Brain Lower Grade Glioma_LGG_TCGA-HT-7879-01A-11R-2403-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

419 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-HT-7879-01A-11R-2403-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABCC10 ATP-binding cassette, sub-family C (CFTR/MRP), member 10
ABCC2 ATP-binding cassette, sub-family C (CFTR/MRP), member 2
ABCC6P1 ATP-binding cassette, sub-family C, member 6 pseudogene 1 (functional)
ACAP3 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
ACSM2B acyl-CoA synthetase medium-chain family member 2B
ACTL7A actin-like 7A
ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif, 10
ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12
ADGRE4P adhesion G protein-coupled receptor E4, pseudogene
ADK adenosine kinase
ADORA2A-AS1 ADORA2A antisense RNA 1
AFF2 AF4/FMR2 family, member 2
AGAP4 ArfGAP with GTPase domain, ankyrin repeat and PH domain 4
AGAP6 ArfGAP with GTPase domain, ankyrin repeat and PH domain 6
AGER advanced glycosylation end product-specific receptor
AGO3 argonaute RISC catalytic component 3
AGRN agrin
AHSA2 AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)
AIRE autoimmune regulator
AKAP13 A kinase (PRKA) anchor protein 13
AKR7L aldo-keto reductase family 7-like (gene/pseudogene)
ALDH8A1 aldehyde dehydrogenase 8 family, member A1
AMH anti-Mullerian hormone
ANKRD6 ankyrin repeat domain 6
ANKRD9 ankyrin repeat domain 9
ANO8 anoctamin 8
AP1G2 adaptor-related protein complex 1, gamma 2 subunit
APOBEC2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2
ARHGAP6 Rho GTPase activating protein 6
ARHGEF10L Rho guanine nucleotide exchange factor (GEF) 10-like
ARHGEF17 Rho guanine nucleotide exchange factor (GEF) 17
ARHGEF4 Rho guanine nucleotide exchange factor (GEF) 4
ARL6IP6 ADP-ribosylation factor-like 6 interacting protein 6
ARVCF armadillo repeat gene deleted in velocardiofacial syndrome
ASAP1-IT1 ASAP1 intronic transcript 1
ASB17 ankyrin repeat and SOCS box containing 17
ASIP agouti signaling protein
B3GALT5 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
BRD1 bromodomain containing 1
BRD7P3 bromodomain containing 7 pseudogene 3
BTBD17 BTB (POZ) domain containing 17
C12ORF77 chromosome 12 open reading frame 77
C14ORF105 chromosome 14 open reading frame 105
C14ORF132 chromosome 14 open reading frame 132
C15ORF52 chromosome 15 open reading frame 52
C15ORF62 chromosome 15 open reading frame 62
C1ORF100 chromosome 1 open reading frame 100
C1ORF220 chromosome 1 open reading frame 220
C1ORF94 chromosome 1 open reading frame 94
C4ORF26 chromosome 4 open reading frame 26
C5ORF38 chromosome 5 open reading frame 38
C5ORF42 chromosome 5 open reading frame 42
CACNA2D4 calcium channel, voltage-dependent, alpha 2/delta subunit 4
CAPN15 calpain 15
CAPRIN2 caprin family member 2
CARD14 caspase recruitment domain family, member 14
CATSPER4 cation channel, sperm associated 4
CC2D2B coiled-coil and C2 domain containing 2B
CCDC142 coiled-coil domain containing 142
CCDC183 coiled-coil domain containing 183
CCDC57 coiled-coil domain containing 57
CCDC7 coiled-coil domain containing 7
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDH7 cadherin 7, type 2
CELP carboxyl ester lipase pseudogene
CEP192 centrosomal protein 192kDa
CHKB-CPT1B CHKB-CPT1B readthrough (NMD candidate)
CLASRP CLK4-associating serine/arginine rich protein
CLDN17 claudin 17
CLK1 CDC-like kinase 1
CMTM2 CKLF-like MARVEL transmembrane domain containing 2
CNGA1 cyclic nucleotide gated channel alpha 1
CNKSR1 connector enhancer of kinase suppressor of Ras 1
CNTN3 contactin 3 (plasmacytoma associated)
COL4A6 collagen, type IV, alpha 6
COL6A4P2 collagen, type VI, alpha 4 pseudogene 2
COX8C cytochrome c oxidase subunit VIIIC
CRIPAK cysteine-rich PAK1 inhibitor
CROCC ciliary rootlet coiled-coil, rootletin
CROCCP3 ciliary rootlet coiled-coil, rootletin pseudogene 3
CSMD2 CUB and Sushi multiple domains 2
CSNK1G2-AS1 CSNK1G2 antisense RNA 1
CSTL1 cystatin-like 1
CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2
CYP27C1 cytochrome P450, family 27, subfamily C, polypeptide 1
CYP2W1 cytochrome P450, family 2, subfamily W, polypeptide 1
DAAM2 dishevelled associated activator of morphogenesis 2
DAPK1 death-associated protein kinase 1
DCLK2 doublecortin-like kinase 2
DEFB132 defensin, beta 132
DERA deoxyribose-phosphate aldolase (putative)
DICER1 dicer 1, ribonuclease type III
DLX4 distal-less homeobox 4
DMPK dystrophia myotonica-protein kinase
DMWD dystrophia myotonica, WD repeat containing
DNAH1 dynein, axonemal, heavy chain 1
DNAH10 dynein, axonemal, heavy chain 10
DNASE1L2 deoxyribonuclease I-like 2
DNHD1 dynein heavy chain domain 1
DPP10 dipeptidyl-peptidase 10 (non-functional)
DQX1 DEAQ box RNA-dependent ATPase 1
DST dystonin
DTX4 deltex 4, E3 ubiquitin ligase
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3
EP400NL EP400 N-terminal like
EPX eosinophil peroxidase
EVA1A eva-1 homolog A (C. elegans)
EVX1 even-skipped homeobox 1
FAM106CP family with sequence similarity 106, member C, pseudogene
FAM157A family with sequence similarity 157, member A
FAM160B2 family with sequence similarity 160, member B2
FAM182A family with sequence similarity 182, member A
FAM182B family with sequence similarity 182, member B
FAM27C family with sequence similarity 27, member C
FAM60A family with sequence similarity 60, member A
FAM83E family with sequence similarity 83, member E
FANCD2OS FANCD2 opposite strand
FBRSL1 fibrosin-like 1
FGFR4 fibroblast growth factor receptor 4
FLJ13224 uncharacterized LOC79857
FLJ34503 uncharacterized FLJ34503
FNBP4 formin binding protein 4
FOXP2 forkhead box P2
FRG2B FSHD region gene 2 family, member B
FSD1L fibronectin type III and SPRY domain containing 1-like
FSTL5 follistatin-like 5
GABRR2 gamma-aminobutyric acid (GABA) A receptor, rho 2
GAGE12J G antigen 12J
GALNT8 polypeptide N-acetylgalactosaminyltransferase 8
GALNTL6 polypeptide N-acetylgalactosaminyltransferase-like 6
GATA3 GATA binding protein 3
GBP7 guanylate binding protein 7
GCM2 glial cells missing homolog 2 (Drosophila)
GDF7 growth differentiation factor 7
GINS3 GINS complex subunit 3 (Psf3 homolog)
GJB7 gap junction protein, beta 7, 25kDa
GLTPD2 glycolipid transfer protein domain containing 2
GLTSCR1 glioma tumor suppressor candidate region gene 1
GOLGA6A golgin A6 family, member A
GOLGA6B golgin A6 family, member B
GOLGA6C golgin A6 family, member C
GOLGA6L10 golgin A6 family-like 10
GOLGA6L5P golgin A6 family-like 5, pseudogene
GOLGA8A golgin A8 family, member A
GOLGA8B golgin A8 family, member B
GOLGA8IP golgin A8 family, member I, pseudogene
GP1BA glycoprotein Ib (platelet), alpha polypeptide
GPR27 G protein-coupled receptor 27
GPR35 G protein-coupled receptor 35
GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2
GPX6 glutathione peroxidase 6
GRHL3 grainyhead-like 3 (Drosophila)
GRK7 G protein-coupled receptor kinase 7
GRXCR1 glutaredoxin, cysteine rich 1
GSC2 goosecoid homeobox 2
GTF2H4 general transcription factor IIH, polypeptide 4, 52kDa
GUCY2EP guanylate cyclase 2E, pseudogene
HBBP1 hemoglobin, beta pseudogene 1
HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2
HES4 hes family bHLH transcription factor 4
HIC2 hypermethylated in cancer 2
HRH4 histamine receptor H4
HULC hepatocellular carcinoma up-regulated long non-coding RNA
HYMAI hydatidiform mole associated and imprinted (non-protein coding)
IDUA iduronidase, alpha-L-
IFNA5 interferon, alpha 5
IFT140 intraflagellar transport 140
IGDCC3 immunoglobulin superfamily, DCC subclass, member 3
IKBKAP inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein
IL12A interleukin 12A
IL17RD interleukin 17 receptor D
INS-IGF2 INS-IGF2 readthrough
INTS3 integrator complex subunit 3
IPW imprinted in Prader-Willi syndrome (non-protein coding)
IQCF6 IQ motif containing F6
ITIH4 inter-alpha-trypsin inhibitor heavy chain family, member 4
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2
IZUMO1 izumo sperm-egg fusion 1
KCNK4 potassium channel, two pore domain subfamily K, member 4
KCTD15 potassium channel tetramerization domain containing 15
KCTD5 potassium channel tetramerization domain containing 5
KDM5D lysine (K)-specific demethylase 5D
KIAA0753 KIAA0753
KLHL31 kelch-like family member 31
KLHL42 kelch-like family member 42
KLK14 kallikrein-related peptidase 14
KNOP1 lysine-rich nucleolar protein 1
KRTAP5-3 keratin associated protein 5-3
LAMA5 laminin, alpha 5
LCE1B late cornified envelope 1B
LINC00028 long intergenic non-protein coding RNA 28
LINC00032 long intergenic non-protein coding RNA 32
LINC00174 long intergenic non-protein coding RNA 174
LINC00235 long intergenic non-protein coding RNA 235
LINC00319 long intergenic non-protein coding RNA 319
LINC00575 long intergenic non-protein coding RNA 575
LINC00593 long intergenic non-protein coding RNA 593
LINC01565 long intergenic non-protein coding RNA 1565
LMX1A LIM homeobox transcription factor 1, alpha
LOC100128573 uncharacterized LOC100128573
LOC100130987 uncharacterized LOC100130987
LOC150776 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene
LOC283332 uncharacterized LOC283332
LOC392196 ubiquitin specific peptidase 17-like family member 2 pseudogene
LOC400794 uncharacterized LOC400794
LOC646471 uncharacterized LOC646471
LOC729603 calcineurin-like EF-hand protein 1 pseudogene
LOC90834
LPL lipoprotein lipase
LPPR3 lipid phosphate phosphatase-related protein type 3
LRCH4 leucine-rich repeats and calponin homology (CH) domain containing 4
LRIT3 leucine-rich repeat, immunoglobulin-like and transmembrane domains 3
LRRC10B leucine rich repeat containing 10B
LRRC52 leucine rich repeat containing 52
LURAP1L leucine rich adaptor protein 1-like
LY6G6C lymphocyte antigen 6 complex, locus G6C
MACF1 microtubule-actin crosslinking factor 1
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3
MAP3K12 mitogen-activated protein kinase kinase kinase 12
MEX3C mex-3 RNA binding family member C
MICALL1 MICAL-like 1
MIIP migration and invasion inhibitory protein
MLIP muscular LMNA-interacting protein
MORN1 MORN repeat containing 1
MS4A14 membrane-spanning 4-domains, subfamily A, member 14
MSANTD2 Myb/SANT-like DNA-binding domain containing 2
MTA1 metastasis associated 1
MTERF2 mitochondrial transcription termination factor 2
MYCL v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog
MYEF2 myelin expression factor 2
MYH3 myosin, heavy chain 3, skeletal muscle, embryonic
MYOD1 myogenic differentiation 1
MZF1 myeloid zinc finger 1
N4BP2L2-IT2 N4BPL2 intronic transcript 2
NEB nebulin
NEIL1 nei endonuclease VIII-like 1 (E. coli)
NEK9 NIMA-related kinase 9
NEURL3 neuralized E3 ubiquitin protein ligase 3
NEUROG3 neurogenin 3
NKPD1 NTPase, KAP family P-loop domain containing 1
NKTR natural killer cell triggering receptor
NMB neuromedin B
NPHP4 nephronophthisis 4
NRTN neurturin
NTN5 netrin 5
NUTM1 NUT midline carcinoma, family member 1
NXF3 nuclear RNA export factor 3
ODF4 outer dense fiber of sperm tails 4
OPN1MW opsin 1 (cone pigments), medium-wave-sensitive
OR1Q1 olfactory receptor, family 1, subfamily Q, member 1
OR4M2 olfactory receptor, family 4, subfamily M, member 2
OR51B5 olfactory receptor, family 51, subfamily B, member 5
OR51G2 olfactory receptor, family 51, subfamily G, member 2
OR52A4P olfactory receptor, family 52, subfamily A, member 4, pseudogene
OR52E2 olfactory receptor, family 52, subfamily E, member 2
OR5AK2 olfactory receptor, family 5, subfamily AK, member 2
OR5B17 olfactory receptor, family 5, subfamily B, member 17
OR5B3 olfactory receptor, family 5, subfamily B, member 3
OR6Q1 olfactory receptor, family 6, subfamily Q, member 1 (gene/pseudogene)
OR6V1 olfactory receptor, family 6, subfamily V, member 1
OR8S1 olfactory receptor, family 8, subfamily S, member 1
OVCH1 ovochymase 1
P2RY8 purinergic receptor P2Y, G-protein coupled, 8
PAXBP1 PAX3 and PAX7 binding protein 1
PCDHGA3 protocadherin gamma subfamily A, 3
PCSK6 proprotein convertase subtilisin/kexin type 6
PCTP phosphatidylcholine transfer protein
PDCD6IP programmed cell death 6 interacting protein
PDE3A phosphodiesterase 3A, cGMP-inhibited
PDE8A phosphodiesterase 8A
PGA3 pepsinogen 3, group I (pepsinogen A)
PGBD2 piggyBac transposable element derived 2
PI4KAP2 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2
PLEKHN1 pleckstrin homology domain containing, family N member 1
PLXNB1 plexin B1
PPBPP2 pro-platelet basic protein pseudogene 2
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
PPP1R14D protein phosphatase 1, regulatory (inhibitor) subunit 14D
PPP1R2P1 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 1
PRDM15 PR domain containing 15
PRPF39 pre-mRNA processing factor 39
PRR5L proline rich 5 like
PRSS35 protease, serine, 35
PRTG protogenin
PTPN21 protein tyrosine phosphatase, non-receptor type 21
PWAR5 Prader Willi/Angelman region RNA 5
RANBP10 RAN binding protein 10
RASL10A RAS-like, family 10, member A
RBM5 RNA binding motif protein 5
RBM6 RNA binding motif protein 6
RDH16 retinol dehydrogenase 16 (all-trans)
REM2 RAS (RAD and GEM)-like GTP binding 2
RET ret proto-oncogene
RHPN2 rhophilin, Rho GTPase binding protein 2
RNF151 ring finger protein 151
RNF183 ring finger protein 183
RNF39 ring finger protein 39
ROCK1 Rho-associated, coiled-coil containing protein kinase 1
RPE65 retinal pigment epithelium-specific protein 65kDa
RPL10L ribosomal protein L10-like
RPS15AP10 ribosomal protein S15a pseudogene 10
RPUSD1 RNA pseudouridylate synthase domain containing 1
RRH retinal pigment epithelium-derived rhodopsin homolog
SAMD11 sterile alpha motif domain containing 11
SCGB1C1 secretoglobin, family 1C, member 1
SCHIP1 schwannomin interacting protein 1
SCN11A sodium channel, voltage gated, type XI alpha subunit
SDC4P syndecan 4 pseudogene
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
SETD5 SET domain containing 5
SFSWAP splicing factor, suppressor of white-apricot family
SGSM2 small G protein signaling modulator 2
SH2B2 SH2B adaptor protein 2
SLC10A1 solute carrier family 10 (sodium/bile acid cotransporter), member 1
SLC22A12 solute carrier family 22 (organic anion/urate transporter), member 12
SLC22A20 solute carrier family 22, member 20
SLC22A6 solute carrier family 22 (organic anion transporter), member 6
SLC25A53 solute carrier family 25, member 53
SLC26A1 solute carrier family 26 (anion exchanger), member 1
SLC30A10 solute carrier family 30, member 10
SLC34A3 solute carrier family 34 (type II sodium/phosphate cotransporter), member 3
SLC35E2 solute carrier family 35, member E2
SMTNL1 smoothelin-like 1
SNHG12 small nucleolar RNA host gene 12
SNORA56 small nucleolar RNA, H/ACA box 56
SNORA59B small nucleolar RNA, H/ACA box 59B
SNORA62 small nucleolar RNA, H/ACA box 62
SNORA81 small nucleolar RNA, H/ACA box 81
SNORD116-28 small nucleolar RNA, C/D box 116-28
SNORD116-4 small nucleolar RNA, C/D box 116-4
SNX31 sorting nexin 31
SPANXD SPANX family, member D
SPEG SPEG complex locus
SPON1 spondin 1, extracellular matrix protein
SRD5A2 steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)
SRSF11 serine/arginine-rich splicing factor 11
SSPO SCO-spondin
STK19 serine/threonine kinase 19
STK36 serine/threonine kinase 36
STK38L serine/threonine kinase 38 like
STKLD1 serine/threonine kinase-like domain containing 1
SYCP2L synaptonemal complex protein 2-like
SZT2 seizure threshold 2 homolog (mouse)
TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa
TAS1R2 taste receptor, type 1, member 2
TBC1D29 TBC1 domain family, member 29
TBC1D2B TBC1 domain family, member 2B
TBKBP1 TBK1 binding protein 1
TDRP testis development related protein
TET3 tet methylcytosine dioxygenase 3
TEX40 testis expressed 40
TFAP2E transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon)
TGM1 transglutaminase 1
TLE6 transducin-like enhancer of split 6
TLR9 toll-like receptor 9
TMC1 transmembrane channel-like 1
TMEM252 transmembrane protein 252
TNFRSF13C tumor necrosis factor receptor superfamily, member 13C
TNFRSF25 tumor necrosis factor receptor superfamily, member 25
TNFRSF8 tumor necrosis factor receptor superfamily, member 8
TNRC6A trinucleotide repeat containing 6A
TRIM66 tripartite motif containing 66
TTN titin
TTPA tocopherol (alpha) transfer protein
TTTY14 testis-specific transcript, Y-linked 14 (non-protein coding)
TTTY1B testis-specific transcript, Y-linked 1B (non-protein coding)
TTTY23 testis-specific transcript, Y-linked 23 (non-protein coding)
TTTY6 testis-specific transcript, Y-linked 6 (non-protein coding)
TTYH1 tweety family member 1
TTYH2 tweety family member 2
TUBB1 tubulin, beta 1 class VI
TXLNGY taxilin gamma pseudogene, Y-linked
UBE2Q2P1 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 1
UBR4 ubiquitin protein ligase E3 component n-recognin 4
UCKL1-AS1 UCKL1 antisense RNA 1
UCP3 uncoupling protein 3 (mitochondrial, proton carrier)
UNC5CL unc-5 homolog C (C. elegans)-like
URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
USP35 ubiquitin specific peptidase 35
UVSSA UV-stimulated scaffold protein A
VEPH1 ventricular zone expressed PH domain-containing 1
VPS13D vacuolar protein sorting 13 homolog D (S. cerevisiae)
VWCE von Willebrand factor C and EGF domains
WNK2 WNK lysine deficient protein kinase 2
ZAR1L zygote arrest 1-like
ZBTB12 zinc finger and BTB domain containing 12
ZBTB25 zinc finger and BTB domain containing 25
ZBTB39 zinc finger and BTB domain containing 39
ZBTB46 zinc finger and BTB domain containing 46
ZFP92 ZFP92 zinc finger protein
ZIC4 Zic family member 4
ZNF154 zinc finger protein 154
ZNF211 zinc finger protein 211
ZNF235 zinc finger protein 235
ZNF236 zinc finger protein 236
ZNF296 zinc finger protein 296
ZNF324B zinc finger protein 324B
ZNF337 zinc finger protein 337
ZNF417 zinc finger protein 417
ZNF449 zinc finger protein 449
ZNF497 zinc finger protein 497
ZNF532 zinc finger protein 532
ZNF592 zinc finger protein 592
ZNF645 zinc finger protein 645
ZNF662 zinc finger protein 662
ZNF773 zinc finger protein 773
ZNF774 zinc finger protein 774
ZNF823 zinc finger protein 823
ZSCAN10 zinc finger and SCAN domain containing 10

low expression

Symbol Name
EBAG9 estrogen receptor binding site associated, antigen, 9
MRPS27 mitochondrial ribosomal protein S27
NDUFAF1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 1
NDUFB4 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa
PFDN1 prefoldin subunit 1
PXMP4 peroxisomal membrane protein 4, 24kDa
SLC35C1 solute carrier family 35 (GDP-fucose transporter), member C1
TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
TRAPPC9 trafficking protein particle complex 9
ZDHHC6 zinc finger, DHHC-type containing 6