D341MED Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: medulloblastoma (Cell Line Ontology, CLO_0002677)
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Genes

218 genes with high or low copy number in D341MED relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LRRC6 leucine rich repeat containing 6 3.2803
MIR30B microRNA 30b 3.2803
MIR30D microRNA 30d 3.2803
COL22A1 collagen, type XXII, alpha 1 3.2803
LOC286094 3.2803
TMEM71 transmembrane protein 71 3.26418
PHF20L1 PHD finger protein 20-like 1 3.26268
PEX7 peroxisomal biogenesis factor 7 2.84812
ZFAT zinc finger and AT hook domain containing 2.59999
H2BFM H2B histone family, member M 2.20946
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 2.16734
TMSB15B thymosin beta 15B 2.09602
SCG5 secretogranin V 2.09449
H2BFWT H2B histone family, member W, testis-specific 2.00702
NKAIN2 Na+/K+ transporting ATPase interacting 2 1.94887
CASC8 cancer susceptibility candidate 8 (non-protein coding) 1.608
POU5F1B POU class 5 homeobox 1B 1.57436
HERC2P2 hect domain and RLD 2 pseudogene 2 1.39214
MYC v-myc avian myelocytomatosis viral oncogene homolog 1.36738

low copy number

Symbol Name Standardized Value
DRP2 dystrophin related protein 2 -3.21049
MGC27382 uncharacterized MGC27382 -3.21049
STYX serine/threonine/tyrosine interacting protein -2.79286
PSMC6 proteasome (prosome, macropain) 26S subunit, ATPase, 6 -2.79286
ACBD6 acyl-CoA binding domain containing 6 -2.59447
CYTH1 cytohesin 1 -2.38205
BMF Bcl2 modifying factor -2.35203
WASF3 WAS protein family, member 3 -2.3514
TMEM236 transmembrane protein 236 -2.30477
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -2.29795
MIR511 microRNA 511 -2.28446
CYP1B1-AS1 CYP1B1 antisense RNA 1 -2.15751
FNDC3B fibronectin type III domain containing 3B -2.15325
PSMD1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 -2.14913
HTR2B 5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled -2.14913
C2ORF72 chromosome 2 open reading frame 72 -2.14876
MRC1 mannose receptor, C type 1 -2.14245
FAM13A family with sequence similarity 13, member A -2.13858
R3HDM1 R3H domain containing 1 -2.1329
SPATA3-AS1 SPATA3 antisense RNA 1 (head to head) -2.12345
ARMC9 armadillo repeat containing 9 -2.11918
MIR4777 microRNA 4777 -2.1189
XG Xg blood group -2.09288
MIR514A1 microRNA 514a-1 -2.09288
CNTNAP4 contactin associated protein-like 4 -2.09245
CYP4F30P cytochrome P450, family 4, subfamily F, polypeptide 30, pseudogene -2.07499
MAVS mitochondrial antiviral signaling protein -2.05909
SPATA3 spermatogenesis associated 3 -2.05611
ALOX15 arachidonate 15-lipoxygenase -2.02966
OR2T10 olfactory receptor, family 2, subfamily T, member 10 -1.99088
CFC1 cripto, FRL-1, cryptic family 1 -1.98983
OR2T11 olfactory receptor, family 2, subfamily T, member 11 (gene/pseudogene) -1.98543
LTBP1 latent transforming growth factor beta binding protein 1 -1.9289
MYO3B myosin IIIB -1.9181
COL6A5 collagen, type VI, alpha 5 -1.874
MCTP2 multiple C2 domains, transmembrane 2 -1.80954
ABR active BCR-related -1.72543
ZCCHC16 zinc finger, CCHC domain containing 16 -1.71686
BIN1 bridging integrator 1 -1.69193
HS1BP3 HCLS1 binding protein 3 -1.66878
FAM66E family with sequence similarity 66, member E -1.54836
OVCA2 ovarian tumor suppressor candidate 2 -1.51473
DPH1 diphthamide biosynthesis 1 -1.51473
MIR132 microRNA 132 -1.51451
MIR212 microRNA 212 -1.51451
OR1G1 olfactory receptor, family 1, subfamily G, member 1 -1.51278
OR1A2 olfactory receptor, family 1, subfamily A, member 2 -1.51256
CLUH clustered mitochondria (cluA/CLU1) homolog -1.51253
HIC1 hypermethylated in cancer 1 -1.51252
OR1D2 olfactory receptor, family 1, subfamily D, member 2 -1.51165
OR1A1 olfactory receptor, family 1, subfamily A, member 1 -1.51142
OR3A1 olfactory receptor, family 3, subfamily A, member 1 -1.51104
OR3A2 olfactory receptor, family 3, subfamily A, member 2 -1.51104
SNORD91A small nucleolar RNA, C/D box 91A -1.49283
SRR serine racemase -1.49283
TSR1 TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) -1.49283
SNORD91B small nucleolar RNA, C/D box 91B -1.49283
MNT MAX network transcriptional repressor -1.49256
PCCB propionyl CoA carboxylase, beta polypeptide -1.49217
EVPLL envoplakin-like -1.48725
MIR1253 microRNA 1253 -1.48707
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) -1.48689
OR1E2 olfactory receptor, family 1, subfamily E, member 2 -1.48625
OR1D4 olfactory receptor, family 1, subfamily D, member 4 (gene/pseudogene) -1.4858
OR3A3 olfactory receptor, family 3, subfamily A, member 3 -1.48533
OR1E1 olfactory receptor, family 1, subfamily E, member 1 -1.48533
SPATA22 spermatogenesis associated 22 -1.48528
ASPA aspartoacylase -1.48528
SERPINF2 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 -1.48451
TRPV3 transient receptor potential cation channel, subfamily V, member 3 -1.47453
RPA1 replication protein A1, 70kDa -1.47345
RYR3 ryanodine receptor 3 -1.47299
MIR22HG MIR22 host gene -1.47249
MIR22 microRNA 22 -1.47249
TLCD2 TLC domain containing 2 -1.47249
WDR81 WD repeat domain 81 -1.47249
METTL16 methyltransferase like 16 -1.47166
P2RX5 purinergic receptor P2X, ligand gated ion channel, 5 -1.47071
TAX1BP3 Tax1 (human T-cell leukemia virus type I) binding protein 3 -1.47071
EMC6 ER membrane protein complex subunit 6 -1.47071
P2RX5-TAX1BP3 P2RX5-TAX1BP3 readthrough (NMD candidate) -1.47071
BHLHA9 basic helix-loop-helix family, member a9 -1.47063
TUSC5 tumor suppressor candidate 5 -1.47012
ATP2A3 ATPase, Ca++ transporting, ubiquitous -1.46516
P2RX1 purinergic receptor P2X, ligand gated ion channel, 1 -1.46408
MYBBP1A MYB binding protein (P160) 1a -1.464
GGT6 gamma-glutamyltransferase 6 -1.46392
SPNS2 spinster homolog 2 (Drosophila) -1.46376
CAMKK1 calcium/calmodulin-dependent protein kinase kinase 1, alpha -1.46354
RTN4RL1 reticulon 4 receptor-like 1 -1.46194
GSG2 germ cell associated 2 (haspin) -1.46089
OR3A4P olfactory receptor, family 3, subfamily A, member 4 pseudogene -1.46002
SHPK sedoheptulokinase -1.45909
TBC1D28 TBC1 domain family, member 28 -1.45361
MYO1C myosin IC -1.45006
PITPNA-AS1 PITPNA antisense RNA 1 -1.44968
INPP5K inositol polyphosphate-5-phosphatase K -1.44911
SCARF1 scavenger receptor class F, member 1 -1.44886
RILP Rab interacting lysosomal protein -1.44886
PRPF8 pre-mRNA processing factor 8 -1.44886
MIEF2 mitochondrial elongation factor 2 -1.44462
SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 -1.44449
OR1D5 olfactory receptor, family 1, subfamily D, member 5 -1.44446
ALKBH5 AlkB family member 5, RNA demethylase -1.44422
LLGL1 lethal giant larvae homolog 1 (Drosophila) -1.44422
FLII flightless I homolog (Drosophila) -1.44422
SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 -1.43849
SLC47A1 solute carrier family 47 (multidrug and toxin extrusion), member 1 -1.43481
SMYD4 SET and MYND domain containing 4 -1.42864
CRK v-crk avian sarcoma virus CT10 oncogene homolog -1.42729
SLC43A2 solute carrier family 43 (amino acid system L transporter), member 2 -1.42683
MAPK7 mitogen-activated protein kinase 7 -1.42658
B9D1 B9 protein domain 1 -1.42658
RNF112 ring finger protein 112 -1.42658
MIR1180 microRNA 1180 -1.42658
MFAP4 microfibrillar-associated protein 4 -1.42658
FOXO3B forkhead box O3B pseudogene -1.42529
ZNF286B zinc finger protein 286B -1.42508
SHMT1 serine hydroxymethyltransferase 1 (soluble) -1.42345
RNMTL1 RNA methyltransferase like 1 -1.42336
SGSM2 small G protein signaling modulator 2 -1.4226
TOP3A topoisomerase (DNA) III alpha -1.42235
EPN2-IT1 EPN2 intronic transcript 1 -1.42155
EPN2-AS1 EPN2 antisense RNA 1 -1.42026
C17ORF85 chromosome 17 open reading frame 85 -1.42023
CTNS cystinosin, lysosomal cystine transporter -1.4151
ALDH3A2 aldehyde dehydrogenase 3 family, member A2 -1.41103
TRIM16L tripartite motif containing 16-like -1.40553
FAM83G family with sequence similarity 83, member G -1.40402
AKAP10 A kinase (PRKA) anchor protein 10 -1.40389
DBIL5P diazepam binding inhibitor-like 5, pseudogene -1.40283
GEMIN4 gem (nuclear organelle) associated protein 4 -1.40283
FAM57A family with sequence similarity 57, member A -1.40283
SMG6 SMG6 nonsense mediated mRNA decay factor -1.40198
SLC47A2 solute carrier family 47 (multidrug and toxin extrusion), member 2 -1.40115
GLOD4 glyoxalase domain containing 4 -1.40076
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -1.39901
FBXW10 F-box and WD repeat domain containing 10 -1.39396
TVP23B trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) -1.39378
C17ORF97 chromosome 17 open reading frame 97 -1.39336
FAM101B family with sequence similarity 101, member B -1.3878
ATPAF2 ATP synthase mitochondrial F1 complex assembly factor 2 -1.38401
DRG2 developmentally regulated GTP binding protein 2 -1.383
CYB5D2 cytochrome b5 domain containing 2 -1.38242
PLD6 phospholipase D family, member 6 -1.38233
MYO15A myosin XVA -1.38233
COPS3 COP9 signalosome subunit 3 -1.38086
SMTNL2 smoothelin-like 2 -1.38039
MIR33B microRNA 33b -1.37649
SREBF1 sterol regulatory element binding transcription factor 1 -1.37616
SMCR5 Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding) -1.376
PRPSAP2 phosphoribosyl pyrophosphate synthetase-associated protein 2 -1.3741
EPN2 epsin 2 -1.37391
LRRC48 leucine rich repeat containing 48 -1.37321
NAIP NLR family, apoptosis inhibitory protein -1.36958
UBE2G1 ubiquitin-conjugating enzyme E2G 1 -1.36707
ANKFY1 ankyrin repeat and FYVE domain containing 1 -1.36654
ULK2 unc-51 like autophagy activating kinase 2 -1.36581
TOM1L2 target of myb1-like 2 (chicken) -1.3657
FLCN folliculin -1.36377
RNF219-AS1 RNF219 antisense RNA 1 -1.36323
MED9 mediator complex subunit 9 -1.35505
RASD1 RAS, dexamethasone-induced 1 -1.35505
TIMM22 translocase of inner mitochondrial membrane 22 homolog (yeast) -1.3527
PITPNA phosphatidylinositol transfer protein, alpha -1.34902
ZZEF1 zinc finger, ZZ-type with EF-hand domain 1 -1.34774
FAM106CP family with sequence similarity 106, member C, pseudogene -1.34744
GID4 GID complex subunit 4 -1.34681
MPRIP myosin phosphatase Rho interacting protein -1.3454
ZNF287 zinc finger protein 287 -1.34284
ZNF624 zinc finger protein 624 -1.34276
DOC2B double C2-like domains, beta -1.34174
GUSBP9 glucuronidase, beta pseudogene 9 -1.3395
MIR1288 microRNA 1288 -1.33366
UBB ubiquitin B -1.33363
CENPV centromere protein V -1.33359
MIR3183 microRNA 3183 -1.33349
VMO1 vitelline membrane outer layer 1 homolog (chicken) -1.3276
PSMB6 proteasome (prosome, macropain) subunit, beta type, 6 -1.32751
MINK1 misshapen-like kinase 1 -1.32751
GLTPD2 glycolipid transfer protein domain containing 2 -1.32751
C17ORF107 chromosome 17 open reading frame 107 -1.32751
PLD2 phospholipase D2 -1.32751
CHRNE cholinergic receptor, nicotinic, epsilon (muscle) -1.32751
TM4SF5 transmembrane 4 L six family member 5 -1.32726
TRPV1 transient receptor potential cation channel, subfamily V, member 1 -1.32715
ENO3 enolase 3 (beta, muscle) -1.32707
RNF167 ring finger protein 167 -1.32707
GP1BA glycoprotein Ib (platelet), alpha polypeptide -1.32707
PFN1 profilin 1 -1.32707
SLC25A11 solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 -1.32707
SPAG7 sperm associated antigen 7 -1.32707
CAMTA2 calmodulin binding transcription activator 2 -1.32707
INCA1 inhibitor of CDK, cyclin A1 interacting protein 1 -1.32707
SLC52A1 solute carrier family 52 (riboflavin transporter), member 1 -1.32692
KIF1C kinesin family member 1C -1.32653
FAM64A family with sequence similarity 64, member A -1.32435
AIPL1 aryl hydrocarbon receptor interacting protein-like 1 -1.32412
PIGL phosphatidylinositol glycan anchor biosynthesis, class L -1.32202