Brain Lower Grade Glioma_LGG_TCGA-DU-6395-01A-13R-1708-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

245 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-DU-6395-01A-13R-1708-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABCC6 ATP-binding cassette, sub-family C (CFTR/MRP), member 6
ABCF2 ATP-binding cassette, sub-family F (GCN20), member 2
ABLIM3 actin binding LIM protein family, member 3
ADCK1 aarF domain containing kinase 1
ADCY8 adenylate cyclase 8 (brain)
AKAP3 A kinase (PRKA) anchor protein 3
AKR1A1 aldo-keto reductase family 1, member A1 (aldehyde reductase)
APOE apolipoprotein E
ASIP agouti signaling protein
BCKDHA branched chain keto acid dehydrogenase E1, alpha polypeptide
BCL3 B-cell CLL/lymphoma 3
BHLHE40 basic helix-loop-helix family, member e40
BLVRA biliverdin reductase A
C17ORF98 chromosome 17 open reading frame 98
C1ORF94 chromosome 1 open reading frame 94
C2CD4B C2 calcium-dependent domain containing 4B
C7ORF26 chromosome 7 open reading frame 26
C7ORF50 chromosome 7 open reading frame 50
C9ORF84 chromosome 9 open reading frame 84
CCDC80 coiled-coil domain containing 80
CCDC85C coiled-coil domain containing 85C
CCDC97 coiled-coil domain containing 97
CCL2 chemokine (C-C motif) ligand 2
CCL3 chemokine (C-C motif) ligand 3
CCL3L1 chemokine (C-C motif) ligand 3-like 1
CCL4 chemokine (C-C motif) ligand 4
CCL4L2 chemokine (C-C motif) ligand 4-like 2
CCL8 chemokine (C-C motif) ligand 8
CCRL2 chemokine (C-C motif) receptor-like 2
CD14 CD14 molecule
CD83 CD83 molecule
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDH15 cadherin 15, type 1, M-cadherin (myotubule)
CDRT4 CMT1A duplicated region transcript 4
CGB2 chorionic gonadotropin, beta polypeptide 2
CH25H cholesterol 25-hydroxylase
CIDEC cell death-inducing DFFA-like effector c
CLIP2 CAP-GLY domain containing linker protein 2
CLTA clathrin, light chain A
COA1 cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae)
CPB1 carboxypeptidase B1 (tissue)
CREB3 cAMP responsive element binding protein 3
CSF1 colony stimulating factor 1 (macrophage)
CUX1 cut-like homeobox 1
CWF19L2 CWF19-like 2, cell cycle control (S. pombe)
CX3CL1 chemokine (C-X3-C motif) ligand 1
CXCL2 chemokine (C-X-C motif) ligand 2
CXCL3 chemokine (C-X-C motif) ligand 3
CYP2W1 cytochrome P450, family 2, subfamily W, polypeptide 1
DCAKD dephospho-CoA kinase domain containing
DEFB4A defensin, beta 4A
DFNA5 deafness, autosomal dominant 5
DLL3 delta-like 3 (Drosophila)
EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1
EIF2AK1 eukaryotic translation initiation factor 2-alpha kinase 1
EIF3B eukaryotic translation initiation factor 3, subunit B
EIF4H eukaryotic translation initiation factor 4H
EIF5AL1 eukaryotic translation initiation factor 5A-like 1
EIF5B eukaryotic translation initiation factor 5B
EXOC4 exocyst complex component 4
FAM213B family with sequence similarity 213, member B
FBXO6 F-box protein 6
FCAR Fc fragment of IgA receptor
FFAR2 free fatty acid receptor 2
FFAR3 free fatty acid receptor 3
FKBP4 FK506 binding protein 4, 59kDa
FOS FBJ murine osteosarcoma viral oncogene homolog
FOXK1 forkhead box K1
GADD45B growth arrest and DNA-damage-inducible, beta
GAGE12J G antigen 12J
GALR3 galanin receptor 3
GATS GATS, stromal antigen 3 opposite strand
GFRAL GDNF family receptor alpha like
GLIPR2 GLI pathogenesis-related 2
GNB2 guanine nucleotide binding protein (G protein), beta polypeptide 2
GP9 glycoprotein IX (platelet)
GPR153 G protein-coupled receptor 153
GPR19 G protein-coupled receptor 19
GSTO2 glutathione S-transferase omega 2
HAS2-AS1 HAS2 antisense RNA 1
HBA2 hemoglobin, alpha 2
HINT2 histidine triad nucleotide binding protein 2
HPSE heparanase
HPSE2 heparanase 2 (inactive)
HSP90AB4P heat shock protein 90kDa alpha (cytosolic), class B member 4, pseudogene
ICAM1 intercellular adhesion molecule 1
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
IDNK idnK, gluconokinase homolog (E. coli)
IKZF1 IKAROS family zinc finger 1 (Ikaros)
IL12A interleukin 12A
IL1A interleukin 1, alpha
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)
INSL4 insulin-like 4 (placenta)
IQCE IQ motif containing E
IRAK2 interleukin-1 receptor-associated kinase 2
IRF1 interferon regulatory factor 1
JADE3 jade family PHD finger 3
JUNB jun B proto-oncogene
KHDC1 KH homology domain containing 1
KHDRBS2 KH domain containing, RNA binding, signal transduction associated 2
KRTAP5-5 keratin associated protein 5-5
LGALS14 lectin, galactoside-binding, soluble, 14
LINC00094 long intergenic non-protein coding RNA 94
LINC00244 long intergenic non-protein coding RNA 244
LOC100130264 uncharacterized LOC100130264
LOC100134868 uncharacterized LOC100134868
LOC283922 pyruvate dehydrogenase phosphatase regulatory subunit pseudogene
LOC441204 uncharacterized LOC441204
LOC644669 ankyrin repeat domain 30B pseudogene
LOC646762 uncharacterized LOC646762
LOC646999 akirin 1 pseudogene
LRRC10B leucine rich repeat containing 10B
LRRC4B leucine rich repeat containing 4B
LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
MED22 mediator complex subunit 22
MEPCE methylphosphate capping enzyme
MIDN midnolin
MKRN1 makorin ring finger protein 1
MPI mannose phosphate isomerase
MRS2P2 MRS2 pseudogene 2
MYOZ2 myozenin 2
NEUROG3 neurogenin 3
NFIA nuclear factor I/A
NFKBIE nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon
NLRX1 NLR family member X1
NMB neuromedin B
NMNAT3 nicotinamide nucleotide adenylyltransferase 3
NOX5 NADPH oxidase, EF-hand calcium binding domain 5
NRARP NOTCH-regulated ankyrin repeat protein
NUDCD3 NudC domain containing 3
NUTM2G NUT family member 2G
OR10Q1 olfactory receptor, family 10, subfamily Q, member 1
OR1J1 olfactory receptor, family 1, subfamily J, member 1
OR52E2 olfactory receptor, family 52, subfamily E, member 2
OR5AP2 olfactory receptor, family 5, subfamily AP, member 2
OR5M10 olfactory receptor, family 5, subfamily M, member 10
OR6T1 olfactory receptor, family 6, subfamily T, member 1
PANK4 pantothenate kinase 4
PANX3 pannexin 3
PCDHA13 protocadherin alpha 13
PCDHB18P protocadherin beta 18 pseudogene
PCDHGA5 protocadherin gamma subfamily A, 5
PDCD1 programmed cell death 1
PEX10 peroxisomal biogenesis factor 10
PEX5 peroxisomal biogenesis factor 5
PLA2G7 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
POLD2 polymerase (DNA directed), delta 2, accessory subunit
POLR2J2 polymerase (RNA) II (DNA directed) polypeptide J2
POLR2J3 polymerase (RNA) II (DNA directed) polypeptide J3
POU2F1 POU class 2 homeobox 1
PPP1R11 protein phosphatase 1, regulatory (inhibitor) subunit 11
PPP1R2P9 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9
PPP2R5A protein phosphatase 2, regulatory subunit B', alpha
R3HDML R3H domain containing-like
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
RASSF5 Ras association (RalGDS/AF-6) domain family member 5
REG4 regenerating islet-derived family, member 4
RHOA ras homolog family member A
RIN2 Ras and Rab interactor 2
RIPK4 receptor-interacting serine-threonine kinase 4
RND1 Rho family GTPase 1
RNF216 ring finger protein 216
RNF216P1 ring finger protein 216 pseudogene 1
RNF38 ring finger protein 38
RPL10L ribosomal protein L10-like
RPL13P5 ribosomal protein L13 pseudogene 5
RPL23AP32 ribosomal protein L23a pseudogene 32
RPL9 ribosomal protein L9
SALL2 spalt-like transcription factor 2
SBDS Shwachman-Bodian-Diamond syndrome
SCARNA15 small Cajal body-specific RNA 15
SCT secretin
SELE selectin E
SFTPD surfactant protein D
SH2B2 SH2B adaptor protein 2
SLC25A47 solute carrier family 25, member 47
SLC2A14 solute carrier family 2 (facilitated glucose transporter), member 14
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3
SLC5A12 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12
SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
SMIM21 small integral membrane protein 21
SND1 staphylococcal nuclease and tudor domain containing 1
SNX8 sorting nexin 8
SOCS3 suppressor of cytokine signaling 3
SP2 Sp2 transcription factor
SPESP1 sperm equatorial segment protein 1
SPINK7 serine peptidase inhibitor, Kazal type 7 (putative)
STX11 syntaxin 11
STYXL1 serine/threonine/tyrosine interacting-like 1
SULF2 sulfatase 2
SURF6 surfeit 6
TAS2R31 taste receptor, type 2, member 31
TAS2R43 taste receptor, type 2, member 43
TCHH trichohyalin
TESK1 testis-specific kinase 1
TEX40 testis expressed 40
TLN1 talin 1
TMEM8B transmembrane protein 8B
TMEM9 transmembrane protein 9
TNFAIP8L3 tumor necrosis factor, alpha-induced protein 8-like 3
TNFRSF21 tumor necrosis factor receptor superfamily, member 21
TNFSF18 tumor necrosis factor (ligand) superfamily, member 18
TNS3 tensin 3
TPTEP1 transmembrane phosphatase with tensin homology pseudogene 1
TRIM42 tripartite motif containing 42
TRIM64 tripartite motif containing 64
TTC22 tetratricopeptide repeat domain 22
TTYH1 tweety family member 1
TXNL1 thioredoxin-like 1
TYW1B tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)
UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative)
UPP2 uridine phosphorylase 2
VCAM1 vascular cell adhesion molecule 1
VPS37D vacuolar protein sorting 37 homolog D (S. cerevisiae)
WBP11 WW domain binding protein 11
WBP11P1 WW domain binding protein 11 pseudogene 1
WBSCR16 Williams-Beuren syndrome chromosome region 16
WEE2 WEE1 homolog 2 (S. pombe)
WIPI2 WD repeat domain, phosphoinositide interacting 2
XIRP1 xin actin binding repeat containing 1
YKT6 YKT6 v-SNARE homolog (S. cerevisiae)
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon
ZDHHC4 zinc finger, DHHC-type containing 4
ZFP36L2 ZFP36 ring finger protein-like 2
ZNF212 zinc finger protein 212
ZNF282 zinc finger protein 282
ZNF425 zinc finger protein 425
ZNF746 zinc finger protein 746
ZNF777 zinc finger protein 777
ZNF835 zinc finger protein 835
ZNF837 zinc finger protein 837
ZNF853 zinc finger protein 853
ZP3 zona pellucida glycoprotein 3 (sperm receptor)

low expression

Symbol Name
ATG16L1 autophagy related 16-like 1 (S. cerevisiae)
CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1
COPS7B COP9 signalosome subunit 7B
COPS8 COP9 signalosome subunit 8
COX19 COX19 cytochrome c oxidase assembly factor
DUSP28 dual specificity phosphatase 28
EIF4E2 eukaryotic translation initiation factor 4E family member 2
FBXO45 F-box protein 45
FYTTD1 forty-two-three domain containing 1
SENP5 SUMO1/sentrin specific peptidase 5
WDR53 WD repeat domain 53