Brain Lower Grade Glioma_LGG_TCGA-DU-7309-01A-11R-2090-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

335 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-DU-7309-01A-11R-2090-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ADCY1 adenylate cyclase 1 (brain)
ADCYAP1R1 adenylate cyclase activating polypeptide 1 (pituitary) receptor type I
AGMAT agmatine ureohydrolase (agmatinase)
AMIGO1 adhesion molecule with Ig-like domain 1
ANKRD30BL ankyrin repeat domain 30B-like
ANKRD34C ankyrin repeat domain 34C
ANO3 anoctamin 3
APBA1 amyloid beta (A4) precursor protein-binding, family A, member 1
ARHGAP32 Rho GTPase activating protein 32
ARHGAP35 Rho GTPase activating protein 35
ARHGAP44 Rho GTPase activating protein 44
ARPP19 cAMP-regulated phosphoprotein, 19kDa
ARRB1 arrestin, beta 1
ART1 ADP-ribosyltransferase 1
ART5 ADP-ribosyltransferase 5
ATP13A2 ATPase type 13A2
ATP1A3 ATPase, Na+/K+ transporting, alpha 3 polypeptide
ATP2B2 ATPase, Ca++ transporting, plasma membrane 2
ATXN1 ataxin 1
ATXN7L3 ataxin 7-like 3
BAG4 BCL2-associated athanogene 4
BRAF B-Raf proto-oncogene, serine/threonine kinase
BSN bassoon presynaptic cytomatrix protein
BTBD9 BTB (POZ) domain containing 9
C11ORF87 chromosome 11 open reading frame 87
C1ORF115 chromosome 1 open reading frame 115
C1ORF21 chromosome 1 open reading frame 21
C1ORF95 chromosome 1 open reading frame 95
C3ORF20 chromosome 3 open reading frame 20
C4ORF50 chromosome 4 open reading frame 50
C6ORF106 chromosome 6 open reading frame 106
CACNB3 calcium channel, voltage-dependent, beta 3 subunit
CACNG3 calcium channel, voltage-dependent, gamma subunit 3
CALM1 calmodulin 1 (phosphorylase kinase, delta)
CALM3 calmodulin 3 (phosphorylase kinase, delta)
CAMK2A calcium/calmodulin-dependent protein kinase II alpha
CAMK2N1 calcium/calmodulin-dependent protein kinase II inhibitor 1
CAMKK2 calcium/calmodulin-dependent protein kinase kinase 2, beta
CAMTA2 calmodulin binding transcription activator 2
CBLN2 cerebellin 2 precursor
CBX6 chromobox homolog 6
CCDC177 coiled-coil domain containing 177
CCDC68 coiled-coil domain containing 68
CDK16 cyclin-dependent kinase 16
CDKL5 cyclin-dependent kinase-like 5
CERS6 ceramide synthase 6
CHMP3 charged multivesicular body protein 3
CLCN6 chloride channel, voltage-sensitive 6
CLDN17 claudin 17
CLIP3 CAP-GLY domain containing linker protein 3
CLOCK clock circadian regulator
CLPTM1 cleft lip and palate associated transmembrane protein 1
CLSTN2 calsyntenin 2
CLTC clathrin, heavy chain (Hc)
CMIP c-Maf inducing protein
CNTNAP1 contactin associated protein 1
CNTNAP2 contactin associated protein-like 2
CPNE9 copine family member IX
CREG2 cellular repressor of E1A-stimulated genes 2
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like)
CRTC1 CREB regulated transcription coactivator 1
CYP4A11 cytochrome P450, family 4, subfamily A, polypeptide 11
DBNDD1 dysbindin (dystrobrevin binding protein 1) domain containing 1
DDN dendrin
DENND4B DENN/MADD domain containing 4B
DENND5B DENN/MADD domain containing 5B
DGCR5 DiGeorge syndrome critical region gene 5 (non-protein coding)
DLG4 discs, large homolog 4 (Drosophila)
DLGAP2 discs, large (Drosophila) homolog-associated protein 2
DLGAP3 discs, large (Drosophila) homolog-associated protein 3
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5
DOC2B double C2-like domains, beta
DOCK3 dedicator of cytokinesis 3
DOK6 docking protein 6
DUSP3 dual specificity phosphatase 3
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1
EFR3B EFR3 homolog B (S. cerevisiae)
EMC1 ER membrane protein complex subunit 1
EPHA6 EPH receptor A6
FAM163A family with sequence similarity 163, member A
FAM182A family with sequence similarity 182, member A
FAM189A1 family with sequence similarity 189, member A1
FAM47A family with sequence similarity 47, member A
FAM49A family with sequence similarity 49, member A
FBXL16 F-box and leucine-rich repeat protein 16
FBXO34 F-box protein 34
FBXO41 F-box protein 41
FBXW11 F-box and WD repeat domain containing 11
FIG4 FIG4 phosphoinositide 5-phosphatase
FLJ42627 uncharacterized LOC645644
FMN1 formin 1
FRMD3 FERM domain containing 3
FRMPD4 FERM and PDZ domain containing 4
FRRS1L ferric-chelate reductase 1-like
GABRB2 gamma-aminobutyric acid (GABA) A receptor, beta 2
GABRG3 gamma-aminobutyric acid (GABA) A receptor, gamma 3
GARNL3 GTPase activating Rap/RanGAP domain-like 3
GLP2R glucagon-like peptide 2 receptor
GLUD1 glutamate dehydrogenase 1
GLUD2 glutamate dehydrogenase 2
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1
GNPTAB N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
GPR101 G protein-coupled receptor 101
GPR137B G protein-coupled receptor 137B
GPR21 G protein-coupled receptor 21
GPR26 G protein-coupled receptor 26
GPX5 glutathione peroxidase 5
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B
GRM2 glutamate receptor, metabotropic 2
GRM3 glutamate receptor, metabotropic 3
GSG1 germ cell associated 1
GSK3A glycogen synthase kinase 3 alpha
GUCY1B3 guanylate cyclase 1, soluble, beta 3
GYPB glycophorin B (MNS blood group)
HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2
HOMER1 homer scaffolding protein 1
HPCAL4 hippocalcin like 4
HPYR1 Helicobacter pylori responsive 1 (non-protein coding)
HTR1B 5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled
HTR2A 5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled
HTT huntingtin
IDS iduronate 2-sulfatase
IFNA14 interferon, alpha 14
IFNA8 interferon, alpha 8
IFNL3 interferon, lambda 3
INPP4A inositol polyphosphate-4-phosphatase, type I, 107kDa
IPCEF1 interaction protein for cytohesin exchange factors 1
IQSEC1 IQ motif and Sec7 domain 1
IQSEC3 IQ motif and Sec7 domain 3
ITGA9 integrin, alpha 9
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1
ITSN1 intersectin 1 (SH3 domain protein)
KCMF1 potassium channel modulatory factor 1
KCNA2 potassium channel, voltage gated shaker related subfamily A, member 2
KCNAB2 potassium channel, voltage gated subfamily A regulatory beta subunit 2
KCNB1 potassium channel, voltage gated Shab related subfamily B, member 1
KCNJ12 potassium channel, inwardly rectifying subfamily J, member 12
KCNK18 potassium channel, two pore domain subfamily K, member 18
KCNN1 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 1
KCNQ3 potassium channel, voltage gated KQT-like subfamily Q, member 3
KCNQ4 potassium channel, voltage gated KQT-like subfamily Q, member 4
KCNV1 potassium channel, voltage gated modifier subfamily V, member 1
KCTD16 potassium channel tetramerization domain containing 16
KIAA0430 KIAA0430
KIAA1045 KIAA1045
KIAA1191 KIAA1191
KIAA1549L KIAA1549-like
KIAA1644 KIAA1644
KIF17 kinesin family member 17
KIF2B kinesin family member 2B
KLK5 kallikrein-related peptidase 5
KLKP1 kallikrein pseudogene 1
KRT27 keratin 27, type I
KRT78 keratin 78, type II
KRTAP5-2 keratin associated protein 5-2
LCN1 lipocalin 1
LHX6 LIM homeobox 6
LIMK1 LIM domain kinase 1
LINC00052 long intergenic non-protein coding RNA 52
LOC652276 potassium channel tetramerization domain containing 5 pseudogene
LPA lipoprotein, Lp(a)
LRTM2 leucine-rich repeats and transmembrane domains 2
LUZP1 leucine zipper protein 1
LYNX1 Ly6/neurotoxin 1
LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
MAGEB4 melanoma antigen family B4
MAP1A microtubule-associated protein 1A
MAP2 microtubule-associated protein 2
MAP3K9 mitogen-activated protein kinase kinase kinase 9
MAS1 MAS1 proto-oncogene, G protein-coupled receptor
MCHR2 melanin-concentrating hormone receptor 2
ME1 malic enzyme 1, NADP(+)-dependent, cytosolic
MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B
MPPED1 metallophosphoesterase domain containing 1
MPRIP myosin phosphatase Rho interacting protein
MTA3 metastasis associated 1 family, member 3
MYH13 myosin, heavy chain 13, skeletal muscle
MYO5A myosin VA (heavy chain 12, myoxin)
MYOD1 myogenic differentiation 1
NCEH1 neutral cholesterol ester hydrolase 1
NCS1 neuronal calcium sensor 1
NDUFS1 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
NEURL1 neuralized E3 ubiquitin protein ligase 1
NEUROD6 neuronal differentiation 6
NISCH nischarin
NMBR neuromedin B receptor
NNT nicotinamide nucleotide transhydrogenase
NOTCH2 notch 2
NPFFR1 neuropeptide FF receptor 1
NXN nucleoredoxin
OAF OAF homolog (Drosophila)
OAZ2 ornithine decarboxylase antizyme 2
ODF3 outer dense fiber of sperm tails 3
OLFM3 olfactomedin 3
OR10G7 olfactory receptor, family 10, subfamily G, member 7
OR10Q1 olfactory receptor, family 10, subfamily Q, member 1
OR13C2 olfactory receptor, family 13, subfamily C, member 2
OR14I1 olfactory receptor, family 14, subfamily I, member 1
OR1A2 olfactory receptor, family 1, subfamily A, member 2
OR1B1 olfactory receptor, family 1, subfamily B, member 1 (gene/pseudogene)
OR1F1 olfactory receptor, family 1, subfamily F, member 1
OR1L1 olfactory receptor, family 1, subfamily L, member 1
OR2F2 olfactory receptor, family 2, subfamily F, member 2
OR2S2 olfactory receptor, family 2, subfamily S, member 2 (gene/pseudogene)
OR2T10 olfactory receptor, family 2, subfamily T, member 10
OR4D10 olfactory receptor, family 4, subfamily D, member 10
OR4K5 olfactory receptor, family 4, subfamily K, member 5
OR6S1 olfactory receptor, family 6, subfamily S, member 1
OR6T1 olfactory receptor, family 6, subfamily T, member 1
OR8D4 olfactory receptor, family 8, subfamily D, member 4
OR9Q1 olfactory receptor, family 9, subfamily Q, member 1
PACSIN1 protein kinase C and casein kinase substrate in neurons 1
PAK6 p21 protein (Cdc42/Rac)-activated kinase 6
PCDH7 protocadherin 7
PCDHB4 protocadherin beta 4
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble)
PCLO piccolo presynaptic cytomatrix protein
PDE1A phosphodiesterase 1A, calmodulin-dependent
PDXP pyridoxal (pyridoxine, vitamin B6) phosphatase
PEX19 peroxisomal biogenesis factor 19
PHACTR1 phosphatase and actin regulator 1
PI4KA phosphatidylinositol 4-kinase, catalytic, alpha
PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta
PINK1 PTEN induced putative kinase 1
PIP4K2B phosphatidylinositol-5-phosphate 4-kinase, type II, beta
PITPNM1 phosphatidylinositol transfer protein, membrane-associated 1
PITPNM3 PITPNM family member 3
PITRM1 pitrilysin metallopeptidase 1
PLCH1 phospholipase C, eta 1
POU6F1 POU class 6 homeobox 1
PPEF1 protein phosphatase, EF-hand calcium binding domain 1
PPP1R16B protein phosphatase 1, regulatory subunit 16B
PPP2R2C protein phosphatase 2, regulatory subunit B, gamma
PPP2R5C protein phosphatase 2, regulatory subunit B', gamma
PPP3CB protein phosphatase 3, catalytic subunit, beta isozyme
PPP4R4 protein phosphatase 4, regulatory subunit 4
PRAP1 proline-rich acidic protein 1
PRKCB protein kinase C, beta
PRKCG protein kinase C, gamma
PRSS16 protease, serine, 16 (thymus)
PRSS35 protease, serine, 35
PSD3 pleckstrin and Sec7 domain containing 3
PTPN4 protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
PTPRT protein tyrosine phosphatase, receptor type, T
PVRL3 poliovirus receptor-related 3
R3HDM2 R3H domain containing 2
RAB11FIP5 RAB11 family interacting protein 5 (class I)
RAPGEF4 Rap guanine nucleotide exchange factor (GEF) 4
RARB retinoic acid receptor, beta
RASGRF2 Ras protein-specific guanine nucleotide-releasing factor 2
RASL10B RAS-like, family 10, member B
RCVRN recoverin
RERE arginine-glutamic acid dipeptide (RE) repeats
RERG RAS-like, estrogen-regulated, growth inhibitor
RGS4 regulator of G-protein signaling 4
RIMKLA ribosomal modification protein rimK-like family member A
RIMS1 regulating synaptic membrane exocytosis 1
RIMS3 regulating synaptic membrane exocytosis 3
RNF11 ring finger protein 11
RNF157 ring finger protein 157
RNF41 ring finger protein 41, E3 ubiquitin protein ligase
RPH3A rabphilin 3A
RPL13AP17 ribosomal protein L13a pseudogene 17
RPL3L ribosomal protein L3-like
SCN8A sodium channel, voltage gated, type VIII alpha subunit
SEMA3G sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G
SEMA4A sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
SEPT3 septin 3
SEPT5 septin 5
SESN3 sestrin 3
SESTD1 SEC14 and spectrin domains 1
SGTB small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
SHANK1 SH3 and multiple ankyrin repeat domains 1
SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2
SLC25A23 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
SLC45A4 solute carrier family 45, member 4
SLC5A5 solute carrier family 5 (sodium/iodide cotransporter), member 5
SMIM10L2A small integral membrane protein 10 like 2A
SMIM10L2B small integral membrane protein 10 like 2B
SMIM24 small integral membrane protein 24
SNCG synuclein, gamma (breast cancer-specific protein 1)
SNORD115-26 small nucleolar RNA, C/D box 115-26
SOCS7 suppressor of cytokine signaling 7
SOWAHA sosondowah ankyrin repeat domain family member A
SPTAN1 spectrin, alpha, non-erythrocytic 1
SPTBN1 spectrin, beta, non-erythrocytic 1
SREBF2 sterol regulatory element binding transcription factor 2
ST6GALNAC6 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
STS steroid sulfatase (microsomal), isozyme S
STXBP5 syntaxin binding protein 5 (tomosyn)
SUN3 Sad1 and UNC84 domain containing 3
SYNGAP1 synaptic Ras GTPase activating protein 1
SYNJ1 synaptojanin 1
SYNPO synaptopodin
TAS2R3 taste receptor, type 2, member 3
TAS2R4 taste receptor, type 2, member 4
TAS2R60 taste receptor, type 2, member 60
TBC1D13 TBC1 domain family, member 13
TCAF1 TRPM8 channel-associated factor 1
TCP11 t-complex 11, testis-specific
TEK TEK tyrosine kinase, endothelial
TESPA1 thymocyte expressed, positive selection associated 1
THRB thyroid hormone receptor, beta
TMEM40 transmembrane protein 40
TMEM51-AS1 TMEM51 antisense RNA 1
TMEM8B transmembrane protein 8B
TMLHE trimethyllysine hydroxylase, epsilon
TMOD2 tropomodulin 2 (neuronal)
TNPO2 transportin 2
TOPAZ1 testis and ovary specific PAZ domain containing 1
TPI1P3 triosephosphate isomerase 1 pseudogene 3
TRAF3 TNF receptor-associated factor 3
TRPC6 transient receptor potential cation channel, subfamily C, member 6
TSHB thyroid stimulating hormone, beta
UNC13C unc-13 homolog C (C. elegans)
USP12 ubiquitin specific peptidase 12
VAPB VAMP (vesicle-associated membrane protein)-associated protein B and C
WDR7 WD repeat domain 7
WDR87 WD repeat domain 87
WNK1 WNK lysine deficient protein kinase 1
WSB2 WD repeat and SOCS box containing 2
ZBTB4 zinc finger and BTB domain containing 4
ZC3H7B zinc finger CCCH-type containing 7B
ZER1 zyg-11 related, cell cycle regulator
ZFAT-AS1 ZFAT antisense RNA 1
ZMYM3 zinc finger, MYM-type 3
ZNF483 zinc finger protein 483
ZNF710 zinc finger protein 710
ZNF77 zinc finger protein 77
ZNF804B zinc finger protein 804B

low expression

Symbol Name
CEP44 centrosomal protein 44kDa
CYP20A1 cytochrome P450, family 20, subfamily A, polypeptide 1
PRIMPOL primase and polymerase (DNA-directed)
ZSCAN32 zinc finger and SCAN domain containing 32