NCI-H1836 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: carcinoma; classic small cell lung cancer (Cell Line Ontology, CLO_0008022)
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Genes

49 genes with high or low copy number in NCI-H1836 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
CDCA8 cell division cycle associated 8 2.93899
C1ORF109 chromosome 1 open reading frame 109 2.93899
EPHA10 EPH receptor A10 2.93899
KCNQ4 potassium channel, voltage gated KQT-like subfamily Q, member 4 2.39327
SLFNL1 schlafen-like 1 2.39327
CTPS1 CTP synthase 1 2.39327
KIAA0754 KIAA0754 2.39327
SLFNL1-AS1 SLFNL1 antisense RNA 1 2.39327
TPX2 TPX2, microtubule-associated 2.39327
NFYC nuclear transcription factor Y, gamma 2.39327
CITED4 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 2.39327
SCMH1 sex comb on midleg homolog 1 (Drosophila) 2.39327
DEFB124 defensin, beta 124 2.35236
DEFB121 defensin, beta 121 2.35236
MACF1 microtubule-actin crosslinking factor 1 2.35236
COX4I2 cytochrome c oxidase subunit IV isoform 2 (lung) 2.35236
HM13-AS1 HM13 antisense RNA 1 2.35236
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein 2.35236
MIR3193 microRNA 3193 2.35236
SNORA55 small nucleolar RNA, H/ACA box 55 2.35236
DEFB119 defensin, beta 119 2.35236
REM1 RAS (RAD and GEM)-like GTP-binding 1 2.35236
PABPC4 poly(A) binding protein, cytoplasmic 4 (inducible form) 2.35236
HM13 histocompatibility (minor) 13 2.35236
LINC00028 long intergenic non-protein coding RNA 28 2.35236
DEFB116 defensin, beta 116 2.35236
DEFB115 defensin, beta 115 2.35236
DEFB118 defensin, beta 118 2.35236
BCL2L1 BCL2-like 1 2.35236
DEFB123 defensin, beta 123 2.35236
DEFB122 defensin, beta 122 (pseudogene) 2.35236
PPIEL peptidylprolyl isomerase E-like pseudogene 2.35236
HEYL hes-related family bHLH transcription factor with YRPW motif-like 2.3178
NT5C1A 5'-nucleotidase, cytosolic IA 2.30944
PPT1 palmitoyl-protein thioesterase 1 2.30944
BMP8A bone morphogenetic protein 8a 2.30944
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) 2.283
HPCAL4 hippocalcin like 4 2.283
MFSD2A major facilitator superfamily domain containing 2A 2.25904
PPIE peptidylprolyl isomerase E (cyclophilin E) 2.24845
OXCT2 3-oxoacid CoA transferase 2 2.24845
BMP8B bone morphogenetic protein 8b 2.24845
TRIT1 tRNA isopentenyltransferase 1 2.24139

low copy number

Symbol Name Standardized Value
CSNK1A1 casein kinase 1, alpha 1 -3.2703
TP73 tumor protein p73 -2.99615
REREP3 arginine-glutamic acid dipeptide (RE) repeats pseudogene 3 -2.95921
LPAR6 lysophosphatidic acid receptor 6 -2.85279
FAM86DP family with sequence similarity 86, member D, pseudogene -2.84592
RB1 retinoblastoma 1 -2.83092