Brain Lower Grade Glioma_LGG_TCGA-P5-A735-01A-11R-A32Q-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

243 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-P5-A735-01A-11R-A32Q-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
AATF apoptosis antagonizing transcription factor
ACSF3 acyl-CoA synthetase family member 3
ACTL7A actin-like 7A
ACY3 aminoacylase 3
ADGRL1 adhesion G protein-coupled receptor L1
ALX3 ALX homeobox 3
APOE apolipoprotein E
ARL5C ADP-ribosylation factor-like 5C
ARVCF armadillo repeat gene deleted in velocardiofacial syndrome
ATXN3L ataxin 3-like
ATXN7L2 ataxin 7-like 2
AXIN1 axin 1
B3GALT6 UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6
BAHD1 bromo adjacent homology domain containing 1
BCAR4 breast cancer anti-estrogen resistance 4 (non-protein coding)
BLOC1S3 biogenesis of lysosomal organelles complex-1, subunit 3
BRF1 BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
C11ORF94 chromosome 11 open reading frame 94
C12ORF56 chromosome 12 open reading frame 56
C15ORF32 chromosome 15 open reading frame 32
C19ORF73 chromosome 19 open reading frame 73
C1ORF146 chromosome 1 open reading frame 146
C21ORF33 chromosome 21 open reading frame 33
C2ORF27A chromosome 2 open reading frame 27A
C2ORF27B chromosome 2 open reading frame 27B
C3ORF79 chromosome 3 open reading frame 79
CACNG7 calcium channel, voltage-dependent, gamma subunit 7
CADM4 cell adhesion molecule 4
CBWD5 COBW domain containing 5
CCDC116 coiled-coil domain containing 116
CCDC172 coiled-coil domain containing 172
CCDC79 coiled-coil domain containing 79
CCDC85C coiled-coil domain containing 85C
CCDC97 coiled-coil domain containing 97
CCT8L2 chaperonin containing TCP1, subunit 8 (theta)-like 2
CD2BP2 CD2 (cytoplasmic tail) binding protein 2
CLIP2 CAP-GLY domain containing linker protein 2
CLRN3 clarin 3
CNOT3 CCR4-NOT transcription complex, subunit 3
CPT1C carnitine palmitoyltransferase 1C
CRYAA crystallin, alpha A
CSNK1E casein kinase 1, epsilon
CYP1A2 cytochrome P450, family 1, subfamily A, polypeptide 2
DACT3 dishevelled-binding antagonist of beta-catenin 3
DCST1 DC-STAMP domain containing 1
DNASE1 deoxyribonuclease I
DVL1 dishevelled segment polarity protein 1
DYRK1B dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
EIF5B eukaryotic translation initiation factor 5B
ESX1 ESX homeobox 1
FAM109A family with sequence similarity 109, member A
FAM110B family with sequence similarity 110, member B
FBXO44 F-box protein 44
FBXO46 F-box protein 46
FTSJ3 FtsJ homolog 3 (E. coli)
FUT2 fucosyltransferase 2 (secretor status included)
GAGE12J G antigen 12J
GATA5 GATA binding protein 5
GCM2 glial cells missing homolog 2 (Drosophila)
GLIS1 GLIS family zinc finger 1
GLTSCR1 glioma tumor suppressor candidate region gene 1
GLTSCR2 glioma tumor suppressor candidate region gene 2
GP9 glycoprotein IX (platelet)
GPATCH3 G patch domain containing 3
GPR153 G protein-coupled receptor 153
GRIK5 glutamate receptor, ionotropic, kainate 5
GTF2A1L general transcription factor IIA, 1-like
GTF3C5 general transcription factor IIIC, polypeptide 5, 63kDa
GUCA2A guanylate cyclase activator 2A (guanylin)
H2AFY2 H2A histone family, member Y2
H2BFWT H2B histone family, member W, testis-specific
HIC2 hypermethylated in cancer 2
HIGD1C HIG1 hypoxia inducible domain family, member 1C
HIRA histone cell cycle regulator
HIST1H4J histone cluster 1, H4j
HMGB3P1 high mobility group box 3 pseudogene 1
HMGN5 high mobility group nucleosome binding domain 5
HNF1A HNF1 homeobox A
HSF2BP heat shock transcription factor 2 binding protein
IGFN1 immunoglobulin-like and fibronectin type III domain containing 1
IGLON5 IgLON family member 5
IL4 interleukin 4
IRF2BP1 interferon regulatory factor 2 binding protein 1
IVL involucrin
KHDC3L KH domain containing 3-like, subcortical maternal complex member
KIF7 kinesin family member 7
KLRC3 killer cell lectin-like receptor subfamily C, member 3
KPTN kaptin (actin binding protein)
KRT35 keratin 35, type I
KRTAP21-2 keratin associated protein 21-2
LASP1 LIM and SH3 protein 1
LCE1D late cornified envelope 1D
LENG1 leukocyte receptor cluster (LRC) member 1
LINC00515 long intergenic non-protein coding RNA 515
LOC100130264 uncharacterized LOC100130264
LOC148413 uncharacterized LOC148413
LOC91450 uncharacterized LOC91450
LPL lipoprotein lipase
LRP3 low density lipoprotein receptor-related protein 3
LRRC4B leucine rich repeat containing 4B
LSM6 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
MAGEA5 melanoma antigen family A5
MARCKSL1 MARCKS-like 1
MAX MYC associated factor X
MDFI MyoD family inhibitor
MEIS3 Meis homeobox 3
MGC16142 uncharacterized protein MGC16142
MIIP migration and invasion inhibitory protein
MKRN3 makorin ring finger protein 3
MOS v-mos Moloney murine sarcoma viral oncogene homolog
MRM1 mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
MRS2P2 MRS2 pseudogene 2
MSI1 musashi RNA-binding protein 1
MUM1 melanoma associated antigen (mutated) 1
NAA60 N(alpha)-acetyltransferase 60, NatF catalytic subunit
NCKAP5L NCK-associated protein 5-like
NCR1 natural cytotoxicity triggering receptor 1
NELFA negative elongation factor complex member A
NEU4 sialidase 4
NME4 NME/NM23 nucleoside diphosphate kinase 4
NOVA2 neuro-oncological ventral antigen 2
NR2F1 nuclear receptor subfamily 2, group F, member 1
NTNG2 netrin G2
NXN nucleoredoxin
OR10Q1 olfactory receptor, family 10, subfamily Q, member 1
OR1J1 olfactory receptor, family 1, subfamily J, member 1
OR2M3 olfactory receptor, family 2, subfamily M, member 3
OR2W5 olfactory receptor, family 2, subfamily W, member 5 (gene/pseudogene)
OR3A4P olfactory receptor, family 3, subfamily A, member 4 pseudogene
OR51B5 olfactory receptor, family 51, subfamily B, member 5
OR51T1 olfactory receptor, family 51, subfamily T, member 1
OR52D1 olfactory receptor, family 52, subfamily D, member 1
OR52K2 olfactory receptor, family 52, subfamily K, member 2
OR5D13 olfactory receptor, family 5, subfamily D, member 13 (gene/pseudogene)
OTUD5 OTU deubiquitinase 5
OXT oxytocin/neurophysin I prepropeptide
PAF1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
PAFAH1B3 platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)
PAGE2B P antigen family, member 2B
PATZ1 POZ (BTB) and AT hook containing zinc finger 1
PCDHGA7 protocadherin gamma subfamily A, 7
PDE9A phosphodiesterase 9A
PDILT protein disulfide isomerase-like, testis expressed
PDZRN4 PDZ domain containing ring finger 4
PEX14 peroxisomal biogenesis factor 14
PEX6 peroxisomal biogenesis factor 6
PFKL phosphofructokinase, liver
PFN3 profilin 3
PGPEP1L pyroglutamyl-peptidase I-like
PHF23 PHD finger protein 23
PIH1D1 PIH1 domain containing 1
PMCHL2 pro-melanin-concentrating hormone-like 2, pseudogene
POU1F1 POU class 1 homeobox 1
POU2F1 POU class 2 homeobox 1
PPAN-P2RY11 PPAN-P2RY11 readthrough
PQBP1 polyglutamine binding protein 1
PRKACG protein kinase, cAMP-dependent, catalytic, gamma
PRMT1 protein arginine methyltransferase 1
PRPF31 pre-mRNA processing factor 31
PTH parathyroid hormone
PTOV1 prostate tumor overexpressed 1
PTPRS protein tyrosine phosphatase, receptor type, S
PTTG1IP pituitary tumor-transforming 1 interacting protein
PWP2 PWP2 periodic tryptophan protein homolog (yeast)
RANBP3 RAN binding protein 3
RASL10A RAS-like, family 10, member A
RBM10 RNA binding motif protein 10
RBM4 RNA binding motif protein 4
RBMX2 RNA binding motif protein, X-linked 2
RCOR2 REST corepressor 2
REXO4 REX4, RNA exonuclease 4 homolog (S. cerevisiae)
RNF215 ring finger protein 215
RNF5P1 ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1
RPL13A ribosomal protein L13a
RPL13AP20 ribosomal protein L13a pseudogene 20
RPL22 ribosomal protein L22
RPL3 ribosomal protein L3
RPRM reprimo, TP53 dependent G2 arrest mediator candidate
RPS9 ribosomal protein S9
RRP1 ribosomal RNA processing 1
RSPH6A radial spoke head 6 homolog A (Chlamydomonas)
RYR1 ryanodine receptor 1 (skeletal)
SAFB scaffold attachment factor B
SAMD1 sterile alpha motif domain containing 1
SAMD11 sterile alpha motif domain containing 11
SCARNA21 small Cajal body-specific RNA 21
SERF1A small EDRK-rich factor 1A (telomeric)
SIGLEC16 sialic acid binding Ig-like lectin 16 (gene/pseudogene)
SIRT4 sirtuin 4
SLC25A1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1
SLC35E4 solute carrier family 35, member E4
SMAD7 SMAD family member 7
SMCP sperm mitochondria-associated cysteine-rich protein
SNORA56 small nucleolar RNA, H/ACA box 56
SOX12 SRY (sex determining region Y)-box 12
SOX15 SRY (sex determining region Y)-box 15
SPANXC SPANX family, member C
SPHK2 sphingosine kinase 2
SPRR4 small proline-rich protein 4
SRRM5 serine/arginine repetitive matrix 5
STRIP1 striatin interacting protein 1
SULF2 sulfatase 2
SURF6 surfeit 6
SYCP3 synaptonemal complex protein 3
SYMPK symplekin
SYNDIG1 synapse differentiation inducing 1
TBC1D17 TBC1 domain family, member 17
TBKBP1 TBK1 binding protein 1
TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box)
TCOF1 Treacher Collins-Franceschetti syndrome 1
TFAP4 transcription factor AP-4 (activating enhancer binding protein 4)
TNFRSF8 tumor necrosis factor receptor superfamily, member 8
TRIM50 tripartite motif containing 50
TRIM62 tripartite motif containing 62
TTYH1 tweety family member 1
UBE2G2 ubiquitin-conjugating enzyme E2G 2
UBTF upstream binding transcription factor, RNA polymerase I
UCMA upper zone of growth plate and cartilage matrix associated
USP20 ubiquitin specific peptidase 20
VPS37D vacuolar protein sorting 37 homolog D (S. cerevisiae)
VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae)
VWCE von Willebrand factor C and EGF domains
WDR86 WD repeat domain 86
WRNIP1 Werner helicase interacting protein 1
XAGE3 X antigen family, member 3
XRCC1 X-ray repair complementing defective repair in Chinese hamster cells 1
ZBTB12 zinc finger and BTB domain containing 12
ZBTB17 zinc finger and BTB domain containing 17
ZC3H10 zinc finger CCCH-type containing 10
ZC3H4 zinc finger CCCH-type containing 4
ZDHHC19 zinc finger, DHHC-type containing 19
ZMAT2 zinc finger, matrin-type 2
ZNF362 zinc finger protein 362
ZNF428 zinc finger protein 428
ZNF48 zinc finger protein 48
ZNF574 zinc finger protein 574
ZNF629 zinc finger protein 629

low expression

Symbol Name
BTBD1 BTB (POZ) domain containing 1
CCDC25 coiled-coil domain containing 25
DSCR3 Down syndrome critical region 3
IFNAR1 interferon (alpha, beta and omega) receptor 1
PARP8 poly (ADP-ribose) polymerase family, member 8
VWA8 von Willebrand factor A domain containing 8