Brain Lower Grade Glioma_LGG_TCGA-TM-A84T-01A-11R-A36H-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

296 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-TM-A84T-01A-11R-A36H-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
A1CF APOBEC1 complementation factor
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase
ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
ACAP3 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
ACVR2B activin A receptor, type IIB
ADAM7 ADAM metallopeptidase domain 7
ADGRG6 adhesion G protein-coupled receptor G6
ALCAM activated leukocyte cell adhesion molecule
ANKRD13A ankyrin repeat domain 13A
ANKRD30A ankyrin repeat domain 30A
ANP32A-IT1 ANP32A intronic transcript 1
ARGLU1 arginine and glutamate rich 1
ARHGEF7 Rho guanine nucleotide exchange factor (GEF) 7
ASCL3 achaete-scute family bHLH transcription factor 3
ASXL3 additional sex combs like transcriptional regulator 3
ATXN3 ataxin 3
ATXN7L2 ataxin 7-like 2
BIVM basic, immunoglobulin-like variable motif containing
BLID BH3-like motif containing, cell death inducer
BOP1 block of proliferation 1
BRD7P3 bromodomain containing 7 pseudogene 3
C17ORF78 chromosome 17 open reading frame 78
C20ORF144 chromosome 20 open reading frame 144
C20ORF173 chromosome 20 open reading frame 173
C20ORF203 chromosome 20 open reading frame 203
C22ORF23 chromosome 22 open reading frame 23
C9ORF131 chromosome 9 open reading frame 131
C9ORF84 chromosome 9 open reading frame 84
CACNA2D4 calcium channel, voltage-dependent, alpha 2/delta subunit 4
CASC3 cancer susceptibility candidate 3
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family)
CCDC183 coiled-coil domain containing 183
CCDC27 coiled-coil domain containing 27
CDC16 cell division cycle 16
CDR1 cerebellar degeneration-related protein 1, 34kDa
CDV3 CDV3 homolog (mouse)
CECR2 cat eye syndrome chromosome region, candidate 2
CEP83 centrosomal protein 83kDa
CHAMP1 chromosome alignment maintaining phosphoprotein 1
CHD7 chromodomain helicase DNA binding protein 7
CHRNG cholinergic receptor, nicotinic, gamma (muscle)
CIZ1 CDKN1A interacting zinc finger protein 1
CNKSR1 connector enhancer of kinase suppressor of Ras 1
COL20A1 collagen, type XX, alpha 1
CSNK1E casein kinase 1, epsilon
CTU1 cytosolic thiouridylase subunit 1
CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2
CYP27C1 cytochrome P450, family 27, subfamily C, polypeptide 1
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6
DCUN1D2 DCN1, defective in cullin neddylation 1, domain containing 2
DDX26B DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
DGAT1 diacylglycerol O-acyltransferase 1
DIO3OS DIO3 opposite strand/antisense RNA (head to head)
DLGAP1 discs, large (Drosophila) homolog-associated protein 1
DLL1 delta-like 1 (Drosophila)
DLL3 delta-like 3 (Drosophila)
DOLPP1 dolichyldiphosphatase 1
DPPA3 developmental pluripotency associated 3
DPRX divergent-paired related homeobox
DUSP27 dual specificity phosphatase 27 (putative)
DZIP1 DAZ interacting zinc finger protein 1
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3
EEF2 eukaryotic translation elongation factor 2
EFNA2 ephrin-A2
EHMT1 euchromatic histone-lysine N-methyltransferase 1
EIF3E eukaryotic translation initiation factor 3, subunit E
EIF3H eukaryotic translation initiation factor 3, subunit H
EIF4B eukaryotic translation initiation factor 4B
EPGN epithelial mitogen
ERC2-IT1 ERC2 intronic transcript 1
ERCC5 excision repair cross-complementation group 5
ETV1 ets variant 1
EVPLL envoplakin-like
FAM157A family with sequence similarity 157, member A
FAM212B family with sequence similarity 212, member B
FAM69B family with sequence similarity 69, member B
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
FDPSP2 farnesyl diphosphate synthase pseudogene 2
FKSG29 FKSG29
FOXP2 forkhead box P2
FRAT2 frequently rearranged in advanced T-cell lymphomas 2
FTX FTX transcript, XIST regulator (non-protein coding)
GAB2 GRB2-associated binding protein 2
GAPVD1 GTPase activating protein and VPS9 domains 1
GCM2 glial cells missing homolog 2 (Drosophila)
GCNT7 glucosaminyl (N-acetyl) transferase family member 7
GLTPD2 glycolipid transfer protein domain containing 2
GLTSCR2 glioma tumor suppressor candidate region gene 2
GOLGA6D golgin A6 family, member D
GP1BA glycoprotein Ib (platelet), alpha polypeptide
GPSM1 G-protein signaling modulator 1
GREB1 growth regulation by estrogen in breast cancer 1
GSC2 goosecoid homeobox 2
GUSBP1 glucuronidase, beta pseudogene 1
GUSBP4 glucuronidase, beta pseudogene 4
HIC2 hypermethylated in cancer 2
HIP1 huntingtin interacting protein 1
HIST1H4E histone cluster 1, H4e
HIST2H2AB histone cluster 2, H2ab
HIST3H2A histone cluster 3, H2a
HMGB4 high mobility group box 4
HPYR1 Helicobacter pylori responsive 1 (non-protein coding)
IFNK interferon, kappa
IGLL3P immunoglobulin lambda-like polypeptide 3, pseudogene
IL31 interleukin 31
IL4 interleukin 4
ING5 inhibitor of growth family, member 5
IPO5 importin 5
ITPK1-AS1 ITPK1 antisense RNA 1
JRK Jrk homolog (mouse)
KCNQ1OT1 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
KCNV2 potassium channel, voltage gated modifier subfamily V, member 2
KRT39 keratin 39, type I
LCORL ligand dependent nuclear receptor corepressor-like
LHCGR luteinizing hormone/choriogonadotropin receptor
LINC00051 long intergenic non-protein coding RNA 51
LINC00597 long intergenic non-protein coding RNA 597
LOC100133050 glucuronidase, beta pseudogene
LOC100190986 uncharacterized LOC100190986
LOC148696 uncharacterized LOC148696
LOC284837
LOC285692 uncharacterized LOC285692
LOC392196 ubiquitin specific peptidase 17-like family member 2 pseudogene
LOC441666 zinc finger protein 91 pseudogene
LRRC47 leucine rich repeat containing 47
LRSAM1 leucine rich repeat and sterile alpha motif containing 1
LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4
MDFI MyoD family inhibitor
MED22 mediator complex subunit 22
MICALL1 MICAL-like 1
MIR17HG miR-17-92 cluster host gene
MTA1 metastasis associated 1
MTF2 metal response element binding transcription factor 2
MYF5 myogenic factor 5
NCOR2 nuclear receptor corepressor 2
NEU4 sialidase 4
NLE1 notchless homolog 1 (Drosophila)
NMB neuromedin B
NOTCH1 notch 1
NPHP4 nephronophthisis 4
NR6A1 nuclear receptor subfamily 6, group A, member 1
ODF3 outer dense fiber of sperm tails 3
OLIG1 oligodendrocyte transcription factor 1
OLIG2 oligodendrocyte lineage transcription factor 2
OR13C9 olfactory receptor, family 13, subfamily C, member 9
OR1D4 olfactory receptor, family 1, subfamily D, member 4 (gene/pseudogene)
OR1K1 olfactory receptor, family 1, subfamily K, member 1
OR2B2 olfactory receptor, family 2, subfamily B, member 2
OR2D2 olfactory receptor, family 2, subfamily D, member 2
OR2M1P olfactory receptor, family 2, subfamily M, member 1 pseudogene
OR51B2 olfactory receptor, family 51, subfamily B, member 2 (gene/pseudogene)
OR51M1 olfactory receptor, family 51, subfamily M, member 1
OR8S1 olfactory receptor, family 8, subfamily S, member 1
PABPC1 poly(A) binding protein, cytoplasmic 1
PABPC3 poly(A) binding protein, cytoplasmic 3
PANK4 pantothenate kinase 4
PBOV1 prostate and breast cancer overexpressed 1
PCCA propionyl CoA carboxylase, alpha polypeptide
PCDH15 protocadherin-related 15
PCDHA10 protocadherin alpha 10
PCDHGA5 protocadherin gamma subfamily A, 5
PCDHGA8 protocadherin gamma subfamily A, 8
PCDHGB4 protocadherin gamma subfamily B, 4
PCID2 PCI domain containing 2
PHF20L1 PHD finger protein 20-like 1
PHF21B PHD finger protein 21B
PI4KAP1 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1
PLAC8L1 PLAC8-like 1
PLEKHG3 pleckstrin homology domain containing, family G (with RhoGef domain) member 3
POU5F2 POU domain class 5, transcription factor 2
PPP1R26 protein phosphatase 1, regulatory subunit 26
PPP6C protein phosphatase 6, catalytic subunit
PPY2P pancreatic polypeptide 2, pseudogene
PRO0611 PRO0611 protein
PRO0628 uncharacterized LOC29053
PRR26 proline rich 26
PRRC2B proline-rich coiled-coil 2B
PRSS58 protease, serine, 58
PSAPL1 prosaposin-like 1 (gene/pseudogene)
PTPRS protein tyrosine phosphatase, receptor type, S
PTX4 pentraxin 4, long
QSOX2 quiescin Q6 sulfhydryl oxidase 2
RAP2A RAP2A, member of RAS oncogene family
RBM44 RNA binding motif protein 44
RBMXL2 RNA binding motif protein, X-linked-like 2
RBMXL3 RNA binding motif protein, X-linked-like 3
RCOR2 REST corepressor 2
REXO4 REX4, RNA exonuclease 4 homolog (S. cerevisiae)
RMRP RNA component of mitochondrial RNA processing endoribonuclease
RNF113B ring finger protein 113B
RNF183 ring finger protein 183
RPL10 ribosomal protein L10
RPL10A ribosomal protein L10a
RPL11 ribosomal protein L11
RPL13AP17 ribosomal protein L13a pseudogene 17
RPL13AP6 ribosomal protein L13a pseudogene 6
RPL18 ribosomal protein L18
RPL22 ribosomal protein L22
RPL3 ribosomal protein L3
RPL5 ribosomal protein L5
RPL6 ribosomal protein L6
RPL7A ribosomal protein L7a
RPRM reprimo, TP53 dependent G2 arrest mediator candidate
RPS11 ribosomal protein S11
RPS16 ribosomal protein S16
RPS23 ribosomal protein S23
RPS26 ribosomal protein S26
RPS9 ribosomal protein S9
RUNX1-IT1 RUNX1 intronic transcript 1
SCARNA17 small Cajal body-specific RNA 17
SCARNA2 small Cajal body-specific RNA 2
SCARNA7 small Cajal body-specific RNA 7
SCARNA9 small Cajal body-specific RNA 9
SCRIB scribbled planar cell polarity protein
SET SET nuclear proto-oncogene
SETD5 SET domain containing 5
SIGLEC11 sialic acid binding Ig-like lectin 11
SIX4 SIX homeobox 4
SLC10A1 solute carrier family 10 (sodium/bile acid cotransporter), member 1
SLC22A13 solute carrier family 22 (organic anion/urate transporter), member 13
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36
SLC35E2 solute carrier family 35, member E2
SLC7A5P2 solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2
SLCO1B3 solute carrier organic anion transporter family, member 1B3
SNAPC4 small nuclear RNA activating complex, polypeptide 4, 190kDa
SNAR-B2 small ILF3/NF90-associated RNA B2
SNHG7 small nucleolar RNA host gene 7
SNORA21 small nucleolar RNA, H/ACA box 21
SNORA25 small nucleolar RNA, H/ACA box 25
SNORA44 small nucleolar RNA, H/ACA box 44
SNORA47 small nucleolar RNA, H/ACA box 47
SNORA59B small nucleolar RNA, H/ACA box 59B
SNX31 sorting nexin 31
SOX21 SRY (sex determining region Y)-box 21
SOX4 SRY (sex determining region Y)-box 4
SPDYE2 speedy/RINGO cell cycle regulator family member E2
SPHKAP SPHK1 interactor, AKAP domain containing
SSTR5 somatostatin receptor 5
STKLD1 serine/threonine kinase-like domain containing 1
SYCP2L synaptonemal complex protein 2-like
TAS2R3 taste receptor, type 2, member 3
TAS2R30 taste receptor, type 2, member 30
TAS2R9 taste receptor, type 2, member 9
TBC1D3F TBC1 domain family, member 3F
TCEANC2 transcription elongation factor A (SII) N-terminal and central domain containing 2
TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box)
TDRP testis development related protein
TERC telomerase RNA component
TEX30 testis expressed 30
TIA1 TIA1 cytotoxic granule-associated RNA binding protein
TIMM50 translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)
TMEM121 transmembrane protein 121
TMEM89 transmembrane protein 89
TNRC6C trinucleotide repeat containing 6C
TOP1P2 topoisomerase (DNA) I pseudogene 2
TOR2A torsin family 2, member A
TP73 tumor protein p73
TPP2 tripeptidyl peptidase II
TPRX1 tetra-peptide repeat homeobox 1
TRAPPC12 trafficking protein particle complex 12
TRIM40 tripartite motif containing 40
TRIM60 tripartite motif containing 60
TSHB thyroid stimulating hormone, beta
TSSK1B testis-specific serine kinase 1B
TUBGCP3 tubulin, gamma complex associated protein 3
UBR5 ubiquitin protein ligase E3 component n-recognin 5
UGGT2 UDP-glucose glycoprotein glucosyltransferase 2
UPF3A UPF3 regulator of nonsense transcripts homolog A (yeast)
USP20 ubiquitin specific peptidase 20
USP50 ubiquitin specific peptidase 50
WDR5 WD repeat domain 5
WNT5A wingless-type MMTV integration site family, member 5A
WRAP73 WD repeat containing, antisense to TP73
XAGE3 X antigen family, member 3
ZBTB12 zinc finger and BTB domain containing 12
ZBTB20 zinc finger and BTB domain containing 20
ZBTB34 zinc finger and BTB domain containing 34
ZBTB39 zinc finger and BTB domain containing 39
ZFP14 ZFP14 zinc finger protein
ZFP30 ZFP30 zinc finger protein
ZFYVE16 zinc finger, FYVE domain containing 16
ZNF222 zinc finger protein 222
ZNF250 zinc finger protein 250
ZNF251 zinc finger protein 251
ZNF34 zinc finger protein 34
ZNF518A zinc finger protein 518A
ZNF566 zinc finger protein 566
ZNF696 zinc finger protein 696
ZNF707 zinc finger protein 707
ZNF781 zinc finger protein 781
ZNF793 zinc finger protein 793
ZNF841 zinc finger protein 841

low expression

Symbol Name
ATG10 autophagy related 10
FNDC8 fibronectin type III domain containing 8