Cerebral cortex Gene Set

Dataset Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles
Category transcriptomics
Type tissue
Description The surface layer of gray matter of the cerebrum that functions chiefly in coordination of sensory and motor information. (BRENDA Tissue and Enzyme Source Ontology, BTO_0000233)
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Genes

149 genes with high or low expression in Cerebral cortex relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
EOMES eomesodermin 1.19449
GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 1.0175

low expression

Symbol Name Standardized Value
HOXD10 homeobox D10 -3.06509
SLC9B2 solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2 -2.48765
GBX2 gastrulation brain homeobox 2 -2.39984
CABYR calcium binding tyrosine-(Y)-phosphorylation regulated -2.28551
SLC6A18 solute carrier family 6 (neutral amino acid transporter), member 18 -2.20742
CASC1 cancer susceptibility candidate 1 -2.16881
OXT oxytocin/neurophysin I prepropeptide -2.08594
IRAK3 interleukin-1 receptor-associated kinase 3 -2.02368
MIS18BP1 MIS18 binding protein 1 -1.96153
MSTO1 misato 1, mitochondrial distribution and morphology regulator -1.94704
SLC24A1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 -1.87575
POC1B POC1 centriolar protein B -1.85944
PTPN18 protein tyrosine phosphatase, non-receptor type 18 (brain-derived) -1.8339
MYH7 myosin, heavy chain 7, cardiac muscle, beta -1.83076
ABCA13 ATP-binding cassette, sub-family A (ABC1), member 13 -1.81704
ZNF384 zinc finger protein 384 -1.79516
RHBG Rh family, B glycoprotein (gene/pseudogene) -1.72136
PRPF4 pre-mRNA processing factor 4 -1.71502
ZDHHC12 zinc finger, DHHC-type containing 12 -1.70043
TACR2 tachykinin receptor 2 -1.69339
TAAR5 trace amine associated receptor 5 -1.68971
CEACAM1 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) -1.68165
IL18RAP interleukin 18 receptor accessory protein -1.67146
BIRC3 baculoviral IAP repeat containing 3 -1.66444
ELF4 E74-like factor 4 (ets domain transcription factor) -1.64599
PPP1R3A protein phosphatase 1, regulatory subunit 3A -1.64522
GJD3 gap junction protein, delta 3, 31.9kDa -1.62563
SLC26A1 solute carrier family 26 (anion exchanger), member 1 -1.602
C14ORF39 chromosome 14 open reading frame 39 -1.58879
SLC2A9 solute carrier family 2 (facilitated glucose transporter), member 9 -1.5558
BPIFC BPI fold containing family C -1.55438
BNIPL BCL2/adenovirus E1B 19kD interacting protein like -1.54604
FAM173B family with sequence similarity 173, member B -1.54349
EPHX3 epoxide hydrolase 3 -1.53558
TEKT4 tektin 4 -1.51699
TBC1D25 TBC1 domain family, member 25 -1.50664
FFAR2 free fatty acid receptor 2 -1.49434
EPPIN-WFDC6 EPPIN-WFDC6 readthrough -1.47222
GNAT2 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 -1.45678
NUP37 nucleoporin 37kDa -1.45659
XPNPEP2 X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound -1.43287
NRF1 nuclear respiratory factor 1 -1.43025
CORIN corin, serine peptidase -1.42157
IRF6 interferon regulatory factor 6 -1.41147
NGFR nerve growth factor receptor -1.39829
WDR72 WD repeat domain 72 -1.37916
ITGAE integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) -1.37629
NPB neuropeptide B -1.36863
ATP2C1 ATPase, Ca++ transporting, type 2C, member 1 -1.36413
GLYAT glycine-N-acyltransferase -1.3571
NBR1 neighbor of BRCA1 gene 1 -1.35264
IL13RA2 interleukin 13 receptor, alpha 2 -1.35242
SLC22A15 solute carrier family 22, member 15 -1.35112
LRRC18 leucine rich repeat containing 18 -1.31968
DAPL1 death associated protein-like 1 -1.29428
SLC28A3 solute carrier family 28 (concentrative nucleoside transporter), member 3 -1.29054
IGSF23 immunoglobulin superfamily, member 23 -1.28563
SAMD3 sterile alpha motif domain containing 3 -1.28306
CCDC169-SOHLH2 CCDC169-SOHLH2 readthrough -1.26391
CLEC4M C-type lectin domain family 4, member M -1.25699
TUBE1 tubulin, epsilon 1 -1.24258
MZT1 mitotic spindle organizing protein 1 -1.23644
SMIM5 small integral membrane protein 5 -1.22677
CAST calpastatin -1.22646
UBXN10 UBX domain protein 10 -1.22639
AIF1 allograft inflammatory factor 1 -1.22626
STK33 serine/threonine kinase 33 -1.223
IL22RA1 interleukin 22 receptor, alpha 1 -1.22067
MMP27 matrix metallopeptidase 27 -1.21725
ARHGAP28 Rho GTPase activating protein 28 -1.21265
UCN3 urocortin 3 -1.20963
STIL SCL/TAL1 interrupting locus -1.20607
IFNK interferon, kappa -1.20356
C4ORF51 chromosome 4 open reading frame 51 -1.19789
C7ORF62 chromosome 7 open reading frame 62 -1.19756
MLANA melan-A -1.18807
NR1H3 nuclear receptor subfamily 1, group H, member 3 -1.18561
FLT3LG fms-related tyrosine kinase 3 ligand -1.17912
PARD6G par-6 family cell polarity regulator gamma -1.1787
KLRD1 killer cell lectin-like receptor subfamily D, member 1 -1.17668
OR4C3 olfactory receptor, family 4, subfamily C, member 3 -1.17581
DTL denticleless E3 ubiquitin protein ligase homolog (Drosophila) -1.17465
KDELR2 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 -1.17166
RPL12 ribosomal protein L12 -1.17138
LY6G5B lymphocyte antigen 6 complex, locus G5B -1.16959
RTEL1 regulator of telomere elongation helicase 1 -1.16753
ICAM1 intercellular adhesion molecule 1 -1.16596
AWAT1 acyl-CoA wax alcohol acyltransferase 1 -1.16545
RYR3 ryanodine receptor 3 -1.16377
CREBZF CREB/ATF bZIP transcription factor -1.15981
ARL9 ADP-ribosylation factor-like 9 -1.15521
GPR55 G protein-coupled receptor 55 -1.15328
ZNF394 zinc finger protein 394 -1.15141
GHRH growth hormone releasing hormone -1.14985
HDAC10 histone deacetylase 10 -1.14899
SLC13A1 solute carrier family 13 (sodium/sulfate symporter), member 1 -1.1485
SYCP3 synaptonemal complex protein 3 -1.14033
SPAST spastin -1.13914
TMEM258 transmembrane protein 258 -1.13244
KISS1R KISS1 receptor -1.13084
DMRT3 doublesex and mab-3 related transcription factor 3 -1.13057
SNX22 sorting nexin 22 -1.1224
MOB3A MOB kinase activator 3A -1.12084
GGN gametogenetin -1.10542
WDR64 WD repeat domain 64 -1.1016
NRL neural retina leucine zipper -1.10117
STEAP4 STEAP family member 4 -1.08796
ZNF423 zinc finger protein 423 -1.08679
MBD5 methyl-CpG binding domain protein 5 -1.0799
HACD4 3-hydroxyacyl-CoA dehydratase 4 -1.07791
MGAM maltase-glucoamylase -1.07784
OR51A7 olfactory receptor, family 51, subfamily A, member 7 -1.07414
TAF4B TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa -1.06892
LRRC72 leucine rich repeat containing 72 -1.06335
LRRC52 leucine rich repeat containing 52 -1.0628
IZUMO1 izumo sperm-egg fusion 1 -1.06015
TCTEX1D1 Tctex1 domain containing 1 -1.05799
CLDND2 claudin domain containing 2 -1.05581
DENND6A DENN/MADD domain containing 6A -1.05212
OR4D5 olfactory receptor, family 4, subfamily D, member 5 -1.05199
MRGPRD MAS-related GPR, member D -1.05121
IL1RL1 interleukin 1 receptor-like 1 -1.04819
C2ORF61 chromosome 2 open reading frame 61 -1.04798
PGM1 phosphoglucomutase 1 -1.04604
LAD1 ladinin 1 -1.04174
FAM217A family with sequence similarity 217, member A -1.04152
PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 -1.04039
TTC34 tetratricopeptide repeat domain 34 -1.03713
GP2 glycoprotein 2 (zymogen granule membrane) -1.03628
TMEM207 transmembrane protein 207 -1.02977
RPN2 ribophorin II -1.02946
IFT43 intraflagellar transport 43 -1.02665
PRSS41 protease, serine, 41 -1.02519
MAGEE2 melanoma antigen family E2 -1.02296
CA9 carbonic anhydrase IX -1.02135
HECA headcase homolog (Drosophila) -1.02133
BANF2 barrier to autointegration factor 2 -1.01968
ACSM5 acyl-CoA synthetase medium-chain family member 5 -1.01903
HMX1 H6 family homeobox 1 -1.01505
A1BG alpha-1-B glycoprotein -1.01315
RFWD2 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase -1.01304
UPK3BL uroplakin 3B-like -1.01276
CHRNB1 cholinergic receptor, nicotinic, beta 1 (muscle) -1.01122
LY75 lymphocyte antigen 75 -1.01102
PFKFB1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 -1.0032
SLC22A18 solute carrier family 22, member 18 -1.00304
EN2 engrailed homeobox 2 -1.00024