Brain Lower Grade Glioma_LGG_TCGA-S9-A6WD-01A-12R-A33Z-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

329 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-S9-A6WD-01A-12R-A33Z-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
ABCA17P ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene
ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)
ACAT1 acetyl-CoA acetyltransferase 1
ACER3 alkaline ceramidase 3
ACTR3BP2 ACTR3B pseudogene 2
ADGRF1 adhesion G protein-coupled receptor F1
AGR2 anterior gradient 2
ALDH1B1 aldehyde dehydrogenase 1 family, member B1
ALG11 ALG11, alpha-1,2-mannosyltransferase
ALG8 ALG8, alpha-1,3-glucosyltransferase
ALKBH8 alkB, alkylation repair homolog 8 (E. coli)
ALOX12B arachidonate 12-lipoxygenase, 12R type
AMDHD1 amidohydrolase domain containing 1
ANGPTL2 angiopoietin-like 2
ANKRD13A ankyrin repeat domain 13A
ARL14 ADP-ribosylation factor-like 14
ATM ATM serine/threonine kinase
ATOH8 atonal homolog 8 (Drosophila)
ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)
B3GNT3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3
B3GNT9 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
BARHL1 BarH-like homeobox 1
BCYRN1 brain cytoplasmic RNA 1
BEAN1 brain expressed, associated with NEDD4, 1
BOC BOC cell adhesion associated, oncogene regulated
BPESC1 blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding)
BRMS1L breast cancer metastasis-suppressor 1-like
C11ORF1 chromosome 11 open reading frame 1
C11ORF57 chromosome 11 open reading frame 57
C11ORF71 chromosome 11 open reading frame 71
C19ORF45 chromosome 19 open reading frame 45
C1ORF116 chromosome 1 open reading frame 116
C1ORF210 chromosome 1 open reading frame 210
C20ORF196 chromosome 20 open reading frame 196
C2ORF57 chromosome 2 open reading frame 57
C2ORF82 chromosome 2 open reading frame 82
C9ORF152 chromosome 9 open reading frame 152
C9ORF57 chromosome 9 open reading frame 57
CADM1 cell adhesion molecule 1
CAGE1 cancer antigen 1
CBLC Cbl proto-oncogene C, E3 ubiquitin protein ligase
CCDC185 coiled-coil domain containing 185
CCDC82 coiled-coil domain containing 82
CCDC90B coiled-coil domain containing 90B
CCT4 chaperonin containing TCP1, subunit 4 (delta)
CCT7 chaperonin containing TCP1, subunit 7 (eta)
CDK8 cyclin-dependent kinase 8
CDNF cerebral dopamine neurotrophic factor
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5
CEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)
CEP57 centrosomal protein 57kDa
CFAP70 cilia and flagella associated protein 70
CHRND cholinergic receptor, nicotinic, delta (muscle)
CHST3 carbohydrate (chondroitin 6) sulfotransferase 3
CIDEC cell death-inducing DFFA-like effector c
CLDN4 claudin 4
CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand
CLNS1A chloride channel, nucleotide-sensitive, 1A
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin
CLRN1-AS1 CLRN1 antisense RNA 1
CNTD1 cyclin N-terminal domain containing 1
COL18A1-AS1 COL18A1 antisense RNA 1
COL4A3 collagen, type IV, alpha 3 (Goodpasture antigen)
COL4A4 collagen, type IV, alpha 4
CR2 complement component (3d/Epstein Barr virus) receptor 2
CRB3 crumbs family member 3
CRISP3 cysteine-rich secretory protein 3
CRYBG3 beta-gamma crystallin domain containing 3
CTSE cathepsin E
CUL5 cullin 5
CXCL17 chemokine (C-X-C motif) ligand 17
CXORF57 chromosome X open reading frame 57
CYCSP52 cytochrome c, somatic pseudogene 52
CYP8B1 cytochrome P450, family 8, subfamily B, polypeptide 1
DCAF12L1 DDB1 and CUL4 associated factor 12-like 1
DCUN1D5 DCN1, defective in cullin neddylation 1, domain containing 5
DDX10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
DEFB132 defensin, beta 132
DGAT2 diacylglycerol O-acyltransferase 2
DHCR7 7-dehydrocholesterol reductase
DLAT dihydrolipoamide S-acetyltransferase
DNAJC30 DnaJ (Hsp40) homolog, subfamily C, member 30
DPY19L2 dpy-19-like 2 (C. elegans)
DPY19L2P4 DPY19L2 pseudogene 4
DTD2 D-tyrosyl-tRNA deacylase 2 (putative)
DUS3L dihydrouridine synthase 3-like (S. cerevisiae)
ECHDC1 ethylmalonyl-CoA decarboxylase 1
EPCAM epithelial cell adhesion molecule
EPHA6 EPH receptor A6
ERN2 endoplasmic reticulum to nucleus signaling 2
EXOC3-AS1 EXOC3 antisense RNA 1
EXPH5 exophilin 5
F8A1 coagulation factor VIII-associated 1
FAAH2 fatty acid amide hydrolase 2
FAM136BP family with sequence similarity 136, member B, pseudogene
FAM163A family with sequence similarity 163, member A
FAM181B family with sequence similarity 181, member B
FAM216A family with sequence similarity 216, member A
FAM24B family with sequence similarity 24, member B
FCHSD2 FCH and double SH3 domains 2
FCRLB Fc receptor-like B
FER1L5 fer-1-like family member 5
FERMT1 fermitin family member 1
FIGLA folliculogenesis specific basic helix-loop-helix
FLJ37201 tigger transposable element derived 2 pseudogene
FRAT2 frequently rearranged in advanced T-cell lymphomas 2
FXYD2 FXYD domain containing ion transport regulator 2
FXYD6 FXYD domain containing ion transport regulator 6
GABRP gamma-aminobutyric acid (GABA) A receptor, pi
GABRR3 gamma-aminobutyric acid (GABA) A receptor, rho 3 (gene/pseudogene)
GADD45G growth arrest and DNA-damage-inducible, gamma
GCNT3 glucosaminyl (N-acetyl) transferase 3, mucin type
GGNBP1 gametogenetin binding protein 1 (pseudogene)
GGT6 gamma-glutamyltransferase 6
GHRH growth hormone releasing hormone
GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
GRIA4 glutamate receptor, ionotropic, AMPA 4
GSTO2 glutathione S-transferase omega 2
GSX1 GS homeobox 1
GTF2F2 general transcription factor IIF, polypeptide 2, 30kDa
GUSBP4 glucuronidase, beta pseudogene 4
HACL1 2-hydroxyacyl-CoA lyase 1
HBZ hemoglobin, zeta
HCFC2 host cell factor C2
HIST1H2BN histone cluster 1, H2bn
HIST3H2A histone cluster 3, H2a
HLTF helicase-like transcription factor
HMBS hydroxymethylbilane synthase
HRH3 histamine receptor H3
HRK harakiri, BCL2 interacting protein
HSPB9 heat shock protein, alpha-crystallin-related, B9
HSPD1 heat shock 60kDa protein 1 (chaperonin)
IFNA17 interferon, alpha 17
IL17C interleukin 17C
IL17D interleukin 17D
IL20 interleukin 20
INSL6 insulin-like 6
ITGB6 integrin, beta 6
KCNK12 potassium channel, two pore domain subfamily K, member 12
KCNK15 potassium channel, two pore domain subfamily K, member 15
KLK10 kallikrein-related peptidase 10
KREMEN2 kringle containing transmembrane protein 2
KRT17 keratin 17, type I
KRT19 keratin 19, type I
KRT27 keratin 27, type I
KRT7 keratin 7, type II
LAD1 ladinin 1
LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1
LAYN layilin
LINC00114 long intergenic non-protein coding RNA 114
LINC00167 long intergenic non-protein coding RNA 167
LOC100128239 uncharacterized LOC100128239
LOC100133985 uncharacterized LOC100133985
LOC389705 chromosome 4 open reading frame 27 pseudogene
LOC391322 D-dopachrome tautomerase-like
LOC643923 uncharacterized LOC643923
LRPPRC leucine-rich pentatricopeptide repeat containing
LRRC26 leucine rich repeat containing 26
LRRTM2 leucine rich repeat transmembrane neuronal 2
LYPD2 LY6/PLAUR domain containing 2
MB21D2 Mab-21 domain containing 2
MBLAC1 metallo-beta-lactamase domain containing 1
MED17 mediator complex subunit 17
MIP major intrinsic protein of lens fiber
MROH9 maestro heat-like repeat family member 9
MRPL48 mitochondrial ribosomal protein L48
MRPS16 mitochondrial ribosomal protein S16
MSX2 msh homeobox 2
MTIF2 mitochondrial translational initiation factor 2
MTTP microsomal triglyceride transfer protein
MUC13 mucin 13, cell surface associated
MUC16 mucin 16, cell surface associated
MUC5B mucin 5B, oligomeric mucus/gel-forming
MYH6 myosin, heavy chain 6, cardiac muscle, alpha
MYH7 myosin, heavy chain 7, cardiac muscle, beta
NARS2 asparaginyl-tRNA synthetase 2, mitochondrial (putative)
NBPF15 neuroblastoma breakpoint family, member 15
NDUFA10 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa
NDUFAF2 NADH dehydrogenase (ubiquinone) complex I, assembly factor 2
NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa
NEDD9 neural precursor cell expressed, developmentally down-regulated 9
NEU4 sialidase 4
NEUROG3 neurogenin 3
NKX2-8 NK2 homeobox 8
NKX6-3 NK6 homeobox 3
NOL3 nucleolar protein 3 (apoptosis repressor with CARD domain)
NOL7 nucleolar protein 7, 27kDa
NPAT nuclear protein, ataxia-telangiectasia locus
NPR1 natriuretic peptide receptor 1
NPW neuropeptide W
NUFIP1 nuclear fragile X mental retardation protein interacting protein 1
OBSCN obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
OR1D2 olfactory receptor, family 1, subfamily D, member 2
OR1J1 olfactory receptor, family 1, subfamily J, member 1
OR1L4 olfactory receptor, family 1, subfamily L, member 4
OR1N1 olfactory receptor, family 1, subfamily N, member 1
OR2AG2 olfactory receptor, family 2, subfamily AG, member 2
OR2B6 olfactory receptor, family 2, subfamily B, member 6
OR52H1 olfactory receptor, family 52, subfamily H, member 1
ORC4 origin recognition complex, subunit 4
OTC ornithine carbamoyltransferase
P2RX6 purinergic receptor P2X, ligand gated ion channel, 6
P2RX7 purinergic receptor P2X, ligand gated ion channel, 7
PAAF1 proteasomal ATPase-associated factor 1
PABPC1P2 poly(A) binding protein, cytoplasmic 1 pseudogene 2
PATE2 prostate and testis expressed 2
PATE3 prostate and testis expressed 3
PAX1 paired box 1
PAX5 paired box 5
PCDHB2 protocadherin beta 2
PCDHB8 protocadherin beta 8
PCSK9 proprotein convertase subtilisin/kexin type 9
PHF7 PHD finger protein 7
PHOSPHO2 phosphatase, orphan 2
PIGR polymeric immunoglobulin receptor
PLA2G12A phospholipase A2, group XIIA
PLEKHF1 pleckstrin homology domain containing, family F (with FYVE domain) member 1
PODXL2 podocalyxin-like 2
PPAPDC2 phosphatidic acid phosphatase type 2 domain containing 2
PPP6R3 protein phosphatase 6, regulatory subunit 3
PRCP prolylcarboxypeptidase (angiotensinase C)
PRSS22 protease, serine, 22
PRSS30P protease, serine, 30, pseudogene
PSMG4 proteasome (prosome, macropain) assembly chaperone 4
PSTK phosphoseryl-tRNA kinase
PTCD3 pentatricopeptide repeat domain 3
PTCHD3 patched domain containing 3
PTF1A pancreas specific transcription factor, 1a
PUS3 pseudouridylate synthase 3
PVRL1 poliovirus receptor-related 1 (herpesvirus entry mediator C)
RAB25 RAB25, member RAS oncogene family
RFXAP regulatory factor X-associated protein
RGS9BP regulator of G protein signaling 9 binding protein
RHCE Rh blood group, CcEe antigens
RNASE9 ribonuclease, RNase A family, 9 (non-active)
RNF103 ring finger protein 103
RNF121 ring finger protein 121
RNF217-AS1 RNF217 antisense RNA 1 (head to head)
RNF5P1 ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1
RPP14 ribonuclease P/MRP 14kDa subunit
RPS25 ribosomal protein S25
RPS4Y1 ribosomal protein S4, Y-linked 1
RPUSD4 RNA pseudouridylate synthase domain containing 4
S100A14 S100 calcium binding protein A14
S100P S100 calcium binding protein P
SATL1 spermidine/spermine N1-acetyl transferase-like 1
SC5D sterol-C5-desaturase
SCARNA9 small Cajal body-specific RNA 9
SCGB2A2 secretoglobin, family 2A, member 2
SCN11A sodium channel, voltage gated, type XI alpha subunit
SDHD succinate dehydrogenase complex, subunit D, integral membrane protein
SERHL serine hydrolase-like (pseudogene)
SERPINB5 serpin peptidase inhibitor, clade B (ovalbumin), member 5
SFXN4 sideroflexin 4
SIAE sialic acid acetylesterase
SLC1A1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
SLC25A6 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6
SLC35F2 solute carrier family 35, member F2
SLC36A3 solute carrier family 36, member 3
SLC44A4 solute carrier family 44, member 4
SLC5A1 solute carrier family 5 (sodium/glucose cotransporter), member 1
SLC9A2 solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2
SLC9B1 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1
SLCO1B3 solute carrier organic anion transporter family, member 1B3
SNORA29 small nucleolar RNA, H/ACA box 29
SOHLH2 spermatogenesis and oogenesis specific basic helix-loop-helix 2
SOX30 SRY (sex determining region Y)-box 30
SPCS2 signal peptidase complex subunit 2 homolog (S. cerevisiae)
SPDYE2 speedy/RINGO cell cycle regulator family member E2
SPR sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)
SRRM3 serine/arginine repetitive matrix 3
SSTR5 somatostatin receptor 5
STK26 serine/threonine protein kinase 26
SUSD5 sushi domain containing 5
SYCE1 synaptonemal complex central element protein 1
SYT14 synaptotagmin XIV
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa
TAS2R19 taste receptor, type 2, member 19
TAS2R31 taste receptor, type 2, member 31
TCAIM T cell activation inhibitor, mitochondrial
TCP10L2 t-complex 10-like 2
TEX19 testis expressed 19
THEM6 thioesterase superfamily member 6
THTPA thiamine triphosphatase
TLX1NB TLX1 neighbor
TM4SF4 transmembrane 4 L six family member 4
TM7SF2 transmembrane 7 superfamily member 2
TMEM116 transmembrane protein 116
TMEM126A transmembrane protein 126A
TMEM135 transmembrane protein 135
TMEM136 transmembrane protein 136
TMEM202 transmembrane protein 202
TMEM30A transmembrane protein 30A
TMEM5 transmembrane protein 5
TMEM74B transmembrane protein 74B
TMEM88B transmembrane protein 88B
TMPRSS4 transmembrane protease, serine 4
TMTC4 transmembrane and tetratricopeptide repeat containing 4
TPGS1 tubulin polyglutamylase complex subunit 1
TPTE2P3 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3
TRAP1 TNF receptor-associated protein 1
TRAPPC4 trafficking protein particle complex 4
TRIM15 tripartite motif containing 15
TRUB2 TruB pseudouridine (psi) synthase family member 2
TSPAN1 tetraspanin 1
TSPYL6 TSPY-like 6
TTC24 tetratricopeptide repeat domain 24
TTC36 tetratricopeptide repeat domain 36
TTLL12 tubulin tyrosine ligase-like family member 12
TTTY14 testis-specific transcript, Y-linked 14 (non-protein coding)
UBTFL1 upstream binding transcription factor, RNA polymerase I-like 1
UNC80 unc-80 homolog (C. elegans)
VAMP4 vesicle-associated membrane protein 4
VDAC2 voltage-dependent anion channel 2
WFDC1 WAP four-disulfide core domain 1
WFDC2 WAP four-disulfide core domain 2
XKR6 XK, Kell blood group complex subunit-related family, member 6
ZIM3 zinc finger, imprinted 3
ZNF33B zinc finger protein 33B
ZNF469 zinc finger protein 469
ZNF99 zinc finger protein 99

low expression

Symbol Name
ALKBH1 alkB, alkylation repair homolog 1 (E. coli)
MBD1 methyl-CpG binding domain protein 1
MFAP1 microfibrillar-associated protein 1
SMEK1 SMEK homolog 1, suppressor of mek1 (Dictyostelium)
VPS39 vacuolar protein sorting 39 homolog (S. cerevisiae)
ZFYVE1 zinc finger, FYVE domain containing 1
ZNF630 zinc finger protein 630