Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RK-02A-11R-A36H-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

249 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RK-02A-11R-A36H-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABCC10 ATP-binding cassette, sub-family C (CFTR/MRP), member 10
ACAP3 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
ACTL7A actin-like 7A
ADORA2A-AS1 ADORA2A antisense RNA 1
AGAP4 ArfGAP with GTPase domain, ankyrin repeat and PH domain 4
ANGPTL3 angiopoietin-like 3
AOC2 amine oxidase, copper containing 2 (retina-specific)
ARHGDIA Rho GDP dissociation inhibitor (GDI) alpha
ARHGEF10L Rho guanine nucleotide exchange factor (GEF) 10-like
ARL6IP6 ADP-ribosylation factor-like 6 interacting protein 6
ARMC7 armadillo repeat containing 7
ARRDC3 arrestin domain containing 3
ASB16 ankyrin repeat and SOCS box containing 16
ASB16-AS1 ASB16 antisense RNA 1
ASPSCR1 alveolar soft part sarcoma chromosome region, candidate 1
ATXN7L2 ataxin 7-like 2
BAGE B melanoma antigen
BAHCC1 BAH domain and coiled-coil containing 1
BPTF bromodomain PHD finger transcription factor
BRPF1 bromodomain and PHD finger containing, 1
C17ORF104 chromosome 17 open reading frame 104
C17ORF47 chromosome 17 open reading frame 47
C17ORF62 chromosome 17 open reading frame 62
C17ORF70 chromosome 17 open reading frame 70
C17ORF80 chromosome 17 open reading frame 80
C1QL1 complement component 1, q subcomponent-like 1
CANT1 calcium activated nucleotidase 1
CAPN15 calpain 15
CARD14 caspase recruitment domain family, member 14
CBLB Cbl proto-oncogene B, E3 ubiquitin protein ligase
CBX2 chromobox homolog 2
CCDC178 coiled-coil domain containing 178
CCDC183 coiled-coil domain containing 183
CCDC47 coiled-coil domain containing 47
CCDC57 coiled-coil domain containing 57
CCDC71 coiled-coil domain containing 71
CCL3L3 chemokine (C-C motif) ligand 3-like 3
CDK3 cyclin-dependent kinase 3
CDRT15P1 CMT1A duplicated region transcript 15 pseudogene 1
CEP131 centrosomal protein 131kDa
CEP95 centrosomal protein 95kDa
CHMP6 charged multivesicular body protein 6
CHTF18 CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)
CIC capicua transcriptional repressor
CLASRP CLK4-associating serine/arginine rich protein
CNGA1 cyclic nucleotide gated channel alpha 1
CNTN3 contactin 3 (plasmacytoma associated)
COASY CoA synthase
CPT1C carnitine palmitoyltransferase 1C
CROCC ciliary rootlet coiled-coil, rootletin
CROCCP2 ciliary rootlet coiled-coil, rootletin pseudogene 2
CROCCP3 ciliary rootlet coiled-coil, rootletin pseudogene 3
CRYGA crystallin, gamma A
CSNK1D casein kinase 1, delta
CTC1 CTS telomere maintenance complex component 1
CWC25 CWC25 spliceosome-associated protein homolog (S. cerevisiae)
CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9
CYTH1 cytohesin 1
CYTH2 cytohesin 2
DBF4B DBF4 zinc finger B
DDX42 DEAD (Asp-Glu-Ala-Asp) box helicase 42
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5
DEFB109P1B defensin, beta 109, pseudogene 1B
DEFB118 defensin, beta 118
DENND4B DENN/MADD domain containing 4B
DFFB DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)
DKFZP434J0226 uncharacterized LOC93429
DMRTC2 DMRT-like family C2
DNASE1 deoxyribonuclease I
DNASE1L2 deoxyribonuclease I-like 2
DOT1L DOT1-like histone H3K79 methyltransferase
DUS1L dihydrouridine synthase 1-like (S. cerevisiae)
DUSP21 dual specificity phosphatase 21
EFCAB5 EF-hand calcium binding domain 5
EFTUD2 elongation factor Tu GTP binding domain containing 2
EIF4A3 eukaryotic translation initiation factor 4A3
EME1 essential meiotic structure-specific endonuclease 1
ENGASE endo-beta-N-acetylglucosaminidase
ENTHD2 ENTH domain containing 2
EXOC7 exocyst complex component 7
FAM104A family with sequence similarity 104, member A
FAM66E family with sequence similarity 66, member E
FASN fatty acid synthase
FBRSL1 fibrosin-like 1
FCMR Fc fragment of IgM receptor
FLJ37201 tigger transposable element derived 2 pseudogene
FOXD3 forkhead box D3
FOXK2 forkhead box K2
FTSJ3 FtsJ homolog 3 (E. coli)
GGA3 golgi-associated, gamma adaptin ear containing, ARF binding protein 3
GLTSCR1 glioma tumor suppressor candidate region gene 1
GPHB5 glycoprotein hormone beta 5
GPS1 G protein pathway suppressor 1
GSTTP2 glutathione S-transferase theta pseudogene 2
H3F3B H3 histone, family 3B (H3.3B)
HARS2 histidyl-tRNA synthetase 2, mitochondrial
HAUS5 HAUS augmin-like complex, subunit 5
HEATR6 HEAT repeat containing 6
HES4 hes family bHLH transcription factor 4
HEXDC hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
HEXIM1 hexamethylene bis-acetamide inducible 1
HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
HGS hepatocyte growth factor-regulated tyrosine kinase substrate
HIC2 hypermethylated in cancer 2
HIST1H2BF histone cluster 1, H2bf
HIST1H4D histone cluster 1, H4d
HIST2H3C histone cluster 2, H3c
HIST2H3D histone cluster 2, H3d
HIST2H4A histone cluster 2, H4a
HMGB3P1 high mobility group box 3 pseudogene 1
HPSE heparanase
IGFL4 IGF-like family member 4
IL17C interleukin 17C
IRX1 iroquois homeobox 1
KANSL1 KAT8 regulatory NSL complex subunit 1
KCNJ5 potassium channel, inwardly rectifying subfamily J, member 5
LGALS9B lectin, galactoside-binding, soluble, 9B
LIG3 ligase III, DNA, ATP-dependent
LINC00028 long intergenic non-protein coding RNA 28
LIPA lipase A, lysosomal acid, cholesterol esterase
LOC146880 Rho GTPase activating protein 27 pseudogene
LOC150776 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene
LOC284009 uncharacterized LOC284009
LRRC30 leucine rich repeat containing 30
LRRC39 leucine rich repeat containing 39
MAP3K3 mitogen-activated protein kinase kinase kinase 3
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5
MBD3L2 methyl-CpG binding domain protein 3-like 2
MBTD1 mbt domain containing 1
MED24 mediator complex subunit 24
MEP1A meprin A, alpha (PABA peptide hydrolase)
METTL2A methyltransferase like 2A
MIB2 mindbomb E3 ubiquitin protein ligase 2
MKS1 Meckel syndrome, type 1
MROH9 maestro heat-like repeat family member 9
MRPS7 mitochondrial ribosomal protein S7
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog
MYH3 myosin, heavy chain 3, skeletal muscle, embryonic
MYOZ2 myozenin 2
NARF nuclear prelamin A recognition factor
NAT9 N-acetyltransferase 9 (GCN5-related, putative)
NKPD1 NTPase, KAP family P-loop domain containing 1
NLE1 notchless homolog 1 (Drosophila)
NOL11 nucleolar protein 11
NPLOC4 nuclear protein localization 4 homolog (S. cerevisiae)
NUP85 nucleoporin 85kDa
NYNRIN NYN domain and retroviral integrase containing
OGFOD3 2-oxoglutarate and iron-dependent oxygenase domain containing 3
OPA3 optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
OR1B1 olfactory receptor, family 1, subfamily B, member 1 (gene/pseudogene)
OR52B2 olfactory receptor, family 52, subfamily B, member 2
OR9Q1 olfactory receptor, family 9, subfamily Q, member 1
OR9Q2 olfactory receptor, family 9, subfamily Q, member 2
OSBPL7 oxysterol binding protein-like 7
PANK4 pantothenate kinase 4
PCDHGB2 protocadherin gamma subfamily B, 2
PCGF2 polycomb group ring finger 2
PCSK6 proprotein convertase subtilisin/kexin type 6
PDE6C phosphodiesterase 6C, cGMP-specific, cone, alpha prime
PDGFC platelet derived growth factor C
PGA4 pepsinogen 4, group I (pepsinogen A)
PGS1 phosphatidylglycerophosphate synthase 1
PI4KAP2 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2
PLA2G7 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
PLCB3 phospholipase C, beta 3 (phosphatidylinositol-specific)
PLEKHH3 pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
PLEKHM1 pleckstrin homology domain containing, family M (with RUN domain) member 1
POLD1 polymerase (DNA directed), delta 1, catalytic subunit
POLG2 polymerase (DNA directed), gamma 2, accessory subunit
POTEB POTE ankyrin domain family, member B
POU5F2 POU domain class 5, transcription factor 2
PRAMEF11 PRAME family member 11
PRDM9 PR domain containing 9
PSMD3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
PTPRVP protein tyrosine phosphatase, receptor type, V, pseudogene
PYCR1 pyrroline-5-carboxylate reductase 1
RAD51D RAD51 paralog D
RAD52 RAD52 homolog (S. cerevisiae)
RAF1 Raf-1 proto-oncogene, serine/threonine kinase
RBM14 RNA binding motif protein 14
RBM5 RNA binding motif protein 5
RECQL5 RecQ protein-like 5
REM1 RAS (RAD and GEM)-like GTP-binding 1
RFNG RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1
RPTOR regulatory associated protein of MTOR, complex 1
SAXO2 stabilizer of axonemal microtubules 2
SETD5 SET domain containing 5
SHISA7 shisa family member 7
SIRT7 sirtuin 7
SLC26A11 solute carrier family 26 (anion exchanger), member 11
SLC38A10 solute carrier family 38, member 10
SMPD4 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)
SNAPC4 small nuclear RNA activating complex, polypeptide 4, 190kDa
SNHG1 small nucleolar RNA host gene 1
SNORA70 small nucleolar RNA, H/ACA box 70
SNORD1C small nucleolar RNA, C/D box 1C
SNRNP70 small nuclear ribonucleoprotein 70kDa (U1)
SOCS6 suppressor of cytokine signaling 6
SOX30 SRY (sex determining region Y)-box 30
SPDYE4 speedy/RINGO cell cycle regulator family member E4
SPOP speckle-type POZ protein
SRSF2 serine/arginine-rich splicing factor 2
STRADA STE20-related kinase adaptor alpha
SUMO2 small ubiquitin-like modifier 2
SUV420H2 suppressor of variegation 4-20 homolog 2 (Drosophila)
SYMPK symplekin
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
TAS2R20 taste receptor, type 2, member 20
TAS2R5 taste receptor, type 2, member 5
TAS2R8 taste receptor, type 2, member 8
TBC1D3 TBC1 domain family, member 3
TBC1D3C TBC1 domain family, member 3C
TBC1D3H TBC1 domain family, member 3H
TBCD tubulin folding cofactor D
TBKBP1 TBK1 binding protein 1
TCEB3C transcription elongation factor B polypeptide 3C (elongin A3)
TGFBI transforming growth factor, beta-induced, 68kDa
TLK2 tousled-like kinase 2
TMCO6 transmembrane and coiled-coil domains 6
TMEFF2 transmembrane protein with EGF-like and two follistatin-like domains 2
TMEM14E transmembrane protein 14E
TMEM86B transmembrane protein 86B
TMUB2 transmembrane and ubiquitin-like domain containing 2
TNFSF18 tumor necrosis factor (ligand) superfamily, member 18
TSEN54 TSEN54 tRNA splicing endonuclease subunit
TTLL3 tubulin tyrosine ligase-like family member 3
UBE2O ubiquitin-conjugating enzyme E2O
UNK unkempt family zinc finger
UPK1A uroplakin 1A
USP35 ubiquitin specific peptidase 35
USP36 ubiquitin specific peptidase 36
WDR45B WD repeat domain 45B
ZBTB3 zinc finger and BTB domain containing 3
ZDHHC8 zinc finger, DHHC-type containing 8
ZFYVE16 zinc finger, FYVE domain containing 16
ZIC3 Zic family member 3
ZNF132 zinc finger protein 132
ZNF324B zinc finger protein 324B
ZNF497 zinc finger protein 497
ZNF512B zinc finger protein 512B
ZNF543 zinc finger protein 543
ZNF586 zinc finger protein 586
ZNF77 zinc finger protein 77
ZNF781 zinc finger protein 781
ZNF784 zinc finger protein 784
ZNF830 zinc finger protein 830
ZNF837 zinc finger protein 837

low expression

Symbol Name
NIPSNAP1 nipsnap homolog 1 (C. elegans)