Brain Lower Grade Glioma_LGG_TCGA-VM-A8C8-01A-11R-A36H-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

352 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-VM-A8C8-01A-11R-A36H-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABCC13 ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene
ABCC6P2 ATP-binding cassette, sub-family C, member 6 pseudogene 2
ABCF3 ATP-binding cassette, sub-family F (GCN20), member 3
ABHD17C abhydrolase domain containing 17C
ACADVL acyl-CoA dehydrogenase, very long chain
ACAT1 acetyl-CoA acetyltransferase 1
ACTL7A actin-like 7A
ADCY8 adenylate cyclase 8 (brain)
ADD3 adducin 3 (gamma)
ADK adenosine kinase
AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
AHCTF1 AT hook containing transcription factor 1
AIRE autoimmune regulator
AK8 adenylate kinase 8
AKR1A1 aldo-keto reductase family 1, member A1 (aldehyde reductase)
ALKBH1 alkB, alkylation repair homolog 1 (E. coli)
AMOTL1 angiomotin like 1
AMY1A amylase, alpha 1A (salivary)
ANXA9 annexin A9
AP1S2 adaptor-related protein complex 1, sigma 2 subunit
APOH apolipoprotein H (beta-2-glycoprotein I)
AS3MT arsenite methyltransferase
ASAH1 N-acylsphingosine amidohydrolase (acid ceramidase) 1
ASMTL-AS1 ASMTL antisense RNA 1
ATG16L2 autophagy related 16-like 2 (S. cerevisiae)
BAAT bile acid CoA:amino acid N-acyltransferase
BBS2 Bardet-Biedl syndrome 2
BCL6 B-cell CLL/lymphoma 6
C10ORF32 chromosome 10 open reading frame 32
C11ORF16 chromosome 11 open reading frame 16
C11ORF54 chromosome 11 open reading frame 54
C11ORF65 chromosome 11 open reading frame 65
C15ORF40 chromosome 15 open reading frame 40
C16ORF46 chromosome 16 open reading frame 46
C16ORF86 chromosome 16 open reading frame 86
C19ORF44 chromosome 19 open reading frame 44
C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
C1ORF123 chromosome 1 open reading frame 123
C1ORF146 chromosome 1 open reading frame 146
C1QTNF3 C1q and tumor necrosis factor related protein 3
C1QTNF9B C1q and tumor necrosis factor related protein 9B
C2ORF76 chromosome 2 open reading frame 76
C8ORF44 chromosome 8 open reading frame 44
C9ORF139 chromosome 9 open reading frame 139
CARD14 caspase recruitment domain family, member 14
CATSPER4 cation channel, sperm associated 4
CC2D2B coiled-coil and C2 domain containing 2B
CCBL1 cysteine conjugate-beta lyase, cytoplasmic
CCDC160 coiled-coil domain containing 160
CCDC163P coiled-coil domain containing 163, pseudogene
CCDC17 coiled-coil domain containing 17
CCDC84 coiled-coil domain containing 84
CCS copper chaperone for superoxide dismutase
CDIP1 cell death-inducing p53 target 1
CDKL3 cyclin-dependent kinase-like 3
CECR5-AS1 CECR5 antisense RNA 1
CFHR2 complement factor H-related 2
CHD1L chromodomain helicase DNA binding protein 1-like
CHRD chordin
CHST15 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
CIART circadian associated repressor of transcription
CPSF7 cleavage and polyadenylation specific factor 7, 59kDa
CRYL1 crystallin, lambda 1
CRYZL1 crystallin, zeta (quinone reductase)-like 1
CTSF cathepsin F
CTSH cathepsin H
CYB5D2 cytochrome b5 domain containing 2
CYP2J2 cytochrome P450, family 2, subfamily J, polypeptide 2
CYR61 cysteine-rich, angiogenic inducer, 61
DDIT4 DNA-damage-inducible transcript 4
DDX25 DEAD (Asp-Glu-Ala-Asp) box helicase 25
DDX59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
DEFB131 defensin, beta 131
DFNB59 deafness, autosomal recessive 59
DHRS12 dehydrogenase/reductase (SDR family) member 12
DHRS3 dehydrogenase/reductase (SDR family) member 3
DISP1 dispatched homolog 1 (Drosophila)
EAF2 ELL associated factor 2
EAPP E2F-associated phosphoprotein
EBAG9 estrogen receptor binding site associated, antigen, 9
ECE2 endothelin converting enzyme 2
EED embryonic ectoderm development
EIF1AX eukaryotic translation initiation factor 1A, X-linked
EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa
EMC2 ER membrane protein complex subunit 2
ENY2 enhancer of yellow 2 homolog (Drosophila)
EPS15L1 epidermal growth factor receptor pathway substrate 15-like 1
EQTN equatorin, sperm acrosome associated
ESD esterase D
EXOC3-AS1 EXOC3 antisense RNA 1
EXT1 exostosin glycosyltransferase 1
FAM167A family with sequence similarity 167, member A
FAM170A family with sequence similarity 170, member A
FAM189A2 family with sequence similarity 189, member A2
FAM204A family with sequence similarity 204, member A
FAM27C family with sequence similarity 27, member C
FAM69A family with sequence similarity 69, member A
FAM76A family with sequence similarity 76, member A
FAM92A1 family with sequence similarity 92, member A1
FBXL22 F-box and leucine-rich repeat protein 22
FBXO31 F-box protein 31
FBXO32 F-box protein 32
FBXO42 F-box protein 42
FDX1 ferredoxin 1
FIGLA folliculogenesis specific basic helix-loop-helix
FLJ37453 uncharacterized LOC729614
FLVCR1-AS1 FLVCR1 antisense RNA 1 (head to head)
FOLR2 folate receptor 2 (fetal)
FOXO1 forkhead box O1
FRAT1 frequently rearranged in advanced T-cell lymphomas 1
FRG2 FSHD region gene 2
FUT4 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)
GABARAPL2 GABA(A) receptor-associated protein-like 2
GADD45G growth arrest and DNA-damage-inducible, gamma
GATA2 GATA binding protein 2
GEMIN8 gem (nuclear organelle) associated protein 8
GJA1 gap junction protein, alpha 1, 43kDa
GLIS1 GLIS family zinc finger 1
GOLGA8DP golgin A8 family, member D, pseudogene
GPATCH3 G patch domain containing 3
GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2
GRAMD3 GRAM domain containing 3
GRHPR glyoxylate reductase/hydroxypyruvate reductase
GRK4 G protein-coupled receptor kinase 4
GSDMC gasdermin C
GSTM1 glutathione S-transferase mu 1
GSTM2 glutathione S-transferase mu 2 (muscle)
GSTM2P1 glutathione S-transferase mu 2 (muscle) pseudogene 1
GSTM3 glutathione S-transferase mu 3 (brain)
GSTM4 glutathione S-transferase mu 4
GTF2H2 general transcription factor IIH, polypeptide 2, 44kDa
HADH hydroxyacyl-CoA dehydrogenase
HDHD1 haloacid dehalogenase-like hydrolase domain containing 1
HDHD2 haloacid dehalogenase-like hydrolase domain containing 2
HEPACAM hepatic and glial cell adhesion molecule
HEPN1 hepatocellular carcinoma, down-regulated 1
HIBCH 3-hydroxyisobutyryl-CoA hydrolase
HIGD1C HIG1 hypoxia inducible domain family, member 1C
HTR3D 5-hydroxytryptamine (serotonin) receptor 3D, ionotropic
HYI hydroxypyruvate isomerase (putative)
IFFO2 intermediate filament family orphan 2
IFT43 intraflagellar transport 43
IL25 interleukin 25
INCA1 inhibitor of CDK, cyclin A1 interacting protein 1
INPP1 inositol polyphosphate-1-phosphatase
INTS12 integrator complex subunit 12
IPO5 importin 5
IQCC IQ motif containing C
JAKMIP2 janus kinase and microtubule interacting protein 2
KAT5 K(lysine) acetyltransferase 5
KBTBD3 kelch repeat and BTB (POZ) domain containing 3
KIR3DL2 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2
KLF9 Kruppel-like factor 9
KLHDC1 kelch domain containing 1
LCNL1 lipocalin-like 1
LILRB5 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5
LINC00051 long intergenic non-protein coding RNA 51
LINC00244 long intergenic non-protein coding RNA 244
LINC00271 long intergenic non-protein coding RNA 271
LIPT1 lipoyltransferase 1
LOC100130264 uncharacterized LOC100130264
LOC286094
LOC494141 solute carrier family 25, member 51 pseudogene
LOC643923 uncharacterized LOC643923
LRRC39 leucine rich repeat containing 39
MARVELD3 MARVEL domain containing 3
MBIP MAP3K12 binding inhibitory protein 1
MC2R melanocortin 2 receptor (adrenocorticotropic hormone)
MCCC2 methylcrotonoyl-CoA carboxylase 2 (beta)
MEIG1 meiosis/spermiogenesis associated 1
METTL3 methyltransferase like 3
MICU2 mitochondrial calcium uptake 2
MRC1 mannose receptor, C type 1
MROH2B maestro heat-like repeat family member 2B
MRPS28 mitochondrial ribosomal protein S28
MS4A12 membrane-spanning 4-domains, subfamily A, member 12
MSRA methionine sulfoxide reductase A
MSX1 msh homeobox 1
MYOZ2 myozenin 2
N4BP2L1 NEDD4 binding protein 2-like 1
NDP Norrie disease (pseudoglioma)
NECAP2 NECAP endocytosis associated 2
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
NIT1 nitrilase 1
NMB neuromedin B
NSUN6 NOP2/Sun domain family, member 6
NT5DC3 5'-nucleotidase domain containing 3
NTM neurotrimin
NUDT13 nudix (nucleoside diphosphate linked moiety X)-type motif 13
NUDT8 nudix (nucleoside diphosphate linked moiety X)-type motif 8
NXF3 nuclear RNA export factor 3
OR10A6 olfactory receptor, family 10, subfamily A, member 6 (gene/pseudogene)
OR1D2 olfactory receptor, family 1, subfamily D, member 2
OR5K1 olfactory receptor, family 5, subfamily K, member 1
ORAOV1 oral cancer overexpressed 1
OSER1 oxidative stress responsive serine-rich 1
OSGIN2 oxidative stress induced growth inhibitor family member 2
PAAF1 proteasomal ATPase-associated factor 1
PARL presenilin associated, rhomboid-like
PC pyruvate carboxylase
PCTP phosphatidylcholine transfer protein
PDGFD platelet derived growth factor D
PER3 period circadian clock 3
PHGDH phosphoglycerate dehydrogenase
PITX3 paired-like homeodomain 3
PLEKHF2 pleckstrin homology domain containing, family F (with FYVE domain) member 2
PMP2 peripheral myelin protein 2
POLR2K polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa
POM121L1P POM121 transmembrane nucleoporin-like 1, pseudogene
PPAPDC1A phosphatidic acid phosphatase type 2 domain containing 1A
PPCDC phosphopantothenoylcysteine decarboxylase
PPP2CB protein phosphatase 2, catalytic subunit, beta isozyme
PPP2R1B protein phosphatase 2, regulatory subunit A, beta
PRKD1 protein kinase D1
PRPF18 pre-mRNA processing factor 18
PRPSAP1 phosphoribosyl pyrophosphate synthetase-associated protein 1
PRTFDC1 phosphoribosyl transferase domain containing 1
PSG8 pregnancy specific beta-1-glycoprotein 8
PSMA8 proteasome (prosome, macropain) subunit, alpha type, 8
PSMB11 proteasome (prosome, macropain) subunit, beta type, 11
RAB28 RAB28, member RAS oncogene family
RAB3IL1 RAB3A interacting protein (rabin3)-like 1
RAB4A RAB4A, member RAS oncogene family
RAB9A RAB9A, member RAS oncogene family
RASD1 RAS, dexamethasone-induced 1
RAVER2 ribonucleoprotein, PTB-binding 2
RBMXL3 RNA binding motif protein, X-linked-like 3
RCCD1 RCC1 domain containing 1
REXO1L1P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene
RGL1 ral guanine nucleotide dissociation stimulator-like 1
RGS11 regulator of G-protein signaling 11
RGS12 regulator of G-protein signaling 12
RGS9 regulator of G-protein signaling 9
RIPK2 receptor-interacting serine-threonine kinase 2
RNF207 ring finger protein 207
RORA RAR-related orphan receptor A
RWDD3 RWD domain containing 3
SAFB2 scaffold attachment factor B2
SAP30 Sin3A-associated protein, 30kDa
SCAND2P SCAN domain containing 2 pseudogene
SCARNA9L small Cajal body-specific RNA 9-like
SCCPDH saccharopine dehydrogenase (putative)
SDC2 syndecan 2
SDR39U1 short chain dehydrogenase/reductase family 39U, member 1
SEPT12 septin 12
SGK3 serum/glucocorticoid regulated kinase family, member 3
SIRPD signal-regulatory protein delta
SKP1 S-phase kinase-associated protein 1
SLC12A4 solute carrier family 12 (potassium/chloride transporter), member 4
SLC13A1 solute carrier family 13 (sodium/sulfate symporter), member 1
SLC19A2 solute carrier family 19 (thiamine transporter), member 2
SLC22A6 solute carrier family 22 (organic anion transporter), member 6
SLC25A33 solute carrier family 25 (pyrimidine nucleotide carrier), member 33
SLC2A7 solute carrier family 2 (facilitated glucose transporter), member 7
SLC37A4 solute carrier family 37 (glucose-6-phosphate transporter), member 4
SLC39A11 solute carrier family 39, member 11
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
SLC9B1 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1
SMIM11 small integral membrane protein 11
SNHG12 small nucleolar RNA host gene 12
SNHG20 small nucleolar RNA host gene 20
SNORA45B small nucleolar RNA, H/ACA box 45B
SNORA52 small nucleolar RNA, H/ACA box 52
SNORA75 small nucleolar RNA, H/ACA box 75
SNORA80E small nucleolar RNA, H/ACA box 80E
SNORD89 small nucleolar RNA, C/D box 89
SNX7 sorting nexin 7
SORD sorbitol dehydrogenase
SPCS2 signal peptidase complex subunit 2 homolog (S. cerevisiae)
SPHAR S-phase response (cyclin related)
SPTSSA serine palmitoyltransferase, small subunit A
SRPX sushi-repeat containing protein, X-linked
SSR4P1 signal sequence receptor, delta pseudogene 1
STAB2 stabilin 2
STOX1 storkhead box 1
STX18 syntaxin 18
SUGCT succinyl-CoA:glutarate-CoA transferase
SYBU syntabulin (syntaxin-interacting)
SYCP2 synaptonemal complex protein 2
TAF6L TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
TBPL1 TBP-like 1
TESK2 testis-specific kinase 2
TEX12 testis expressed 12
TEX30 testis expressed 30
TEX38 testis expressed 38
TIPARP TCDD-inducible poly(ADP-ribose) polymerase
TM2D1 TM2 domain containing 1
TMEM100 transmembrane protein 100
TMEM133 transmembrane protein 133
TMEM136 transmembrane protein 136
TMEM138 transmembrane protein 138
TMEM236 transmembrane protein 236
TMEM80 transmembrane protein 80
TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b
TNIP2 TNFAIP3 interacting protein 2
TRAPPC4 trafficking protein particle complex 4
TRIM50 tripartite motif containing 50
TRIM62 tripartite motif containing 62
TRIT1 tRNA isopentenyltransferase 1
TRPC2 transient receptor potential cation channel, subfamily C, member 2, pseudogene
TSC22D1 TSC22 domain family, member 1
TTC32 tetratricopeptide repeat domain 32
TYRP1 tyrosinase-related protein 1
UFC1 ubiquitin-fold modifier conjugating enzyme 1
USP2 ubiquitin specific peptidase 2
VSX2 visual system homeobox 2
WARS2 tryptophanyl tRNA synthetase 2, mitochondrial
WDR11 WD repeat domain 11
WDR20 WD repeat domain 20
WDR73 WD repeat domain 73
WFDC10B WAP four-disulfide core domain 10B
WFDC13 WAP four-disulfide core domain 13
WWOX WW domain containing oxidoreductase
XPA xeroderma pigmentosum, complementation group A
XRRA1 X-ray radiation resistance associated 1
ZAR1L zygote arrest 1-like
ZBTB3 zinc finger and BTB domain containing 3
ZFAND5 zinc finger, AN1-type domain 5
ZMYND15 zinc finger, MYND-type containing 15
ZNF189 zinc finger protein 189
ZNF436-AS1 ZNF436 antisense RNA 1
ZNF438 zinc finger protein 438
ZNF559 zinc finger protein 559
ZNF703 zinc finger protein 703
ZNF706 zinc finger protein 706
ZNRF3 zinc and ring finger 3
ZRSR2 zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2
ZSCAN10 zinc finger and SCAN domain containing 10

low expression

Symbol Name
BRCC3 BRCA1/BRCA2-containing complex, subunit 3
CAND2 cullin-associated and neddylation-dissociated 2 (putative)
CSTF2 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
CUL4B cullin 4B
FMR1 fragile X mental retardation 1
FYTTD1 forty-two-three domain containing 1
HNRNPH2 heterogeneous nuclear ribonucleoprotein H2 (H')
LSG1 large 60S subunit nuclear export GTPase 1
MECP2 methyl CpG binding protein 2
MORF4L2 mortality factor 4 like 2
NEK9 NIMA-related kinase 9
OPA1 optic atrophy 1 (autosomal dominant)
PDZD11 PDZ domain containing 11
PSMD10 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
RAP2C RAP2C, member of RAS oncogene family
RLIM ring finger protein, LIM domain interacting
SNX12 sorting nexin 12
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
TBK1 TANK-binding kinase 1
TMEM185A transmembrane protein 185A
VMA21 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
WDR44 WD repeat domain 44
XIAP X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase
ZMYM3 zinc finger, MYM-type 3