LCLC-103H Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: carcinoma, large cell (Cell Line Ontology, CLO_0007282)
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Genes

149 genes with high or low copy number in LCLC-103H relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
C5ORF49 chromosome 5 open reading frame 49 2.21096
CCT5 chaperonin containing TCP1, subunit 5 (epsilon) 2.20309
CMBL carboxymethylenebutenolidase homolog (Pseudomonas) 2.20309
ANKRD33B ankyrin repeat domain 33B 2.20309
FAM173B family with sequence similarity 173, member B 2.20309
FASTKD3 FAST kinase domains 3 2.20309
ROPN1L-AS1 ROPN1L antisense RNA 1 2.20309
ROPN1L rhophilin associated tail protein 1-like 2.20309
DAP death-associated protein 2.20309
MARCH6 membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 2.20309
MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2.20309
C5ORF22 chromosome 5 open reading frame 22 2.20053
MIR4458 microRNA 4458 2.20053
DROSHA drosha, ribonuclease type III 2.20053
TARS threonyl-tRNA synthetase 2.20053
LOC285696 uncharacterized LOC285696 2.20053
MIR4636 microRNA 4636 2.20053
LOC729506 uncharacterized LOC729506 2.20053
LOC340113 uncharacterized LOC340113 2.19863
SNORD123 small nucleolar RNA, C/D box 123 2.19863
SUB1 SUB1 homolog (S. cerevisiae) 2.19863
LOC100506548 uncharacterized LOC100506548 2.19863
PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit 2.19863
TTC33 tetratricopeptide repeat domain 33 2.19863
TAS2R1 taste receptor, type 2, member 1 2.19863
RXFP3 relaxin/insulin-like family peptide receptor 3 2.19863
CARD6 caspase recruitment domain family, member 6 2.19863
ZNF622 zinc finger protein 622 2.19863
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 2.19863
MARCH11 membrane-associated ring finger (C3HC4) 11 2.19863
FAM134B family with sequence similarity 134, member B 2.19863
SNORD72 small nucleolar RNA, C/D box 72 2.19863
NPR3 natriuretic peptide receptor 3 2.19863
RPL37 ribosomal protein L37 2.19863
BASP1 brain abundant, membrane attached signal protein 1 2.19863
LOC401177 uncharacterized LOC401177 2.19301
AMACR alpha-methylacyl-CoA racemase 2.19301
PTGER4 prostaglandin E receptor 4 (subtype EP4) 2.19301
PLCXD3 phosphatidylinositol-specific phospholipase C, X domain containing 3 2.19301
C1QTNF3 C1q and tumor necrosis factor related protein 3 2.19301
SLC45A2 solute carrier family 45, member 2 2.19301
MYO10 myosin X 2.19301
MROH2B maestro heat-like repeat family member 2B 2.19301
C7 complement component 7 2.19301
ANKH ANKH inorganic pyrophosphate transport regulator 2.18778
C5ORF42 chromosome 5 open reading frame 42 2.18778
FAM105A family with sequence similarity 105, member A 2.18778
GDNF glial cell derived neurotrophic factor 2.18778
EGFLAM-AS2 EGFLAM antisense RNA 2 2.18778
IL7R interleukin 7 receptor 2.18778
NUP155 nucleoporin 155kDa 2.18778
LOC100130744 uncharacterized LOC100130744 2.18778
RICTOR RPTOR independent companion of MTOR, complex 2 2.18778
SPEF2 sperm flagellar 2 2.18778
MIR3650 microRNA 3650 2.18778
MIR4637 microRNA 4637 2.18778
LIFR leukemia inhibitory factor receptor alpha 2.18778
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 2.18778
DAB2 Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 2.18778
GDNF-AS1 GDNF antisense RNA 1 (head to head) 2.18778
C6 complement component 6 2.18778
C9 complement component 9 2.18778
FYB FYN binding protein 2.18778
EGFLAM-AS4 EGFLAM antisense RNA 4 2.18778
DNAH5 dynein, axonemal, heavy chain 5 2.18778
EGFLAM EGF-like, fibronectin type III and laminin G domains 2.18778
WDR70 WD repeat domain 70 2.18778
LOC153684 uncharacterized LOC153684 2.18124
LOC100132356 uncharacterized LOC100132356 2.18124
LOC648987 uncharacterized LOC648987 2.18124
C5ORF51 chromosome 5 open reading frame 51 2.18124
TRIO trio Rho guanine nucleotide exchange factor 2.18124
FBXO4 F-box protein 4 2.18124
OXCT1 3-oxoacid CoA transferase 1 2.18124
CCL28 chemokine (C-C motif) ligand 28 2.18124
ZNF131 zinc finger protein 131 2.18124
CAPSL calcyphosine-like 2.18124
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) 2.18124
NIPBL Nipped-B homolog (Drosophila) 2.18124
ANXA2R annexin A2 receptor 2.18124
GHR growth hormone receptor 2.18124
LOC100506639 uncharacterized LOC100506639 2.18124
OSMR oncostatin M receptor 2.18124
LOC646719 2.18124
SKP2 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase 2.17694
FBXL7 F-box and leucine-rich repeat protein 7 2.17694
SEPP1 selenoprotein P, plasma, 1 2.17694
CCDC152 coiled-coil domain containing 152 2.17694
UGT3A2 UDP glycosyltransferase 3 family, polypeptide A2 2.17694
UGT3A1 UDP glycosyltransferase 3 family, polypeptide A1 2.17694
MRPS30 mitochondrial ribosomal protein S30 2.17694
C5ORF28 chromosome 5 open reading frame 28 2.17694
LMBRD2 LMBR1 domain containing 2 2.17694
PAIP1 poly(A) binding protein interacting protein 1 2.17694
MIR580 microRNA 580 2.17694
RANBP3L RAN binding protein 3-like 2.17694
C5ORF34 chromosome 5 open reading frame 34 2.17694
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 2.16947
AGXT2 alanine--glyoxylate aminotransferase 2 2.16947
RAI14 retinoic acid induced 14 2.16947
DNAJC21 DnaJ (Hsp40) homolog, subfamily C, member 21 2.16947
TTC23L tetratricopeptide repeat domain 23-like 2.16947
PRLR prolactin receptor 2.16947
FGF10 fibroblast growth factor 10 2.16947
BRIX1 BRX1, biogenesis of ribosomes 2.16947
RAD1 RAD1 checkpoint DNA exonuclease 2.16947
NNT nicotinamide nucleotide transhydrogenase 2.16816
LOC340107 uncharacterized LOC340107 2.16307
ADCY2 adenylate cyclase 2 (brain) 2.05422
MIR4279 microRNA 4279 2.05311
MTMR12 myotubularin related protein 12 2.05311
ZFR zinc finger RNA binding protein 2.05311
ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 2.05242
LOC285692 uncharacterized LOC285692 2.0522
GOLPH3 golgi phosphoprotein 3 (coat-protein) 2.0521
PDZD2 PDZ domain containing 2 2.0521
CTNND2 catenin (cadherin-associated protein), delta 2 2.05129
LSP1P3 lymphocyte-specific protein 1 pseudogene 3 2.05072
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 2.05045
PRDM9 PR domain containing 9 2.05041
CDH10 cadherin 10, type 2 (T2-cadherin) 2.05014
CDH9 cadherin 9, type 2 (T1-cadherin) 2.04969
PMCHL1 pro-melanin-concentrating hormone-like 1, pseudogene 2.04969
GUSBP1 glucuronidase, beta pseudogene 1 2.0489
CDH18 cadherin 18, type 2 2.0489
CDH12 cadherin 12, type 2 (N-cadherin 2) 2.0489

low copy number

Symbol Name Standardized Value
SACM1L SAC1 suppressor of actin mutations 1-like (yeast) -5.12655
LIMD1-AS1 LIMD1 antisense RNA 1 -5.12655
LIMD1 LIM domains containing 1 -5.12655
GRID2 glutamate receptor, ionotropic, delta 2 -3.53061
MIR3924 microRNA 3924 -3.29865
FAM3A family with sequence similarity 3, member A -3.2703
G6PD glucose-6-phosphate dehydrogenase -3.2703
RHD Rh blood group, D antigen -3.17091
IFT88 intraflagellar transport 88 -3.06578
CRYL1 crystallin, lambda 1 -3.05881
MIR4509-1 microRNA 4509-1 -2.86134
OR52N5 olfactory receptor, family 52, subfamily N, member 5 -2.84224
EQTN equatorin, sperm acrosome associated -2.83167
MOB3B MOB kinase activator 3B -2.83114
LINC00032 long intergenic non-protein coding RNA 32 -2.82909
TEK TEK tyrosine kinase, endothelial -2.82318
IFT74 intraflagellar transport 74 -2.82083
LOC100506422 putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 -2.79871
TUSC1 tumor suppressor candidate 1 -2.78941
IZUMO3 IZUMO family member 3 -2.77409
ELAVL2 ELAV like neuron-specific RNA binding protein 2 -2.74526
OR52N1 olfactory receptor, family 52, subfamily N, member 1 -2.73524
BTNL3 butyrophilin-like 3 -2.72661