Brain Lower Grade Glioma_LGG_TCGA-DU-7298-01A-11R-2027-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

258 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-DU-7298-01A-11R-2027-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABCE1 ATP-binding cassette, sub-family E (OABP), member 1
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase
ADGRG6 adhesion G protein-coupled receptor G6
AGO3 argonaute RISC catalytic component 3
AKAP4 A kinase (PRKA) anchor protein 4
ANAPC1 anaphase promoting complex subunit 1
ANKHD1 ankyrin repeat and KH domain containing 1
ANKRD17 ankyrin repeat domain 17
AOX2P aldehyde oxidase 2 pseudogene
AP3S2 adaptor-related protein complex 3, sigma 2 subunit
AP4E1 adaptor-related protein complex 4, epsilon 1 subunit
API5 apoptosis inhibitor 5
ASXL3 additional sex combs like transcriptional regulator 3
ATAD2B ATPase family, AAA domain containing 2B
ATF7IP activating transcription factor 7 interacting protein
ATXN7L3B ataxin 7-like 3B
BAZ1A bromodomain adjacent to zinc finger domain, 1A
BBS10 Bardet-Biedl syndrome 10
BEST3 bestrophin 3
BICD2 bicaudal D homolog 2 (Drosophila)
BRCA2 breast cancer 2, early onset
BRIP1 BRCA1 interacting protein C-terminal helicase 1
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
BTBD1 BTB (POZ) domain containing 1
C2ORF16 chromosome 2 open reading frame 16
C2ORF44 chromosome 2 open reading frame 44
C2ORF80 chromosome 2 open reading frame 80
C7ORF66 chromosome 7 open reading frame 66
CBLB Cbl proto-oncogene B, E3 ubiquitin protein ligase
CBR4 carbonyl reductase 4
CCDC15 coiled-coil domain containing 15
CCDC178 coiled-coil domain containing 178
CCDC7 coiled-coil domain containing 7
CCNJ cyclin J
CDC25A cell division cycle 25A
CDK12 cyclin-dependent kinase 12
CENPC centromere protein C
CEP85 centrosomal protein 85kDa
CHRM5 cholinergic receptor, muscarinic 5
CLIC5 chloride intracellular channel 5
CNBD1 cyclic nucleotide binding domain containing 1
CNOT1 CCR4-NOT transcription complex, subunit 1
CPNE3 copine III
CRIPT cysteine-rich PDZ-binding protein
CSTF2T cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
CTH cystathionine gamma-lyase
CYP4A22 cytochrome P450, family 4, subfamily A, polypeptide 22
DEFB125 defensin, beta 125
DEPDC7 DEP domain containing 7
DGKH diacylglycerol kinase, eta
DHX8 DEAH (Asp-Glu-Ala-His) box polypeptide 8
DIXDC1 DIX domain containing 1
DNAAF2 dynein, axonemal, assembly factor 2
EFTUD1 elongation factor Tu GTP binding domain containing 1
EFTUD2 elongation factor Tu GTP binding domain containing 2
EPG5 ectopic P-granules autophagy protein 5 homolog (C. elegans)
ERBB3 erb-b2 receptor tyrosine kinase 3
ERCC4 excision repair cross-complementation group 4
ERCC6L2 excision repair cross-complementation group 6-like 2
FAM178A family with sequence similarity 178, member A
FAM53C family with sequence similarity 53, member C
FANCM Fanconi anemia, complementation group M
FASTKD2 FAST kinase domains 2
FASTKD5 FAST kinase domains 5
FLRT3 fibronectin leucine rich transmembrane protein 3
FUT11 fucosyltransferase 11 (alpha (1,3) fucosyltransferase)
GEMIN4 gem (nuclear organelle) associated protein 4
GHRH growth hormone releasing hormone
GLDN gliomedin
GLE1 GLE1 RNA export mediator
GOLGA6A golgin A6 family, member A
GOLGA6B golgin A6 family, member B
GPR137B G protein-coupled receptor 137B
GTF2H2C GTF2H2 family member C
GTF3C4 general transcription factor IIIC, polypeptide 4, 90kDa
HIP1 huntingtin interacting protein 1
HMG20A high mobility group 20A
IFNB1 interferon, beta 1, fibroblast
IKZF2 IKAROS family zinc finger 2 (Helios)
IL3 interleukin 3
INHBC inhibin, beta C
INIP INTS3 and NABP interacting protein
IPMK inositol polyphosphate multikinase
IPO11 importin 11
IREB2 iron-responsive element binding protein 2
KDM4A lysine (K)-specific demethylase 4A
KIAA0391 KIAA0391
KIAA0586 KIAA0586
KIAA1586 KIAA1586
KLHL20 kelch-like family member 20
LCE2C late cornified envelope 2C
LEMD3 LEM domain containing 3
LINC00479 long intergenic non-protein coding RNA 479
LINC01548 long intergenic non-protein coding RNA 1548
LOC100130264 uncharacterized LOC100130264
LRIF1 ligand dependent nuclear receptor interacting factor 1
LRIG2 leucine-rich repeats and immunoglobulin-like domains 2
LRR1 leucine rich repeat protein 1
LRRC57 leucine rich repeat containing 57
MED1 mediator complex subunit 1
MGA MGA, MAX dimerization protein
MGME1 mitochondrial genome maintenance exonuclease 1
MIP major intrinsic protein of lens fiber
MORC1 MORC family CW-type zinc finger 1
MRPL30 mitochondrial ribosomal protein L30
MRPL50 mitochondrial ribosomal protein L50
MTMR1 myotubularin related protein 1
MTMR2 myotubularin related protein 2
MYL10 myosin, light chain 10, regulatory
NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit
NAA35 N(alpha)-acetyltransferase 35, NatC auxiliary subunit
NAT1 N-acetyltransferase 1 (arylamine N-acetyltransferase)
NCBP1 nuclear cap binding protein subunit 1, 80kDa
NFRKB nuclear factor related to kappaB binding protein
NLRP5 NLR family, pyrin domain containing 5
NOL11 nucleolar protein 11
NOL8 nucleolar protein 8
NPFFR1 neuropeptide FF receptor 1
NPY neuropeptide Y
NUP188 nucleoporin 188kDa
NUP88 nucleoporin 88kDa
OR10A6 olfactory receptor, family 10, subfamily A, member 6 (gene/pseudogene)
OR10W1 olfactory receptor, family 10, subfamily W, member 1
OR13C4 olfactory receptor, family 13, subfamily C, member 4
OR51B2 olfactory receptor, family 51, subfamily B, member 2 (gene/pseudogene)
OR52B4 olfactory receptor, family 52, subfamily B, member 4 (gene/pseudogene)
OR7D2 olfactory receptor, family 7, subfamily D, member 2
PALB2 partner and localizer of BRCA2
PARP16 poly (ADP-ribose) polymerase family, member 16
PCDH10 protocadherin 10
PDCL phosducin-like
PDIK1L PDLIM1 interacting kinase 1 like
PEAK1 pseudopodium-enriched atypical kinase 1
PGBD4 piggyBac transposable element derived 4
PGD phosphogluconate dehydrogenase
PHF6 PHD finger protein 6
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
PLA2G4E phospholipase A2, group IVE
PNRC2 proline-rich nuclear receptor coactivator 2
POLR2D polymerase (RNA) II (DNA directed) polypeptide D
PPAN-P2RY11 PPAN-P2RY11 readthrough
PRAMEF2 PRAME family member 2
PRIM1 primase, DNA, polypeptide 1 (49kDa)
PRKAG1 protein kinase, AMP-activated, gamma 1 non-catalytic subunit
PRKRIR protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)
PRMT9 protein arginine methyltransferase 9
PRPF4 pre-mRNA processing factor 4
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
PSPC1 paraspeckle component 1
RAD18 RAD18 E3 ubiquitin protein ligase
RAD23B RAD23 homolog B (S. cerevisiae)
RAPGEF6 Rap guanine nucleotide exchange factor (GEF) 6
RBM12 RNA binding motif protein 12
RBM18 RNA binding motif protein 18
RC3H2 ring finger and CCCH-type domains 2
RCN2 reticulocalbin 2, EF-hand calcium binding domain
RMI1 RecQ mediated genome instability 1
RNF20 ring finger protein 20, E3 ubiquitin protein ligase
RNF214 ring finger protein 214
RSC1A1 regulatory solute carrier protein, family 1, member 1
RTTN rotatin
SFSWAP splicing factor, suppressor of white-apricot family
SGCZ sarcoglycan, zeta
SGK3 serum/glucocorticoid regulated kinase family, member 3
SH3D19 SH3 domain containing 19
SH3RF1 SH3 domain containing ring finger 1
SIX4 SIX homeobox 4
SKIV2L2 superkiller viralicidic activity 2-like 2 (S. cerevisiae)
SLC16A1 solute carrier family 16 (monocarboxylate transporter), member 1
SLITRK6 SLIT and NTRK-like family, member 6
SLX4IP SLX4 interacting protein
SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
SMCR8 Smith-Magenis syndrome chromosome region, candidate 8
SMG8 SMG8 nonsense mediated mRNA decay factor
SOX3 SRY (sex determining region Y)-box 3
SP1 Sp1 transcription factor
SPATA5L1 spermatogenesis associated 5-like 1
SPCS3 signal peptidase complex subunit 3 homolog (S. cerevisiae)
SPTY2D1 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1
SRP54 signal recognition particle 54kDa
STPG2 sperm-tail PG-rich repeat containing 2
STX17 syntaxin 17
SUPT16H suppressor of Ty 16 homolog (S. cerevisiae)
TAS2R50 taste receptor, type 2, member 50
TBATA thymus, brain and testes associated
TBK1 TANK-binding kinase 1
TCEANC2 transcription elongation factor A (SII) N-terminal and central domain containing 2
TEX10 testis expressed 10
TEX9 testis expressed 9
TFAM transcription factor A, mitochondrial
TGM6 transglutaminase 6
THAP2 THAP domain containing, apoptosis associated protein 2
TICRR TOPBP1-interacting checkpoint and replication regulator
TIMM22 translocase of inner mitochondrial membrane 22 homolog (yeast)
TIPIN TIMELESS interacting protein
TMEM194A transmembrane protein 194A
TOR1A torsin family 1, member A (torsin A)
TRIM62 tripartite motif containing 62
TRMT1L tRNA methyltransferase 1 homolog (S. cerevisiae)-like
TRMT6 tRNA methyltransferase 6
TRPC4 transient receptor potential cation channel, subfamily C, member 4
TSEN15 TSEN15 tRNA splicing endonuclease subunit
TSSK4 testis-specific serine kinase 4
TSTD2 thiosulfate sulfurtransferase (rhodanese)-like domain containing 2
TTC37 tetratricopeptide repeat domain 37
TTF2 transcription termination factor, RNA polymerase II
TUBA3C tubulin, alpha 3c
TXLNG taxilin gamma
UHRF1 ubiquitin-like with PHD and ring finger domains 1
USP15 ubiquitin specific peptidase 15
USP28 ubiquitin specific peptidase 28
ZBTB26 zinc finger and BTB domain containing 26
ZBTB34 zinc finger and BTB domain containing 34
ZBTB39 zinc finger and BTB domain containing 39
ZBTB43 zinc finger and BTB domain containing 43
ZBTB6 zinc finger and BTB domain containing 6
ZCCHC6 zinc finger, CCHC domain containing 6
ZDHHC20 zinc finger, DHHC-type containing 20
ZFC3H1 zinc finger, C3H1-type containing
ZFP3 ZFP3 zinc finger protein
ZNF101 zinc finger protein 101
ZNF121 zinc finger protein 121
ZNF136 zinc finger protein 136
ZNF253 zinc finger protein 253
ZNF254 zinc finger protein 254
ZNF257 zinc finger protein 257
ZNF35 zinc finger protein 35
ZNF367 zinc finger protein 367
ZNF426 zinc finger protein 426
ZNF430 zinc finger protein 430
ZNF484 zinc finger protein 484
ZNF492 zinc finger protein 492
ZNF510 zinc finger protein 510
ZNF555 zinc finger protein 555
ZNF560 zinc finger protein 560
ZNF562 zinc finger protein 562
ZNF708 zinc finger protein 708
ZNF714 zinc finger protein 714
ZNF718 zinc finger protein 718
ZNF727 zinc finger protein 727
ZNF782 zinc finger protein 782
ZNF788 zinc finger family member 788
ZNF791 zinc finger protein 791
ZNF91 zinc finger protein 91
ZNF93 zinc finger protein 93
ZNF98 zinc finger protein 98
ZNF99 zinc finger protein 99
ZSCAN16 zinc finger and SCAN domain containing 16
ZW10 zw10 kinetochore protein

low expression

Symbol Name
ACAD9 acyl-CoA dehydrogenase family, member 9
BECN1 beclin 1, autophagy related
MED15 mediator complex subunit 15
ORMDL3 ORMDL sphingolipid biosynthesis regulator 3
PSMD3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
SUPT6H suppressor of Ty 6 homolog (S. cerevisiae)
TNFAIP1 tumor necrosis factor, alpha-induced protein 1 (endothelial)
ZNF418 zinc finger protein 418