Brain Lower Grade Glioma_LGG_TCGA-TM-A7CA-01A-21R-A33Z-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

391 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-TM-A7CA-01A-21R-A33Z-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
AADAT aminoadipate aminotransferase
ACAP3 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
ACER1 alkaline ceramidase 1
ACSM2A acyl-CoA synthetase medium-chain family member 2A
ACSM6 acyl-CoA synthetase medium-chain family member 6
ACTBL2 actin, beta-like 2
ACTL7B actin-like 7B
ACTR3BP2 ACTR3B pseudogene 2
ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif, 10
AGO4 argonaute RISC catalytic component 4
AKAP7 A kinase (PRKA) anchor protein 7
ALCAM activated leukocyte cell adhesion molecule
ANKRD50 ankyrin repeat domain 50
ANP32A-IT1 ANP32A intronic transcript 1
ANXA9 annexin A9
APLF aprataxin and PNKP like factor
APOBEC2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2
ARPP21 cAMP-regulated phosphoprotein, 21kDa
ASB18 ankyrin repeat and SOCS box containing 18
ASIC1 acid sensing (proton gated) ion channel 1
ASIC3 acid sensing (proton gated) ion channel 3
B3GNT6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6
BEND7 BEN domain containing 7
BIVM basic, immunoglobulin-like variable motif containing
BPIFA3 BPI fold containing family A, member 3
BRD7 bromodomain containing 7
BRINP2 bone morphogenetic protein/retinoic acid inducible neural-specific 2
BTBD18 BTB (POZ) domain containing 18
C17ORF78 chromosome 17 open reading frame 78
C1ORF186 chromosome 1 open reading frame 186
C1ORF21 chromosome 1 open reading frame 21
C4ORF45 chromosome 4 open reading frame 45
C7ORF34 chromosome 7 open reading frame 34
C9ORF131 chromosome 9 open reading frame 131
C9ORF152 chromosome 9 open reading frame 152
C9ORF172 chromosome 9 open reading frame 172
C9ORF57 chromosome 9 open reading frame 57
C9ORF84 chromosome 9 open reading frame 84
CALML6 calmodulin-like 6
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family)
CASP9 caspase 9, apoptosis-related cysteine peptidase
CCDC183 coiled-coil domain containing 183
CCSER2 coiled-coil serine-rich protein 2
CCT8L2 chaperonin containing TCP1, subunit 8 (theta)-like 2
CDCP2 CUB domain containing protein 2
CDH10 cadherin 10, type 2 (T2-cadherin)
CDH16 cadherin 16, KSP-cadherin
CDR1 cerebellar degeneration-related protein 1, 34kDa
CDY1B chromodomain protein, Y-linked, 1B
CEACAM20 carcinoembryonic antigen-related cell adhesion molecule 20
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3
CHD7 chromodomain helicase DNA binding protein 7
CLDN9 claudin 9
COPG2 coatomer protein complex, subunit gamma 2
CRIPAK cysteine-rich PAK1 inhibitor
CRYGA crystallin, gamma A
CSNK1G2-AS1 CSNK1G2 antisense RNA 1
CT55 cancer/testis antigen 55
CTTNBP2 cortactin binding protein 2
CYP2A7 cytochrome P450, family 2, subfamily A, polypeptide 7
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6
CYP2D7 cytochrome P450, family 2, subfamily D, polypeptide 7 (gene/pseudogene)
DACH2 dachshund family transcription factor 2
DCAF17 DDB1 and CUL4 associated factor 17
DEFB103B defensin, beta 103B
DEFB118 defensin, beta 118
DEFB132 defensin, beta 132
DGCR10 DiGeorge syndrome critical region gene 10 (non-protein coding)
DGCR9 DiGeorge syndrome critical region gene 9 (non-protein coding)
DHRS7C dehydrogenase/reductase (SDR family) member 7C
DISC2 disrupted in schizophrenia 2 (non-protein coding)
DLL3 delta-like 3 (Drosophila)
DMTF1 cyclin D binding myb-like transcription factor 1
DOPEY1 dopey family member 1
DPPA5 developmental pluripotency associated 5
DPRX divergent-paired related homeobox
DUSP5P1 dual specificity phosphatase 5 pseudogene 1
DYNLL2 dynein, light chain, LC8-type 2
DYRK1B dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
EDDM3B epididymal protein 3B
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3
EHBP1L1 EH domain binding protein 1-like 1
ELFN2 extracellular leucine-rich repeat and fibronectin type III domain containing 2
ERC2-IT1 ERC2 intronic transcript 1
ERVFRD-1 endogenous retrovirus group FRD, member 1
EXOC2 exocyst complex component 2
EYS eyes shut homolog (Drosophila)
FAM110B family with sequence similarity 110, member B
FAM205A family with sequence similarity 205, member A
FAM221B family with sequence similarity 221, member B
FAM66A family with sequence similarity 66, member A
FAM71C family with sequence similarity 71, member C
FBXW12 F-box and WD repeat domain containing 12
FDPSP2 farnesyl diphosphate synthase pseudogene 2
FGD1 FYVE, RhoGEF and PH domain containing 1
FGF23 fibroblast growth factor 23
FKBP1AP1 FK506 binding protein 1A, 12kDa pseudogene 1
FKBP6 FK506 binding protein 6, 36kDa
FLJ42393 uncharacterized LOC401105
FOXP2 forkhead box P2
FOXR1 forkhead box R1
FSCB fibrous sheath CABYR binding protein
FUT6 fucosyltransferase 6 (alpha (1,3) fucosyltransferase)
FXYD2 FXYD domain containing ion transport regulator 2
GATS GATS, stromal antigen 3 opposite strand
GATSL2 GATS protein-like 2
GIPR gastric inhibitory polypeptide receptor
GLTSCR1 glioma tumor suppressor candidate region gene 1
GPR148 G protein-coupled receptor 148
GPR27 G protein-coupled receptor 27
GPR45 G protein-coupled receptor 45
GRIA2 glutamate receptor, ionotropic, AMPA 2
GRIK3 glutamate receptor, ionotropic, kainate 3
GRK4 G protein-coupled receptor kinase 4
GRXCR1 glutaredoxin, cysteine rich 1
GSC2 goosecoid homeobox 2
GSE1 Gse1 coiled-coil protein
GTSF1L gametocyte specific factor 1-like
GUCY2EP guanylate cyclase 2E, pseudogene
H2BFXP H2B histone family, member X, pseudogene
HAVCR1 hepatitis A virus cellular receptor 1
HHLA1 HERV-H LTR-associating 1
HIATL2 hippocampus abundant transcript-like 2
HIST1H1E histone cluster 1, H1e
HIST1H4A histone cluster 1, H4a
HIST1H4E histone cluster 1, H4e
HIST1H4F histone cluster 1, H4f
HNF1B HNF1 homeobox B
HSD17B7P2 hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2
HSP90AB4P heat shock protein 90kDa alpha (cytosolic), class B member 4, pseudogene
ICA1L islet cell autoantigen 1,69kDa-like
IGFBPL1 insulin-like growth factor binding protein-like 1
IL4 interleukin 4
INGX inhibitor of growth family, X-linked, pseudogene
IPO5 importin 5
IRGC immunity-related GTPase family, cinema
IRGQ immunity-related GTPase family, Q
ITPK1-AS1 ITPK1 antisense RNA 1
KCND2 potassium channel, voltage gated Shal related subfamily D, member 2
KCNV2 potassium channel, voltage gated modifier subfamily V, member 2
KDM4B lysine (K)-specific demethylase 4B
KDM4E lysine (K)-specific demethylase 4E
KIAA0087 KIAA0087
KIF2A kinesin heavy chain member 2A
KLHL13 kelch-like family member 13
KLRC2 killer cell lectin-like receptor subfamily C, member 2
KRTAP10-7 keratin associated protein 10-7
KRTAP12-1 keratin associated protein 12-1
KRTAP26-1 keratin associated protein 26-1
KRTAP5-11 keratin associated protein 5-11
LCE6A late cornified envelope 6A
LINC00596 long intergenic non-protein coding RNA 596
LMTK3 lemur tyrosine kinase 3
LOC100130987 uncharacterized LOC100130987
LOC100240734 uncharacterized LOC100240734
LOC148696 uncharacterized LOC148696
LOC340357 uncharacterized LOC340357
LOC392196 ubiquitin specific peptidase 17-like family member 2 pseudogene
LOC400794 uncharacterized LOC400794
LOC440461 Rho GTPase activating protein 27 pseudogene
LOC441204 uncharacterized LOC441204
LOC729609 uncharacterized LOC729609
LPPR3 lipid phosphate phosphatase-related protein type 3
LPPR5 lipid phosphate phosphatase-related protein type 5
LRIT2 leucine-rich repeat, immunoglobulin-like and transmembrane domains 2
LRRC37BP1 leucine rich repeat containing 37B pseudogene 1
LRRC4B leucine rich repeat containing 4B
LRRIQ4 leucine-rich repeats and IQ motif containing 4
LY6G6E lymphocyte antigen 6 complex, locus G6E (pseudogene)
MAGEA5 melanoma antigen family A5
MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
MAST2 microtubule associated serine/threonine kinase 2
MB21D2 Mab-21 domain containing 2
MBIP MAP3K12 binding inhibitory protein 1
MEIS3 Meis homeobox 3
MIMT1 MER1 repeat containing imprinted transcript 1 (non-protein coding)
MKRN3 makorin ring finger protein 3
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
MMP23B matrix metallopeptidase 23B
MPPED2 metallophosphoesterase domain containing 2
MS4A10 membrane-spanning 4-domains, subfamily A, member 10
MST1R macrophage stimulating 1 receptor
MTMR1 myotubularin related protein 1
MTPAP mitochondrial poly(A) polymerase
NAT8 N-acetyltransferase 8 (GCN5-related, putative)
NCOR2 nuclear receptor corepressor 2
NDST4 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4
NEURL1B neuralized E3 ubiquitin protein ligase 1B
NEUROD4 neuronal differentiation 4
NF2 neurofibromin 2 (merlin)
NKD1 naked cuticle homolog 1 (Drosophila)
NLRP10 NLR family, pyrin domain containing 10
NLRP5 NLR family, pyrin domain containing 5
NMB neuromedin B
NOD2 nucleotide-binding oligomerization domain containing 2
NOMO1 NODAL modulator 1
NOVA2 neuro-oncological ventral antigen 2
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NTNG2 netrin G2
NUTM2G NUT family member 2G
NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2
OCM2 oncomodulin 2
OLIG1 oligodendrocyte transcription factor 1
OLIG2 oligodendrocyte lineage transcription factor 2
OPN1LW opsin 1 (cone pigments), long-wave-sensitive
OR10A2 olfactory receptor, family 10, subfamily A, member 2
OR10G4 olfactory receptor, family 10, subfamily G, member 4
OR10Z1 olfactory receptor, family 10, subfamily Z, member 1
OR1J4 olfactory receptor, family 1, subfamily J, member 4
OR1K1 olfactory receptor, family 1, subfamily K, member 1
OR2B3 olfactory receptor, family 2, subfamily B, member 3
OR2G3 olfactory receptor, family 2, subfamily G, member 3
OR2M5 olfactory receptor, family 2, subfamily M, member 5
OR2T10 olfactory receptor, family 2, subfamily T, member 10
OR2T11 olfactory receptor, family 2, subfamily T, member 11 (gene/pseudogene)
OR3A4P olfactory receptor, family 3, subfamily A, member 4 pseudogene
OR4F17 olfactory receptor, family 4, subfamily F, member 17
OR4F5 olfactory receptor, family 4, subfamily F, member 5
OR51Q1 olfactory receptor, family 51, subfamily Q, member 1 (gene/pseudogene)
OR52E6 olfactory receptor, family 52, subfamily E, member 6
OR52I1 olfactory receptor, family 52, subfamily I, member 1
OR52W1 olfactory receptor, family 52, subfamily W, member 1
OR5B3 olfactory receptor, family 5, subfamily B, member 3
OR5C1 olfactory receptor, family 5, subfamily C, member 1
OR6C75 olfactory receptor, family 6, subfamily C, member 75
OR6M1 olfactory receptor, family 6, subfamily M, member 1
OXT oxytocin/neurophysin I prepropeptide
PATE1 prostate and testis expressed 1
PBOV1 prostate and breast cancer overexpressed 1
PCA3 prostate cancer associated 3 (non-protein coding)
PCDH15 protocadherin-related 15
PCDHA6 protocadherin alpha 6
PCDHGA3 protocadherin gamma subfamily A, 3
PCDHGA6 protocadherin gamma subfamily A, 6
PDC phosducin
PFN2 profilin 2
PI4KAP1 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1
PIGR polymeric immunoglobulin receptor
POF1B premature ovarian failure, 1B
POM121L10P POM121 transmembrane nucleoporin-like 10, pseudogene
POU2F1 POU class 2 homeobox 1
POU5F1B POU class 5 homeobox 1B
PPP1R12A protein phosphatase 1, regulatory subunit 12A
PPP1R14D protein phosphatase 1, regulatory (inhibitor) subunit 14D
PPP1R2P9 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9
PPP1R9A protein phosphatase 1, regulatory subunit 9A
PRAMEF14 PRAME family member 14
PRDM15 PR domain containing 15
PRH2 proline-rich protein HaeIII subfamily 2
PRKG2 protein kinase, cGMP-dependent, type II
PRO0611 PRO0611 protein
PROL1 proline rich, lacrimal 1
PRR12 proline rich 12
PRR23C proline rich 23C
PRR26 proline rich 26
PSAPL1 prosaposin-like 1 (gene/pseudogene)
PTCHD2 patched domain containing 2
PTPRS protein tyrosine phosphatase, receptor type, S
PVRL1 poliovirus receptor-related 1 (herpesvirus entry mediator C)
PWAR5 Prader Willi/Angelman region RNA 5
RAB2A RAB2A, member RAS oncogene family
RAX2 retina and anterior neural fold homeobox 2
RBMXL3 RNA binding motif protein, X-linked-like 3
REPIN1 replication initiator 1
REXO1L1P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene
RGAG1 retrotransposon gag domain containing 1
RGPD1 RANBP2-like and GRIP domain containing 1
RHOXF1 Rhox homeobox family, member 1
RNF113B ring finger protein 113B
RNF217-AS1 RNF217 antisense RNA 1 (head to head)
RNF222 ring finger protein 222
RNF39 ring finger protein 39
RPL10L ribosomal protein L10-like
RPRM reprimo, TP53 dependent G2 arrest mediator candidate
RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
RWDD2A RWD domain containing 2A
S100G S100 calcium binding protein G
SAMD14 sterile alpha motif domain containing 14
SCARNA17 small Cajal body-specific RNA 17
SCARNA7 small Cajal body-specific RNA 7
SCARNA9 small Cajal body-specific RNA 9
SCARNA9L small Cajal body-specific RNA 9-like
SCML2 sex comb on midleg-like 2 (Drosophila)
SEMA3D sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
SEMA5B sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
SEPT7P9 septin 7 pseudogene 9
SERAC1 serine active site containing 1
SEZ6 seizure related 6 homolog (mouse)
SFTPA1 surfactant protein A1
SGSM2 small G protein signaling modulator 2
SHD Src homology 2 domain containing transforming protein D
SLC13A1 solute carrier family 13 (sodium/sulfate symporter), member 1
SLC17A3 solute carrier family 17 (organic anion transporter), member 3
SLC22A13 solute carrier family 22 (organic anion/urate transporter), member 13
SLC22A7 solute carrier family 22 (organic anion transporter), member 7
SLC34A3 solute carrier family 34 (type II sodium/phosphate cotransporter), member 3
SLC35E2 solute carrier family 35, member E2
SLC36A3 solute carrier family 36, member 3
SLC37A3 solute carrier family 37, member 3
SLC44A4 solute carrier family 44, member 4
SLC7A5P1 solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1
SLC7A5P2 solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2
SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
SMR3A submaxillary gland androgen regulated protein 3A
SND1-IT1 SND1 intronic transcript 1
SNORA11 small nucleolar RNA, H/ACA box 11
SNORA29 small nucleolar RNA, H/ACA box 29
SNORA55 small nucleolar RNA, H/ACA box 55
SNORA77 small nucleolar RNA, H/ACA box 77
SNORA81 small nucleolar RNA, H/ACA box 81
SNX20 sorting nexin 20
SOBP sine oculis binding protein homolog (Drosophila)
SPATA21 spermatogenesis associated 21
SPATA31E1 SPATA31 subfamily E, member 1
SPEN spen family transcriptional repressor
SPRR2C small proline-rich protein 2C (pseudogene)
SSPO SCO-spondin
SSTR1 somatostatin receptor 1
SSTR5 somatostatin receptor 5
STH saitohin
STRIP1 striatin interacting protein 1
SUZ12P1 suppressor of zeste 12 homolog pseudogene 1
SZT2 seizure threshold 2 homolog (mouse)
TAS2R30 taste receptor, type 2, member 30
TAS2R40 taste receptor, type 2, member 40
TAS2R42 taste receptor, type 2, member 42
TAS2R46 taste receptor, type 2, member 46
TAS2R50 taste receptor, type 2, member 50
TBC1D26 TBC1 domain family, member 26
TBC1D3H TBC1 domain family, member 3H
TCAF1 TRPM8 channel-associated factor 1
TCEB3C transcription elongation factor B polypeptide 3C (elongin A3)
TDRD12 tudor domain containing 12
TECRL trans-2,3-enoyl-CoA reductase-like
TET2 tet methylcytosine dioxygenase 2
TINAG tubulointerstitial nephritis antigen
TKTL2 transketolase-like 2
TLE3 transducin-like enhancer of split 3
TMCC1 transmembrane and coiled-coil domain family 1
TMCO2 transmembrane and coiled-coil domains 2
TMEM243 transmembrane protein 243, mitochondrial
TMEM252 transmembrane protein 252
TMEM82 transmembrane protein 82
TNRC6B trinucleotide repeat containing 6B
TPH1 tryptophan hydroxylase 1
TPTEP1 transmembrane phosphatase with tensin homology pseudogene 1
TRERF1 transcriptional regulating factor 1
TRIM15 tripartite motif containing 15
TRIM40 tripartite motif containing 40
TSSK3 testis-specific serine kinase 3
TTC36 tetratricopeptide repeat domain 36
TTLL8 tubulin tyrosine ligase-like family member 8
TTTY10 testis-specific transcript, Y-linked 10 (non-protein coding)
UBE2Q2P1 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 1
UBN2 ubinuclein 2
UBQLN3 ubiquilin 3
UCMA upper zone of growth plate and cartilage matrix associated
UGT1A6 UDP glucuronosyltransferase 1 family, polypeptide A6
UGT2A3 UDP glucuronosyltransferase 2 family, polypeptide A3
USP17L2 ubiquitin specific peptidase 17-like family member 2
USP49 ubiquitin specific peptidase 49
VENTXP7 VENT homeobox pseudogene 7
WAC WW domain containing adaptor with coiled-coil
WDR86 WD repeat domain 86
ZACN zinc activated ligand-gated ion channel
ZBTB20 zinc finger and BTB domain containing 20
ZBTB45 zinc finger and BTB domain containing 45
ZBTB46 zinc finger and BTB domain containing 46
ZFP30 ZFP30 zinc finger protein
ZNF154 zinc finger protein 154
ZNF248 zinc finger protein 248
ZNF25 zinc finger protein 25
ZNF264 zinc finger protein 264
ZNF33A zinc finger protein 33A
ZNF37A zinc finger protein 37A
ZNF398 zinc finger protein 398
ZNF440 zinc finger protein 440
ZNF460 zinc finger protein 460
ZNF467 zinc finger protein 467
ZNF579 zinc finger protein 579
ZNF607 zinc finger protein 607
ZNF645 zinc finger protein 645
ZNF780B zinc finger protein 780B
ZNF781 zinc finger protein 781
ZNF8 zinc finger protein 8
ZNF835 zinc finger protein 835

low expression

Symbol Name
ARL1 ADP-ribosylation factor-like 1
CDC26 cell division cycle 26
COPS8 COP9 signalosome subunit 8
IAH1 isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)
NCL nucleolin