Geographic Atrophy Gene Set

Dataset HuGE Navigator Gene-Phenotype Associations
Category disease or phenotype associations
Type phenotype
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Genes

40 genes associated with the Geographic Atrophy phenotype by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.

Symbol Name
ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4
APOE apolipoprotein E
ARMS2 age-related maculopathy susceptibility 2
C2 complement component 2
C3 complement component 3
CFB complement factor B
CFH complement factor H
CFHR1 complement factor H-related 1
CFHR2 complement factor H-related 2
CFHR3 complement factor H-related 3
CFHR4 complement factor H-related 4
CFHR5 complement factor H-related 5
CFI complement factor I
CST3 cystatin C
CX3CR1 chemokine (C-X3-C motif) receptor 1
CYP46A1 cytochrome P450, family 46, subfamily A, polypeptide 1
DMTF1 cyclin D binding myb-like transcription factor 1
F13B coagulation factor XIII, B polypeptide
FGF2 fibroblast growth factor 2 (basic)
GSTM1 glutathione S-transferase mu 1
GSTT1 glutathione S-transferase theta 1
HMCN1 hemicentin 1
HTRA1 HtrA serine peptidase 1
LIPC lipase, hepatic
LOXL1 lysyl oxidase-like 1
MUTYH mutY homolog
OGG1 8-oxoguanine DNA glycosylase
PON1 paraoxonase 1
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila)
RORA RAR-related orphan receptor A
SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1
SOD2 superoxide dismutase 2, mitochondrial
SYN3 synapsin III
TFR2 transferrin receptor 2
TIMP3 TIMP metallopeptidase inhibitor 3
TLR3 toll-like receptor 3
TLR4 toll-like receptor 4
UNG uracil-DNA glycosylase
VEGFA vascular endothelial growth factor A
VLDLR very low density lipoprotein receptor