Brain Lower Grade Glioma_LGG_TCGA-S9-A7R1-01A-12R-A34R-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

400 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-S9-A7R1-01A-12R-A34R-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase
ACBD3 acyl-CoA binding domain containing 3
ACBD6 acyl-CoA binding domain containing 6
ACTL6B actin-like 6B
ACVR1C activin A receptor, type IC
ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif, 20
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide
ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
AFF3 AF4/FMR2 family, member 3
AHSG alpha-2-HS-glycoprotein
AKAP4 A kinase (PRKA) anchor protein 4
AKAP7 A kinase (PRKA) anchor protein 7
ALG1L ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like
AMTN amelotin
AP3D1 adaptor-related protein complex 3, delta 1 subunit
ARF1 ADP-ribosylation factor 1
ARF5 ADP-ribosylation factor 5
ARHGAP24 Rho GTPase activating protein 24
ARHGAP28 Rho GTPase activating protein 28
ARSH arylsulfatase family, member H
ASIC4 acid sensing (proton gated) ion channel family member 4
ASNSD1 asparagine synthetase domain containing 1
ASTN1 astrotactin 1
ATP6V0E2 ATPase, H+ transporting V0 subunit e2
ATXN3L ataxin 3-like
B4GALT3 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3
BCAN brevican
BEX1 brain expressed, X-linked 1
BHLHA15 basic helix-loop-helix family, member a15
BLOC1S6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
BMP15 bone morphogenetic protein 15
BRINP2 bone morphogenetic protein/retinoic acid inducible neural-specific 2
BTG2 BTG family, member 2
BTNL2 butyrophilin-like 2
C10ORF99 chromosome 10 open reading frame 99
C12ORF74 chromosome 12 open reading frame 74
C1ORF111 chromosome 1 open reading frame 111
C1ORF185 chromosome 1 open reading frame 185
C22ORF31 chromosome 22 open reading frame 31
C22ORF42 chromosome 22 open reading frame 42
C6ORF58 chromosome 6 open reading frame 58
C7ORF60 chromosome 7 open reading frame 60
C7ORF72 chromosome 7 open reading frame 72
CACUL1 CDK2-associated, cullin domain 1
CALB2 calbindin 2
CAMLG calcium modulating ligand
CAMSAP2 calmodulin regulated spectrin-associated protein family, member 2
CAMSAP3 calmodulin regulated spectrin-associated protein family, member 3
CASP2 caspase 2, apoptosis-related cysteine peptidase
CBLL1 Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase
CBLN2 cerebellin 2 precursor
CCDC73 coiled-coil domain containing 73
CCNI cyclin I
CDH9 cadherin 9, type 2 (T1-cadherin)
CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3
CHRDL2 chordin-like 2
CHRNA7 cholinergic receptor, nicotinic, alpha 7 (neuronal)
CIRBP cold inducible RNA binding protein
CNOT4 CCR4-NOT transcription complex, subunit 4
COG5 component of oligomeric golgi complex 5
COPG2 coatomer protein complex, subunit gamma 2
CORO6 coronin 6
CRNN cornulin
CSNK1G2-AS1 CSNK1G2 antisense RNA 1
CST9L cystatin 9-like
CXADRP2 coxsackie virus and adenovirus receptor pseudogene 2
CYP3A7 cytochrome P450, family 3, subfamily A, polypeptide 7
CYP4Z2P cytochrome P450, family 4, subfamily Z, polypeptide 2, pseudogene
DDHD1 DDHD domain containing 1
DDX59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
DEDD death effector domain containing
DEFB109P1 defensin, beta 109, pseudogene 1
DGKK diacylglycerol kinase, kappa
DHX29 DEAH (Asp-Glu-Ala-His) box polypeptide 29
DIO3 deiodinase, iodothyronine, type III
DPP6 dipeptidyl-peptidase 6
DSCR8 Down syndrome critical region 8
EEF2 eukaryotic translation elongation factor 2
EFHB EF-hand domain family, member B
EIF3CL eukaryotic translation initiation factor 3, subunit C-like
EIF3L eukaryotic translation initiation factor 3, subunit L
EIF4B eukaryotic translation initiation factor 4B
ELAVL1 ELAV like RNA binding protein 1
EPB41L4A-AS1 EPB41L4A antisense RNA 1
EPRS glutamyl-prolyl-tRNA synthetase
EPS15L1 epidermal growth factor receptor pathway substrate 15-like 1
EXOC4 exocyst complex component 4
EXOC8 exocyst complex component 8
F9 coagulation factor IX
FAAH2 fatty acid amide hydrolase 2
FABP2 fatty acid binding protein 2, intestinal
FAM106CP family with sequence similarity 106, member C, pseudogene
FAM170B family with sequence similarity 170, member B
FAM177A1 family with sequence similarity 177, member A1
FAM214A family with sequence similarity 214, member A
FARSA phenylalanyl-tRNA synthetase, alpha subunit
FLJ41941 uncharacterized LOC100192420
FLVCR1-AS1 FLVCR1 antisense RNA 1 (head to head)
FMNL3 formin-like 3
FOS FBJ murine osteosarcoma viral oncogene homolog
FOXD4 forkhead box D4
FOXN1 forkhead box N1
FXYD2 FXYD domain containing ion transport regulator 2
G6PC2 glucose-6-phosphatase, catalytic, 2
GALNT11 polypeptide N-acetylgalactosaminyltransferase 11
GAS5 growth arrest-specific 5 (non-protein coding)
GATAD2B GATA zinc finger domain containing 2B
GCC1 GRIP and coiled-coil domain containing 1
GCDH glutaryl-CoA dehydrogenase
GCM2 glial cells missing homolog 2 (Drosophila)
GGTA1P glycoprotein, alpha-galactosyltransferase 1 pseudogene
GIT1 G protein-coupled receptor kinase interacting ArfGAP 1
GJA10 gap junction protein, alpha 10, 62kDa
GLRA1 glycine receptor, alpha 1
GPATCH2 G patch domain containing 2
GPR83 G protein-coupled receptor 83
GPR87 G protein-coupled receptor 87
GPR89A G protein-coupled receptor 89A
GPR89B G protein-coupled receptor 89B
GRHL2 grainyhead-like 2 (Drosophila)
GTF2F1 general transcription factor IIF, polypeptide 1, 74kDa
GTSF1L gametocyte specific factor 1-like
HES6 hes family bHLH transcription factor 6
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1
HSP90AB2P heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene
HYPM huntingtin interacting protein M
IGBP1 immunoglobulin (CD79A) binding protein 1
IGF2BP2-AS1 IGF2BP2 antisense RNA 1
IGFL1 IGF-like family member 1
IL18R1 interleukin 18 receptor 1
IL1RL1 interleukin 1 receptor-like 1
ILF2 interleukin enhancer binding factor 2
IQCF2 IQ motif containing F2
KCNH1 potassium channel, voltage gated eag related subfamily H, member 1
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KCNJ9 potassium channel, inwardly rectifying subfamily J, member 9
KCNMB2 potassium channel subfamily M regulatory beta subunit 2
KCNQ1OT1 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
KIAA0907 KIAA0907
KIAA1211 KIAA1211
KIF3C kinesin family member 3C
KITLG KIT ligand
KLB klotho beta
KLHDC10 kelch domain containing 10
KLK9 kallikrein-related peptidase 9
KRT13 keratin 13, type I
KRT15 keratin 15, type I
KRT19 keratin 19, type I
KRT25 keratin 25, type I
KRT39 keratin 39, type I
KRT4 keratin 4, type II
KRT5 keratin 5, type II
KRT6A keratin 6A, type II
KRT74 keratin 74, type II
KRT83 keratin 83, type II
KRTAP10-2 keratin associated protein 10-2
KRTAP12-2 keratin associated protein 12-2
KRTAP9-4 keratin associated protein 9-4
L1CAM L1 cell adhesion molecule
LAMC2 laminin, gamma 2
LGALS7 lectin, galactoside-binding, soluble, 7
LIN52 lin-52 DREAM MuvB core complex component
LINC00051 long intergenic non-protein coding RNA 51
LINC00052 long intergenic non-protein coding RNA 52
LINC00158 long intergenic non-protein coding RNA 158
LINC00313 long intergenic non-protein coding RNA 313
LINC00589 long intergenic non-protein coding RNA 589
LINC00593 long intergenic non-protein coding RNA 593
LINC00596 long intergenic non-protein coding RNA 596
LINC01553 long intergenic non-protein coding RNA 1553
LINC01565 long intergenic non-protein coding RNA 1565
LINC01599 long intergenic non-protein coding RNA 1599
LMBR1 limb development membrane protein 1
LNP1 leukemia NUP98 fusion partner 1
LOC100129055 cyclin Y-like 1 pseudogene
LOC145837
LOC284798 uncharacterized LOC284798
LOC285627 uncharacterized LOC285627
LOC407835 mitogen-activated protein kinase kinase 2 pseudogene
LOC727924 uncharacterized LOC727924
LOC93432
LPAL2 lipoprotein, Lp(a)-like 2, pseudogene
LRRC4 leucine rich repeat containing 4
LUC7L2 LUC7-like 2 (S. cerevisiae)
LUZP6 leucine zipper protein 6
LYSMD1 LysM, putative peptidoglycan-binding, domain containing 1
MAGEB4 melanoma antigen family B4
MAMLD1 mastermind-like domain containing 1
MAP1S microtubule-associated protein 1S
MARCH1 membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
MB21D2 Mab-21 domain containing 2
MC2R melanocortin 2 receptor (adrenocorticotropic hormone)
MC3R melanocortin 3 receptor
METTL2B methyltransferase like 2B
MKRN1 makorin ring finger protein 1
MROH2B maestro heat-like repeat family member 2B
MRS2P2 MRS2 pseudogene 2
MUC21 mucin 21, cell surface associated
MYO18B myosin XVIIIB
MYO3B myosin IIIB
NAA38 N(alpha)-acetyltransferase 38, NatC auxiliary subunit
NACA nascent polypeptide-associated complex alpha subunit
NBEAP1 neurobeachin pseudogene 1
NCAM2 neural cell adhesion molecule 2
NDUFA5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5
NEUROD4 neuronal differentiation 4
NMNAT2 nicotinamide nucleotide adenylyltransferase 2
NMU neuromedin U
NR4A1 nuclear receptor subfamily 4, group A, member 1
NSA2 NSA2 ribosome biogenesis homolog (S. cerevisiae)
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1
NUFIP1 nuclear fragile X mental retardation protein interacting protein 1
NUTM1 NUT midline carcinoma, family member 1
OPRK1 opioid receptor, kappa 1
OR10G2 olfactory receptor, family 10, subfamily G, member 2
OR11L1 olfactory receptor, family 11, subfamily L, member 1
OR13C5 olfactory receptor, family 13, subfamily C, member 5
OR14A16 olfactory receptor, family 14, subfamily A, member 16
OR1L4 olfactory receptor, family 1, subfamily L, member 4
OR2AG1 olfactory receptor, family 2, subfamily AG, member 1 (gene/pseudogene)
OR2F2 olfactory receptor, family 2, subfamily F, member 2
OR2M4 olfactory receptor, family 2, subfamily M, member 4
OR2T12 olfactory receptor, family 2, subfamily T, member 12
OR2T4 olfactory receptor, family 2, subfamily T, member 4
OR4D6 olfactory receptor, family 4, subfamily D, member 6
OR4K15 olfactory receptor, family 4, subfamily K, member 15
OR4M2 olfactory receptor, family 4, subfamily M, member 2
OR4N3P olfactory receptor, family 4, subfamily N, member 3 pseudogene
OR4N4 olfactory receptor, family 4, subfamily N, member 4
OR4Q3 olfactory receptor, family 4, subfamily Q, member 3
OR51A2 olfactory receptor, family 51, subfamily A, member 2
OR51A4 olfactory receptor, family 51, subfamily A, member 4
OR51Q1 olfactory receptor, family 51, subfamily Q, member 1 (gene/pseudogene)
OR52I2 olfactory receptor, family 52, subfamily I, member 2
OR5A1 olfactory receptor, family 5, subfamily A, member 1
OR5E1P olfactory receptor, family 5, subfamily E, member 1 pseudogene
OR5K1 olfactory receptor, family 5, subfamily K, member 1
OR6N2 olfactory receptor, family 6, subfamily N, member 2
OR8G5 olfactory receptor, family 8, subfamily G, member 5
OR8J1 olfactory receptor, family 8, subfamily J, member 1
P2RX6P purinergic receptor P2X, ligand gated ion channel, 6 pseudogene
PADI3 peptidyl arginine deiminase, type III
PARP6 poly (ADP-ribose) polymerase family, member 6
PAXIP1 PAX interacting (with transcription-activation domain) protein 1
PCDHA10 protocadherin alpha 10
PCDHB2 protocadherin beta 2
PCDHGA3 protocadherin gamma subfamily A, 3
PCDHGB1 protocadherin gamma subfamily B, 1
PDC phosducin
PEX11B peroxisomal biogenesis factor 11 beta
PEX19 peroxisomal biogenesis factor 19
PHF21B PHD finger protein 21B
PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
PJA1 praja ring finger 1, E3 ubiquitin protein ligase
PLA2G2C phospholipase A2, group IIC
POGK pogo transposable element with KRAB domain
POPDC2 popeye domain containing 2
POTEB POTE ankyrin domain family, member B
POTEG POTE ankyrin domain family, member G
POU5F1B POU class 5 homeobox 1B
PPIAL4D peptidylprolyl isomerase A (cyclophilin A)-like 4D
PPP1R2P9 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9
PRAMEF16 PRAME family member 16
PRKAG3 protein kinase, AMP-activated, gamma 3 non-catalytic subunit
PRPF6 pre-mRNA processing factor 6
PRSS37 protease, serine, 37
PSG4 pregnancy specific beta-1-glycoprotein 4
RAB11B RAB11B, member RAS oncogene family
RAET1L retinoic acid early transcript 1L
RANBP3 RAN binding protein 3
RBM3 RNA binding motif (RNP1, RRM) protein 3
RBMS3 RNA binding motif, single stranded interacting protein 3
RBP2 retinol binding protein 2, cellular
RCOR3 REST corepressor 3
REPS1 RALBP1 associated Eps domain containing 1
RFWD2 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
RGAG4 retrotransposon gag domain containing 4
RGMB repulsive guidance molecule family member b
RGPD8 RANBP2-like and GRIP domain containing 8
RINT1 RAD50 interactor 1
RNF103 ring finger protein 103
RNF187 ring finger protein 187
RPL15 ribosomal protein L15
RPL21 ribosomal protein L21
RPL29P2 ribosomal protein L29 pseudogene 2
RPL36AL ribosomal protein L36a-like
RPS27 ribosomal protein S27
RPS28 ribosomal protein S28
RRAGB Ras-related GTP binding B
RRP15 ribosomal RNA processing 15 homolog (S. cerevisiae)
SCARNA16 small Cajal body-specific RNA 16
SCARNA23 small Cajal body-specific RNA 23
SCGB1C1 secretoglobin, family 1C, member 1
SDE2 SDE2 telomere maintenance homolog (S. pombe)
SDHAF4 succinate dehydrogenase complex assembly factor 4
SERHL serine hydrolase-like (pseudogene)
SERPINB12 serpin peptidase inhibitor, clade B (ovalbumin), member 12
SERPINB13 serpin peptidase inhibitor, clade B (ovalbumin), member 13
SERPINB5 serpin peptidase inhibitor, clade B (ovalbumin), member 5
SERPINE3 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3
SHD Src homology 2 domain containing transforming protein D
SIK1 salt-inducible kinase 1
SLC24A3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1
SMG7 SMG7 nonsense mediated mRNA decay factor
SND1 staphylococcal nuclease and tudor domain containing 1
SNORA12 small nucleolar RNA, H/ACA box 12
SNORA37 small nucleolar RNA, H/ACA box 37
SNORA72 small nucleolar RNA, H/ACA box 72
SNORA77 small nucleolar RNA, H/ACA box 77
SNORA9 small nucleolar RNA, H/ACA box 9
SNX27 sorting nexin family member 27
SPACA3 sperm acrosome associated 3
SPATA31A5 SPATA31 subfamily A, member 5
SPDYE2 speedy/RINGO cell cycle regulator family member E2
SPIN3 spindlin family, member 3
SPINK6 serine peptidase inhibitor, Kazal type 6
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1
SPRR1A small proline-rich protein 1A
SPRR2G small proline-rich protein 2G
SPRR3 small proline-rich protein 3
SRI sorcin
STXBP6 syntaxin binding protein 6 (amisyn)
SUCO SUN domain containing ossification factor
SUSD4 sushi domain containing 4
TADA1 transcriptional adaptor 1
TAS2R5 taste receptor, type 2, member 5
TAS2R9 taste receptor, type 2, member 9
TAT tyrosine aminotransferase
TATDN3 TatD DNase domain containing 3
TERF2 telomeric repeat binding factor 2
THAP5 THAP domain containing 5
TINCR tissue differentiation-inducing non-protein coding RNA
TMEM161B transmembrane protein 161B
TMEM63C transmembrane protein 63C
TMEM8B transmembrane protein 8B
TMOD4 tropomodulin 4 (muscle)
TMPRSS11B transmembrane protease, serine 11B
TMPRSS11D transmembrane protease, serine 11D
TMPRSS11F transmembrane protease, serine 11F
TNS4 tensin 4
TOMM20L translocase of outer mitochondrial membrane 20 homolog (yeast)-like
TPR translocated promoter region, nuclear basket protein
TRMT1L tRNA methyltransferase 1 homolog (S. cerevisiae)-like
TROVE2 TROVE domain family, member 2
TSC22D1 TSC22 domain family, member 1
TSNAX translin-associated factor X
TSPAN12 tetraspanin 12
TSPAN32 tetraspanin 32
TTTY10 testis-specific transcript, Y-linked 10 (non-protein coding)
TTTY6 testis-specific transcript, Y-linked 6 (non-protein coding)
TUBGCP5 tubulin, gamma complex associated protein 5
UBE2Q1 ubiquitin-conjugating enzyme E2Q family member 1
UBQLN4 ubiquilin 4
UGT1A1 UDP glucuronosyltransferase 1 family, polypeptide A1
UGT1A10 UDP glucuronosyltransferase 1 family, polypeptide A10
ULK4P2 ULK4 pseudogene 2
UQCRB ubiquinol-cytochrome c reductase binding protein
USP17L6P ubiquitin specific peptidase 17-like family member 6, pseudogene
VAMP4 vesicle-associated membrane protein 4
VDAC2 voltage-dependent anion channel 2
VSIG1 V-set and immunoglobulin domain containing 1
VWC2L von Willebrand factor C domain containing protein 2-like
WASL Wiskott-Aldrich syndrome-like
WISP3 WNT1 inducible signaling pathway protein 3
WWP2 WW domain containing E3 ubiquitin protein ligase 2
XAB2 XPA binding protein 2
YAF2 YY1 associated factor 2
YY1AP1 YY1 associated protein 1
ZFAS1 ZNFX1 antisense RNA 1
ZFP90 ZFP90 zinc finger protein
ZFR2 zinc finger RNA binding protein 2
ZNF14 zinc finger protein 14
ZNF212 zinc finger protein 212
ZNF254 zinc finger protein 254
ZNF263 zinc finger protein 263
ZNF277 zinc finger protein 277
ZNF282 zinc finger protein 282
ZNF317 zinc finger protein 317
ZNF398 zinc finger protein 398
ZNF554 zinc finger protein 554
ZNF559 zinc finger protein 559
ZNF561 zinc finger protein 561
ZNF562 zinc finger protein 562
ZNF57 zinc finger protein 57
ZNF746 zinc finger protein 746
ZNF767P zinc finger family member 767, pseudogene
ZNF77 zinc finger protein 77
ZNF777 zinc finger protein 777
ZNF786 zinc finger protein 786
ZNF80 zinc finger protein 80
ZNF800 zinc finger protein 800
ZNF830 zinc finger protein 830
ZNF84 zinc finger protein 84
ZP4 zona pellucida glycoprotein 4

low expression

Symbol Name
ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
CAT catalase
GGPS1 geranylgeranyl diphosphate synthase 1
REXO4 REX4, RNA exonuclease 4 homolog (S. cerevisiae)
ZNF808 zinc finger protein 808