Brain Lower Grade Glioma_LGG_TCGA-S9-A7QX-01A-11R-A34F-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

290 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-S9-A7QX-01A-11R-A34F-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABCB7 ATP-binding cassette, sub-family B (MDR/TAP), member 7
ABCE1 ATP-binding cassette, sub-family E (OABP), member 1
ADAM30 ADAM metallopeptidase domain 30
ADAT2 adenosine deaminase, tRNA-specific 2
AFM afamin
AGBL3 ATP/GTP binding protein-like 3
ALDH1B1 aldehyde dehydrogenase 1 family, member B1
BCAN brevican
BICD2 bicaudal D homolog 2 (Drosophila)
C1ORF100 chromosome 1 open reading frame 100
C1ORF185 chromosome 1 open reading frame 185
C20ORF27 chromosome 20 open reading frame 27
C21ORF62-AS1 C21orf62 antisense RNA 1
C4ORF26 chromosome 4 open reading frame 26
CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
CATSPER4 cation channel, sperm associated 4
CBLB Cbl proto-oncogene B, E3 ubiquitin protein ligase
CBWD1 COBW domain containing 1
CCDC102B coiled-coil domain containing 102B
CCDC144B coiled-coil domain containing 144B (pseudogene)
CCDC86 coiled-coil domain containing 86
CDK8 cyclin-dependent kinase 8
CECR5-AS1 CECR5 antisense RNA 1
CHST9 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
CIZ1 CDKN1A interacting zinc finger protein 1
CLUH clustered mitochondria (cluA/CLU1) homolog
CMPK1 cytidine monophosphate (UMP-CMP) kinase 1, cytosolic
COL6A4P2 collagen, type VI, alpha 4 pseudogene 2
COPG2 coatomer protein complex, subunit gamma 2
COX18 COX18 cytochrome c oxidase assembly factor
COX8C cytochrome c oxidase subunit VIIIC
CPSF4 cleavage and polyadenylation specific factor 4, 30kDa
CRB1 crumbs family member 1, photoreceptor morphogenesis associated
CRIPAK cysteine-rich PAK1 inhibitor
CRLS1 cardiolipin synthase 1
CRTAP cartilage associated protein
CSH2 chorionic somatomammotropin hormone 2
CTDNEP1 CTD nuclear envelope phosphatase 1
CTU1 cytosolic thiouridylase subunit 1
CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4
CYP3A43 cytochrome P450, family 3, subfamily A, polypeptide 43
CYP4Z2P cytochrome P450, family 4, subfamily Z, polypeptide 2, pseudogene
DDX10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
DGAT2L6 diacylglycerol O-acyltransferase 2-like 6
DLGAP1 discs, large (Drosophila) homolog-associated protein 1
DNAJC25-GNG10 DNAJC25-GNG10 readthrough
DPH2 DPH2 homolog (S. cerevisiae)
DPH5 diphthamide biosynthesis 5
DPRX divergent-paired related homeobox
DSCR10 Down syndrome critical region 10 (non-protein coding)
DVL1 dishevelled segment polarity protein 1
EEF1A1 eukaryotic translation elongation factor 1 alpha 1
EEF1B2 eukaryotic translation elongation factor 1 beta 2
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3
EEF1G eukaryotic translation elongation factor 1 gamma
EEF2 eukaryotic translation elongation factor 2
EIF2S3 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa
EIF3CL eukaryotic translation initiation factor 3, subunit C-like
EIF3E eukaryotic translation initiation factor 3, subunit E
EIF3H eukaryotic translation initiation factor 3, subunit H
EIF3M eukaryotic translation initiation factor 3, subunit M
ERCC1 excision repair cross-complementation group 1
ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)
ESPNP espin pseudogene
EXOSC5 exosome component 5
FAM149A family with sequence similarity 149, member A
FAM27C family with sequence similarity 27, member C
FARSA phenylalanyl-tRNA synthetase, alpha subunit
FASTKD5 FAST kinase domains 5
FBL fibrillarin
FBXO46 F-box protein 46
FERMT1 fermitin family member 1
FLJ16779 uncharacterized LOC100192386
FNDC8 fibronectin type III domain containing 8
FRG2 FSHD region gene 2
GAGE10 G antigen 10
GALNT14 polypeptide N-acetylgalactosaminyltransferase 14
GALR3 galanin receptor 3
GATAD2A GATA zinc finger domain containing 2A
GCAT glycine C-acetyltransferase
GEMIN4 gem (nuclear organelle) associated protein 4
GEMIN5 gem (nuclear organelle) associated protein 5
GLTSCR2 glioma tumor suppressor candidate region gene 2
GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
GNL3 guanine nucleotide binding protein-like 3 (nucleolar)
GOLGA6D golgin A6 family, member D
GRAMD1A GRAM domain containing 1A
GRHPR glyoxylate reductase/hydroxypyruvate reductase
GSTTP2 glutathione S-transferase theta pseudogene 2
GTF2A1L general transcription factor IIA, 1-like
GTF3A general transcription factor IIIA
HADHA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit
HES6 hes family bHLH transcription factor 6
HGH1 HGH1 homolog (S. cerevisiae)
HIPK2 homeodomain interacting protein kinase 2
HIST1H3I histone cluster 1, H3i
HIST3H2A histone cluster 3, H2a
HSD17B13 hydroxysteroid (17-beta) dehydrogenase 13
HSF1 heat shock transcription factor 1
HSPD1 heat shock 60kDa protein 1 (chaperonin)
IFNA10 interferon, alpha 10
IFNA4 interferon, alpha 4
IFNW1 interferon, omega 1
IGLL3P immunoglobulin lambda-like polypeptide 3, pseudogene
IMP4 IMP4, U3 small nucleolar ribonucleoprotein
IMPDH2 IMP (inosine 5'-monophosphate) dehydrogenase 2
INPPL1 inositol polyphosphate phosphatase-like 1
IPO4 importin 4
IQCF5 IQ motif containing F5
IRAK1 interleukin-1 receptor-associated kinase 1
ITPA inosine triphosphatase (nucleoside triphosphate pyrophosphatase)
KARS lysyl-tRNA synthetase
KCNV2 potassium channel, voltage gated modifier subfamily V, member 2
KDM4E lysine (K)-specific demethylase 4E
KRT12 keratin 12, type I
KRTAP10-12 keratin associated protein 10-12
KRTAP13-1 keratin associated protein 13-1
KRTAP4-4 keratin associated protein 4-4
LARS leucyl-tRNA synthetase
LCORL ligand dependent nuclear receptor corepressor-like
LETM1 leucine zipper-EF-hand containing transmembrane protein 1
LINC01553 long intergenic non-protein coding RNA 1553
LINC01590 long intergenic non-protein coding RNA 1590
LOC646762 uncharacterized LOC646762
LOC90784 uncharacterized LOC90784
LOC93432
LRRC30 leucine rich repeat containing 30
LYG2 lysozyme G-like 2
MAML1 mastermind-like 1 (Drosophila)
MARS2 methionyl-tRNA synthetase 2, mitochondrial
MCM3AP minichromosome maintenance complex component 3 associated protein
METAP1 methionyl aminopeptidase 1
MGC16142 uncharacterized protein MGC16142
MINA MYC induced nuclear antigen
MPST mercaptopyruvate sulfurtransferase
MRPL42P5 mitochondrial ribosomal protein L42 pseudogene 5
MTA1 metastasis associated 1
MYBBP1A MYB binding protein (P160) 1a
NBPF1 neuroblastoma breakpoint family, member 1
NDUFAF2 NADH dehydrogenase (ubiquinone) complex I, assembly factor 2
NIT2 nitrilase family, member 2
NME1-NME2 NME1-NME2 readthrough
NOB1 NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)
NOL6 nucleolar protein 6 (RNA-associated)
NOP14 NOP14 nucleolar protein
NPVF neuropeptide VF precursor
NUDT6 nudix (nucleoside diphosphate linked moiety X)-type motif 6
OR10G9 olfactory receptor, family 10, subfamily G, member 9
OR11H4 olfactory receptor, family 11, subfamily H, member 4
OR2H2 olfactory receptor, family 2, subfamily H, member 2
OR2M5 olfactory receptor, family 2, subfamily M, member 5
OR2W5 olfactory receptor, family 2, subfamily W, member 5 (gene/pseudogene)
OR4X2 olfactory receptor, family 4, subfamily X, member 2 (gene/pseudogene)
OR51S1 olfactory receptor, family 51, subfamily S, member 1
OR5AP2 olfactory receptor, family 5, subfamily AP, member 2
OTUD6A OTU deubiquitinase 6A
OXSM 3-oxoacyl-ACP synthase, mitochondrial
PAGE2 P antigen family, member 2 (prostate associated)
PAQR7 progestin and adipoQ receptor family member VII
PARS2 prolyl-tRNA synthetase 2, mitochondrial (putative)
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble)
PDGFC platelet derived growth factor C
PFAS phosphoribosylformylglycinamidine synthase
PGBD4 piggyBac transposable element derived 4
PGD phosphogluconate dehydrogenase
PHB2 prohibitin 2
PHOX2A paired-like homeobox 2a
POLG2 polymerase (DNA directed), gamma 2, accessory subunit
POLN polymerase (DNA directed) nu
POLR1E polymerase (RNA) I polypeptide E, 53kDa
POLR3D polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
POLRMT polymerase (RNA) mitochondrial (DNA directed)
PP2D1 protein phosphatase 2C-like domain containing 1
PRAMEF11 PRAME family member 11
PRAMEF16 PRAME family member 16
PRDM14 PR domain containing 14
PRKACG protein kinase, cAMP-dependent, catalytic, gamma
PRORSD1P prolyl-tRNA synthetase associated domain containing 1, pseudogene
PRR23A proline rich 23A
PRR30 proline rich 30
PTCD1 pentatricopeptide repeat domain 1
QARS glutaminyl-tRNA synthetase
RABGGTB Rab geranylgeranyltransferase, beta subunit
RCC1 regulator of chromosome condensation 1
RGS9BP regulator of G protein signaling 9 binding protein
RPAP1 RNA polymerase II associated protein 1
RPL10A ribosomal protein L10a
RPL11 ribosomal protein L11
RPL13A ribosomal protein L13a
RPL13AP6 ribosomal protein L13a pseudogene 6
RPL17 ribosomal protein L17
RPL18 ribosomal protein L18
RPL22 ribosomal protein L22
RPL23 ribosomal protein L23
RPL26 ribosomal protein L26
RPL28 ribosomal protein L28
RPL3 ribosomal protein L3
RPL31 ribosomal protein L31
RPL3L ribosomal protein L3-like
RPL4 ribosomal protein L4
RPL5 ribosomal protein L5
RPL8 ribosomal protein L8
RPS11 ribosomal protein S11
RPS16 ribosomal protein S16
RPS19 ribosomal protein S19
RPS2 ribosomal protein S2
RPS3A ribosomal protein S3A
RPS5 ribosomal protein S5
RPS6 ribosomal protein S6
RPS9 ribosomal protein S9
RPSAP9 ribosomal protein SA pseudogene 9
RRP7BP ribosomal RNA processing 7 homolog B (S. cerevisiae), pseudogene
RRP9 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)
RSAD1 radical S-adenosyl methionine domain containing 1
RSL1D1 ribosomal L1 domain containing 1
SCARNA16 small Cajal body-specific RNA 16
SCARNA3 small Cajal body-specific RNA 3
SCLT1 sodium channel and clathrin linker 1
SCLY selenocysteine lyase
SEBOX SEBOX homeobox
SEC11A SEC11 homolog A (S. cerevisiae)
SH2D7 SH2 domain containing 7
SH3RF3 SH3 domain containing ring finger 3
SIRT2 sirtuin 2
SLC2A11 solute carrier family 2 (facilitated glucose transporter), member 11
SLC5A10 solute carrier family 5 (sodium/sugar cotransporter), member 10
SLC9A5 solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5
SND1 staphylococcal nuclease and tudor domain containing 1
SNHG3 small nucleolar RNA host gene 3
SNHG5 small nucleolar RNA host gene 5
SNORA16B small nucleolar RNA, H/ACA box 16B
SNORA62 small nucleolar RNA, H/ACA box 62
SNORA71B small nucleolar RNA, H/ACA box 71B
SNORA72 small nucleolar RNA, H/ACA box 72
SNORA75 small nucleolar RNA, H/ACA box 75
SOCS4 suppressor of cytokine signaling 4
SPANXC SPANX family, member C
SPATA24 spermatogenesis associated 24
SPATC1L spermatogenesis and centriole associated 1-like
SRM spermidine synthase
SSTR5 somatostatin receptor 5
ST7-OT4 ST7 overlapping transcript 4
STAG3 stromal antigen 3
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae)
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae)
SYMPK symplekin
TAS2R3 taste receptor, type 2, member 3
TATDN1 TatD DNase domain containing 1
TEX37 testis expressed 37
TEX43 testis expressed 43
TFDP2 transcription factor Dp-2 (E2F dimerization partner 2)
TIMM50 translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)
TMEM213 transmembrane protein 213
TNFRSF13C tumor necrosis factor receptor superfamily, member 13C
TNPO3 transportin 3
TOP1MT topoisomerase (DNA) I, mitochondrial
TRAP1 TNF receptor-associated protein 1
TRAPPC6A trafficking protein particle complex 6A
TRIM53AP tripartite motif containing 53A, pseudogene
TRMT12 tRNA methyltransferase 12 homolog (S. cerevisiae)
TSEN2 TSEN2 tRNA splicing endonuclease subunit
TSPEAR-AS2 TSPEAR antisense RNA 2
UQCRHL ubiquinol-cytochrome c reductase hinge protein-like
UST uronyl-2-sulfotransferase
UXT ubiquitously-expressed, prefoldin-like chaperone
VARS valyl-tRNA synthetase
WDR46 WD repeat domain 46
XPO5 exportin 5
XPO6 exportin 6
ZAN zonadhesin (gene/pseudogene)
ZBTB24 zinc finger and BTB domain containing 24
ZFP62 ZFP62 zinc finger protein
ZNF252P-AS1 ZNF252P antisense RNA 1
ZNF286B zinc finger protein 286B
ZNF324B zinc finger protein 324B
ZNF549 zinc finger protein 549
ZNF579 zinc finger protein 579
ZNF581 zinc finger protein 581
ZNF598 zinc finger protein 598
ZNF74 zinc finger protein 74
ZPR1 ZPR1 zinc finger

low expression

Symbol Name
EIF4H eukaryotic translation initiation factor 4H
JKAMP JNK1/MAPK8-associated membrane protein
KDM8 lysine (K)-specific demethylase 8
MED6 mediator complex subunit 6
SNW1 SNW domain containing 1
SPPL3 signal peptide peptidase like 3
USP30 ubiquitin specific peptidase 30
ZNF594 zinc finger protein 594
ZNF630 zinc finger protein 630