Brain Lower Grade Glioma_LGG_TCGA-HT-8012-01A-11R-2403-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

373 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-HT-8012-01A-11R-2403-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABCG1 ATP-binding cassette, sub-family G (WHITE), member 1
ADAM29 ADAM metallopeptidase domain 29
ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif, 10
ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif, 13
ADGRF5 adhesion G protein-coupled receptor F5
ALK anaplastic lymphoma receptor tyrosine kinase
AMER3 APC membrane recruitment protein 3
AMH anti-Mullerian hormone
AMZ1 archaelysin family metallopeptidase 1
ANAPC2 anaphase promoting complex subunit 2
ANGEL1 angel homolog 1 (Drosophila)
ANKRD31 ankyrin repeat domain 31
ANKRD36B ankyrin repeat domain 36B
APC2 adenomatosis polyposis coli 2
ARHGEF2 Rho/Rac guanine nucleotide exchange factor (GEF) 2
ARHGEF38 Rho guanine nucleotide exchange factor (GEF) 38
ASIC1 acid sensing (proton gated) ion channel 1
ATCAY ataxia, cerebellar, Cayman type
ATP10A ATPase, class V, type 10A
ATP6V1B1 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2
BAZ2A bromodomain adjacent to zinc finger domain, 2A
BCL9L B-cell CLL/lymphoma 9-like
BMP2 bone morphogenetic protein 2
BPI bactericidal/permeability-increasing protein
BRPF3 bromodomain and PHD finger containing, 3
BTNL2 butyrophilin-like 2
BTNL9 butyrophilin-like 9
C1ORF111 chromosome 1 open reading frame 111
C2ORF27B chromosome 2 open reading frame 27B
C4ORF45 chromosome 4 open reading frame 45
CA10 carbonic anhydrase X
CACNG2 calcium channel, voltage-dependent, gamma subunit 2
CACNG4 calcium channel, voltage-dependent, gamma subunit 4
CALCOCO1 calcium binding and coiled-coil domain 1
CAMSAP3 calmodulin regulated spectrin-associated protein family, member 3
CAPN11 calpain 11
CBS cystathionine-beta-synthase
CCDC120 coiled-coil domain containing 120
CCDC79 coiled-coil domain containing 79
CCL1 chemokine (C-C motif) ligand 1
CCNG2 cyclin G2
CCNI2 cyclin I family, member 2
CD82 CD82 molecule
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase
CECR6 cat eye syndrome chromosome region, candidate 6
CELP carboxyl ester lipase pseudogene
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal)
CLEC4F C-type lectin domain family 4, member F
CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand
CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3
CNOT6L CCR4-NOT transcription complex, subunit 6-like
CORO7 coronin 7
CSMD3 CUB and Sushi multiple domains 3
CSNK1E casein kinase 1, epsilon
CST9 cystatin 9 (testatin)
CT45A5 cancer/testis antigen family 45, member A5
CTSO cathepsin O
CUZD1 CUB and zona pellucida-like domains 1
CXADRP3 coxsackie virus and adenovirus receptor pseudogene 3
DACH1 dachshund family transcription factor 1
DACH2 dachshund family transcription factor 2
DCAF12L2 DDB1 and CUL4 associated factor 12-like 2
DEGS2 delta(4)-desaturase, sphingolipid 2
DLL1 delta-like 1 (Drosophila)
DLL3 delta-like 3 (Drosophila)
DOK4 docking protein 4
DSCAM Down syndrome cell adhesion molecule
DUSP4 dual specificity phosphatase 4
DUSP9 dual specificity phosphatase 9
EBF4 early B-cell factor 4
ECE2 endothelin converting enzyme 2
EDA ectodysplasin A
ELFN2 extracellular leucine-rich repeat and fibronectin type III domain containing 2
EML5 echinoderm microtubule associated protein like 5
EPB41L4A erythrocyte membrane protein band 4.1 like 4A
EPB41L4A-AS1 EPB41L4A antisense RNA 1
EPN2 epsin 2
ERCC3 excision repair cross-complementation group 3
ETV4 ets variant 4
EVI5L ecotropic viral integration site 5-like
EXOSC6 exosome component 6
FAM109A family with sequence similarity 109, member A
FAM155A family with sequence similarity 155, member A
FAM171A2 family with sequence similarity 171, member A2
FAM24B family with sequence similarity 24, member B
FAM66A family with sequence similarity 66, member A
FAM90A7P putative protein FAM90A7
FBXW10 F-box and WD repeat domain containing 10
FCHO2 FCH domain only 2
FIGLA folliculogenesis specific basic helix-loop-helix
FIGNL2 fidgetin-like 2
FLJ42627 uncharacterized LOC645644
FLYWCH1 FLYWCH-type zinc finger 1
FOXP4 forkhead box P4
FRMPD1 FERM and PDZ domain containing 1
GAGE12J G antigen 12J
GAL3ST1 galactose-3-O-sulfotransferase 1
GALNTL6 polypeptide N-acetylgalactosaminyltransferase-like 6
GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
GFRA1 GDNF family receptor alpha 1
GK5 glycerol kinase 5 (putative)
GLDC glycine dehydrogenase (decarboxylating)
GLRA1 glycine receptor, alpha 1
GPCPD1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
GPR119 G protein-coupled receptor 119
GPR148 G protein-coupled receptor 148
GPR27 G protein-coupled receptor 27
GPR45 G protein-coupled receptor 45
GPRIN1 G protein regulated inducer of neurite outgrowth 1
GPX6 glutathione peroxidase 6
GRIA2 glutamate receptor, ionotropic, AMPA 2
GRID2IP glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein
GRIN2D glutamate receptor, ionotropic, N-methyl D-aspartate 2D
GRIN3A glutamate receptor, ionotropic, N-methyl-D-aspartate 3A
GRIP2 glutamate receptor interacting protein 2
GTF2I general transcription factor IIi
H2BFM H2B histone family, member M
HAS1 hyaluronan synthase 1
HCN3 hyperpolarization activated cyclic nucleotide gated potassium channel 3
HDAC10 histone deacetylase 10
HIP1R huntingtin interacting protein 1 related
HSD17B13 hydroxysteroid (17-beta) dehydrogenase 13
HSF4 heat shock transcription factor 4
HSFX2 heat shock transcription factor family, X linked 2
ICA1 islet cell autoantigen 1, 69kDa
IGBP1 immunoglobulin (CD79A) binding protein 1
IL11RA interleukin 11 receptor, alpha
IL27RA interleukin 27 receptor, alpha
INE1 inactivation escape 1 (non-protein coding)
INTS4 integrator complex subunit 4
KCNH6 potassium channel, voltage gated eag related subfamily H, member 6
KCNJ11 potassium channel, inwardly rectifying subfamily J, member 11
KCNT2 potassium channel, sodium activated subfamily T, member 2
KDM6A lysine (K)-specific demethylase 6A
KIAA1143 KIAA1143
KLC4 kinesin light chain 4
KRT37 keratin 37, type I
KRTAP10-6 keratin associated protein 10-6
KRTAP26-1 keratin associated protein 26-1
KRTAP4-7 keratin associated protein 4-7
KRTAP5-7 keratin associated protein 5-7
L3MBTL1 l(3)mbt-like 1 (Drosophila)
LCE1B late cornified envelope 1B
LCE1F late cornified envelope 1F
LHFPL4 lipoma HMGIC fusion partner-like 4
LHX5 LIM homeobox 5
LIAS lipoic acid synthetase
LINC00158 long intergenic non-protein coding RNA 158
LINC00176 long intergenic non-protein coding RNA 176
LINC00235 long intergenic non-protein coding RNA 235
LINC01599 long intergenic non-protein coding RNA 1599
LKAAEAR1 LKAAEAR motif containing 1
LMBR1L limb development membrane protein 1-like
LOC100270804 uncharacterized LOC100270804
LOC646214 p21 protein (Cdc42/Rac)-activated kinase 2 pseudogene
LOR loricrin
LPPR2 lipid phosphate phosphatase-related protein type 2
LRIT3 leucine-rich repeat, immunoglobulin-like and transmembrane domains 3
LRRC24 leucine rich repeat containing 24
LRRN1 leucine rich repeat neuronal 1
LRRN4 leucine rich repeat neuronal 4
MADCAM1 mucosal vascular addressin cell adhesion molecule 1
MARCH4 membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase
MAST1 microtubule associated serine/threonine kinase 1
MATN3 matrilin 3
MBD1 methyl-CpG binding domain protein 1
MBD3L5 methyl-CpG binding domain protein 3-like 5
MIAT myocardial infarction associated transcript (non-protein coding)
MIDN midnolin
MIEF2 mitochondrial elongation factor 2
MIR7-3HG MIR7-3 host gene
MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
MLLT4-AS1 MLLT4 antisense RNA 1 (head to head)
MPP3 membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)
MSX2P1 msh homeobox 2 pseudogene 1
MYO18B myosin XVIIIB
MYOD1 myogenic differentiation 1
MYT1 myelin transcription factor 1
N4BP2L1 NEDD4 binding protein 2-like 1
NAAA N-acylethanolamine acid amidase
NAT16 N-acetyltransferase 16 (GCN5-related, putative)
NKX6-3 NK6 homeobox 3
NLGN2 neuroligin 2
NLGN3 neuroligin 3
NLRP13 NLR family, pyrin domain containing 13
NOG noggin
NOMO3 NODAL modulator 3
NOTCH1 notch 1
NOTUM notum pectinacetylesterase homolog (Drosophila)
NOXO1 NADPH oxidase organizer 1
NPHP3 nephronophthisis 3 (adolescent)
NRDE2 NRDE-2, necessary for RNA interference, domain containing
NRTN neurturin
NRXN2 neurexin 2
NUMA1 nuclear mitotic apparatus protein 1
NUTM2D NUT family member 2D
NXF4 nuclear RNA export factor 4 pseudogene
OGT O-linked N-acetylglucosamine (GlcNAc) transferase
OLIG1 oligodendrocyte transcription factor 1
OOEP oocyte expressed protein
OR10A6 olfactory receptor, family 10, subfamily A, member 6 (gene/pseudogene)
OR10G3 olfactory receptor, family 10, subfamily G, member 3
OR2AT4 olfactory receptor, family 2, subfamily AT, member 4
OR2Z1 olfactory receptor, family 2, subfamily Z, member 1
OR52B6 olfactory receptor, family 52, subfamily B, member 6
OR5C1 olfactory receptor, family 5, subfamily C, member 1
OR6T1 olfactory receptor, family 6, subfamily T, member 1
OR8B2 olfactory receptor, family 8, subfamily B, member 2
PCBP3 poly(rC) binding protein 3
PCDH20 protocadherin 20
PCDHA1 protocadherin alpha 1
PCDHA2 protocadherin alpha 2
PCDHB5 protocadherin beta 5
PCDHGA10 protocadherin gamma subfamily A, 10
PCDHGA6 protocadherin gamma subfamily A, 6
PCDHGB7 protocadherin gamma subfamily B, 7
PCSK1N proprotein convertase subtilisin/kexin type 1 inhibitor
PCSK4 proprotein convertase subtilisin/kexin type 4
PDE6C phosphodiesterase 6C, cGMP-specific, cone, alpha prime
PGAP1 post-GPI attachment to proteins 1
PGAP3 post-GPI attachment to proteins 3
PGLYRP3 peptidoglycan recognition protein 3
PHIP pleckstrin homology domain interacting protein
PIGZ phosphatidylinositol glycan anchor biosynthesis, class Z
PIK3IP1 phosphoinositide-3-kinase interacting protein 1
PITX3 paired-like homeodomain 3
PLEKHM1P pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene
PNPLA7 patatin-like phospholipase domain containing 7
POLI polymerase (DNA directed) iota
POTEC POTE ankyrin domain family, member C
PPP3R2 protein phosphatase 3, regulatory subunit B, beta
PPT2 palmitoyl-protein thioesterase 2
PRAMEF6 PRAME family member 6
PRKAG3 protein kinase, AMP-activated, gamma 3 non-catalytic subunit
PRR21 proline rich 21
PRR23B proline rich 23B
PTGFR prostaglandin F receptor (FP)
RAB24 RAB24, member RAS oncogene family
RAB31 RAB31, member RAS oncogene family
RAI1 retinoic acid induced 1
RAPSN receptor-associated protein of the synapse
RASAL2 RAS protein activator like 2
RAX2 retina and anterior neural fold homeobox 2
RGR retinal G protein coupled receptor
RHBDL1 rhomboid, veinlet-like 1 (Drosophila)
RNASE13 ribonuclease, RNase A family, 13 (non-active)
RNF44 ring finger protein 44
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila)
RSPO4 R-spondin 4
RTKN rhotekin
RTP5 receptor (chemosensory) transporter protein 5 (putative)
SAG S-antigen; retina and pineal gland (arrestin)
SAGE1 sarcoma antigen 1
SAMD14 sterile alpha motif domain containing 14
SATB1 SATB homeobox 1
SCARNA15 small Cajal body-specific RNA 15
SCEL sciellin
SEMA6B sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
SETDB2 SET domain, bifurcated 2
SEZ6L2 seizure related 6 homolog (mouse)-like 2
SHC2 SHC (Src homology 2 domain containing) transforming protein 2
SHISA7 shisa family member 7
SIDT2 SID1 transmembrane family, member 2
SLC16A1 solute carrier family 16 (monocarboxylate transporter), member 1
SLC16A14 solute carrier family 16, member 14
SLC19A3 solute carrier family 19 (thiamine transporter), member 3
SLC22A17 solute carrier family 22, member 17
SLC24A3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
SLC25A27 solute carrier family 25, member 27
SLC26A1 solute carrier family 26 (anion exchanger), member 1
SLC2A11 solute carrier family 2 (facilitated glucose transporter), member 11
SLC34A3 solute carrier family 34 (type II sodium/phosphate cotransporter), member 3
SLC8A3 solute carrier family 8 (sodium/calcium exchanger), member 3
SLIT1 slit homolog 1 (Drosophila)
SMCR5 Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding)
SMPD3 sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)
SNORA15 small nucleolar RNA, H/ACA box 15
SNORA16B small nucleolar RNA, H/ACA box 16B
SOX12 SRY (sex determining region Y)-box 12
SOX8 SRY (sex determining region Y)-box 8
SPATA9 spermatogenesis associated 9
SPHKAP SPHK1 interactor, AKAP domain containing
SPIN3 spindlin family, member 3
SPINK5 serine peptidase inhibitor, Kazal type 5
SPINK7 serine peptidase inhibitor, Kazal type 7 (putative)
SPIRE2 spire-type actin nucleation factor 2
SUGT1P3 SUGT1 pseudogene 3
SYCE3 synaptonemal complex central element protein 3
SYT17 synaptotagmin XVII
TACC2 transforming, acidic coiled-coil containing protein 2
TBKBP1 TBK1 binding protein 1
TDH L-threonine dehydrogenase (pseudogene)
TEK TEK tyrosine kinase, endothelial
THRA thyroid hormone receptor, alpha
TIGD3 tigger transposable element derived 3
TLE2 transducin-like enhancer of split 2
TLE6 transducin-like enhancer of split 6
TMEM121 transmembrane protein 121
TMEM175 transmembrane protein 175
TMEM38B transmembrane protein 38B
TMEM45B transmembrane protein 45B
TMEM8B transmembrane protein 8B
TMIGD1 transmembrane and immunoglobulin domain containing 1
TNK2 tyrosine kinase, non-receptor, 2
TRPC3 transient receptor potential cation channel, subfamily C, member 3
TSPY26P testis specific protein, Y-linked 26, pseudogene
TTC14 tetratricopeptide repeat domain 14
TXNDC16 thioredoxin domain containing 16
UCKL1-AS1 UCKL1 antisense RNA 1
UNC5A unc-5 homolog A (C. elegans)
UNC79 unc-79 homolog (C. elegans)
UNKL unkempt family zinc finger-like
USHBP1 Usher syndrome 1C binding protein 1
USP27X ubiquitin specific peptidase 27, X-linked
VAX2 ventral anterior homeobox 2
VENTXP7 VENT homeobox pseudogene 7
VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
VN1R2 vomeronasal 1 receptor 2
VPS37D vacuolar protein sorting 37 homolog D (S. cerevisiae)
VWA2 von Willebrand factor A domain containing 2
VWA5A von Willebrand factor A domain containing 5A
WFIKKN1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1
XIST X inactive specific transcript (non-protein coding)
XKR7 XK, Kell blood group complex subunit-related family, member 7
YPEL3 yippee-like 3 (Drosophila)
YPEL4 yippee-like 4 (Drosophila)
ZC2HC1A zinc finger, C2HC-type containing 1A
ZCCHC24 zinc finger, CCHC domain containing 24
ZNF219 zinc finger protein 219
ZNF252P-AS1 ZNF252P antisense RNA 1
ZNF747 zinc finger protein 747
ZNF843 zinc finger protein 843
ZSCAN10 zinc finger and SCAN domain containing 10
ZSWIM4 zinc finger, SWIM-type containing 4

low expression

Symbol Name
ADAL adenosine deaminase-like
ASB7 ankyrin repeat and SOCS box containing 7
BTBD1 BTB (POZ) domain containing 1
C15ORF40 chromosome 15 open reading frame 40
CCNDBP1 cyclin D-type binding-protein 1
COA7 cytochrome c oxidase assembly factor 7 (putative)
COPS2 COP9 signalosome subunit 2
CRTC3 CREB regulated transcription coactivator 3
DPH6 diphthamine biosynthesis 6
EFTUD1 elongation factor Tu GTP binding domain containing 1
EID1 EP300 interacting inhibitor of differentiation 1
EIF3J eukaryotic translation initiation factor 3, subunit J
EMC4 ER membrane protein complex subunit 4
FAM103A1 family with sequence similarity 103, member A1
GALK2 galactokinase 2
GTF2A2 general transcription factor IIA, 2, 12kDa
HEXA hexosaminidase A (alpha polypeptide)
MFAP1 microfibrillar-associated protein 1
MORF4L1 mortality factor 4 like 1
MPI mannose phosphate isomerase
NDNL2 necdin-like 2
NIPA2 non imprinted in Prader-Willi/Angelman syndrome 2
OAZ2 ornithine decarboxylase antizyme 2
RAB11A RAB11A, member RAS oncogene family
RMDN3 regulator of microtubule dynamics 3
SNAPC5 small nuclear RNA activating complex, polypeptide 5, 19kDa
SNUPN snurportin 1
SPG21 spastic paraplegia 21 (autosomal recessive, Mast syndrome)
SRP14 signal recognition particle 14kDa (homologous Alu RNA binding protein)
THUMPD2 THUMP domain containing 2
TMEM62 transmembrane protein 62
UBE3A ubiquitin protein ligase E3A
VPS18 vacuolar protein sorting 18 homolog (S. cerevisiae)
VPS39 vacuolar protein sorting 39 homolog (S. cerevisiae)
VWA9 von Willebrand factor A domain containing 9
WDR61 WD repeat domain 61
ZFAND6 zinc finger, AN1-type domain 6