cytokinesis 8 -2.92847
C9ORF66 chromosome 9 open reading frame 66 -2.92821
DMRT1 doublesex and mab-3 related transcription factor 1 -2.92821
RFX3 regulatory factor X, 3 (influences HLA class II expression) -2.8962
KANK1 KN motif and ankyrin repeat domains 1 -2.87971
SNORD27 small nucleolar RNA, C/D box 27 -2.86885
OR52N5 olfactory receptor, family 52, subfamily N, member 5 -2.84224
FFAR3 free fatty acid receptor 3 -2.76158
OR52N1 olfactory receptor, family 52, subfamily N, member 1 -2.73524