Brain Lower Grade Glioma_LGG_TCGA-DB-A4XG-01A-11R-A27Q-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

178 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-DB-A4XG-01A-11R-A27Q-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
AMZ1 archaelysin family metallopeptidase 1
ANGPTL3 angiopoietin-like 3
ARHGAP31 Rho GTPase activating protein 31
ATAD1 ATPase family, AAA domain containing 1
BCR breakpoint cluster region
BOC BOC cell adhesion associated, oncogene regulated
BRINP2 bone morphogenetic protein/retinoic acid inducible neural-specific 2
C15ORF39 chromosome 15 open reading frame 39
C2ORF16 chromosome 2 open reading frame 16
C8ORF86 chromosome 8 open reading frame 86
CCNG2 cyclin G2
CDYL chromodomain protein, Y-like
CEP68 centrosomal protein 68kDa
CHD9 chromodomain helicase DNA binding protein 9
CNIH1 cornichon family AMPA receptor auxiliary protein 1
CNOT8 CCR4-NOT transcription complex, subunit 8
COPS2 COP9 signalosome subunit 2
COX10 COX10 heme A:farnesyltransferase cytochrome c oxidase assembly factor
CRISPLD2 cysteine-rich secretory protein LCCL domain containing 2
DCLRE1A DNA cross-link repair 1A
DPPA5 developmental pluripotency associated 5
DPY19L2 dpy-19-like 2 (C. elegans)
DSCAM Down syndrome cell adhesion molecule
DUSP9 dual specificity phosphatase 9
ECD ecdysoneless homolog (Drosophila)
EDC3 enhancer of mRNA decapping 3
EFHB EF-hand domain family, member B
EIF2A eukaryotic translation initiation factor 2A, 65kDa
EIF3C eukaryotic translation initiation factor 3, subunit C
EPC2 enhancer of polycomb homolog 2 (Drosophila)
ERCC6L2 excision repair cross-complementation group 6-like 2
F7 coagulation factor VII (serum prothrombin conversion accelerator)
FAM110B family with sequence similarity 110, member B
FAM135A family with sequence similarity 135, member A
FAM160B1 family with sequence similarity 160, member B1
FAM21A family with sequence similarity 21, member A
FAM71D family with sequence similarity 71, member D
FAM84B family with sequence similarity 84, member B
FLJ42627 uncharacterized LOC645644
FLRT2 fibronectin leucine rich transmembrane protein 2
FMNL3 formin-like 3
FOXB2 forkhead box B2
FOXD4L5 forkhead box D4-like 5
FOXO3 forkhead box O3
FOXO3B forkhead box O3B pseudogene
G6PC2 glucose-6-phosphatase, catalytic, 2
GADL1 glutamate decarboxylase-like 1
GALNT13 polypeptide N-acetylgalactosaminyltransferase 13
GH2 growth hormone 2
GPM6A glycoprotein M6A
GPR161 G protein-coupled receptor 161
GRIA2 glutamate receptor, ionotropic, AMPA 2
HCRTR1 hypocretin (orexin) receptor 1
HDX highly divergent homeobox
HNRNPLL heterogeneous nuclear ribonucleoprotein L-like
HSPA13 heat shock protein 70kDa family, member 13
HULC hepatocellular carcinoma up-regulated long non-coding RNA
IBTK inhibitor of Bruton agammaglobulinemia tyrosine kinase
IL17A interleukin 17A
IL19 interleukin 19
IL20 interleukin 20
KAT7 K(lysine) acetyltransferase 7
KCTD3 potassium channel tetramerization domain containing 3
KGFLP1 fibroblast growth factor 7 pseudogene
KIAA1143 KIAA1143
KIAA1161 KIAA1161
KIAA1211 KIAA1211
KIAA1586 KIAA1586
KLHL28 kelch-like family member 28
KLHL40 kelch-like family member 40
KLK15 kallikrein-related peptidase 15
KLKP1 kallikrein pseudogene 1
LDHAL6A lactate dehydrogenase A-like 6A
LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
LHFPL3 lipoma HMGIC fusion partner-like 3
LIMD1 LIM domains containing 1
LINC00207 long intergenic non-protein coding RNA 207
LINC00593 long intergenic non-protein coding RNA 593
LMOD3 leiomodin 3 (fetal)
LOC145837
LPO lactoperoxidase
LRRIQ4 leucine-rich repeats and IQ motif containing 4
LRRN1 leucine rich repeat neuronal 1
LRRTM2 leucine rich repeat transmembrane neuronal 2
LRRTM3 leucine rich repeat transmembrane neuronal 3
MB21D2 Mab-21 domain containing 2
METTL10 methyltransferase like 10
MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
MRPL30 mitochondrial ribosomal protein L30
MRPL35 mitochondrial ribosomal protein L35
MYO10 myosin X
N6AMT1 N-6 adenine-specific DNA methyltransferase 1 (putative)
NEDD9 neural precursor cell expressed, developmentally down-regulated 9
NFYA nuclear transcription factor Y, alpha
NLGN4Y neuroligin 4, Y-linked
NREP neuronal regeneration related protein
OPN4 opsin 4
OR11H6 olfactory receptor, family 11, subfamily H, member 6
OR1B1 olfactory receptor, family 1, subfamily B, member 1 (gene/pseudogene)
OR51Q1 olfactory receptor, family 51, subfamily Q, member 1 (gene/pseudogene)
OR7D4 olfactory receptor, family 7, subfamily D, member 4
OSBPL8 oxysterol binding protein-like 8
PCDHA1 protocadherin alpha 1
PCDHA4 protocadherin alpha 4
PCDHB16 protocadherin beta 16
PCDHGA6 protocadherin gamma subfamily A, 6
PCDHGB7 protocadherin gamma subfamily B, 7
PHAX phosphorylated adaptor for RNA export
PHYHIPL phytanoyl-CoA 2-hydroxylase interacting protein-like
PPP1R14C protein phosphatase 1, regulatory (inhibitor) subunit 14C
PROP1 PROP paired-like homeobox 1
PSG3 pregnancy specific beta-1-glycoprotein 3
PSG4 pregnancy specific beta-1-glycoprotein 4
PTCH1 patched 1
RGMB repulsive guidance molecule family member b
RNF150 ring finger protein 150
RNF217-AS1 RNF217 antisense RNA 1 (head to head)
SCML2 sex comb on midleg-like 2 (Drosophila)
SEZ6L seizure related 6 homolog (mouse)-like
SIRT1 sirtuin 1
SKIV2L2 superkiller viralicidic activity 2-like 2 (S. cerevisiae)
SLAIN1 SLAIN motif family, member 1
SLC24A3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
SLC30A9 solute carrier family 30 (zinc transporter), member 9
SLC35D3 solute carrier family 35, member D3
SLC39A9 solute carrier family 39, member 9
SLIT1 slit homolog 1 (Drosophila)
SMCR5 Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding)
SMOC1 SPARC related modular calcium binding 1
SNAPC3 small nuclear RNA activating complex, polypeptide 3, 50kDa
SNORA44 small nucleolar RNA, H/ACA box 44
SOCS5 suppressor of cytokine signaling 5
SPAG11B sperm associated antigen 11B
SPIN3 spindlin family, member 3
SPO11 SPO11 meiotic protein covalently bound to DSB
SRI sorcin
SSX7 synovial sarcoma, X breakpoint 7
ST6GAL2 ST6 beta-galactosamide alpha-2,6-sialyltranferase 2
TAC1 tachykinin, precursor 1
TADA1 transcriptional adaptor 1
TAL2 T-cell acute lymphocytic leukemia 2
TBX22 T-box 22
TCAIM T cell activation inhibitor, mitochondrial
TCF12 transcription factor 12
TET1 tet methylcytosine dioxygenase 1
TLX1NB TLX1 neighbor
TMA16 translation machinery associated 16 homolog (S. cerevisiae)
TMCO2 transmembrane and coiled-coil domains 2
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
TREX2 three prime repair exonuclease 2
TRIM67 tripartite motif containing 67
TRIM9 tripartite motif containing 9
TRMT1L tRNA methyltransferase 1 homolog (S. cerevisiae)-like
TRPC3 transient receptor potential cation channel, subfamily C, member 3
TSPAN32 tetraspanin 32
TUBGCP4 tubulin, gamma complex associated protein 4
UNC79 unc-79 homolog (C. elegans)
USPL1 ubiquitin specific peptidase like 1
VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
VSX2 visual system homeobox 2
XYLT1 xylosyltransferase I
YAF2 YY1 associated factor 2
ZBTB16 zinc finger and BTB domain containing 16
ZC2HC1A zinc finger, C2HC-type containing 1A
ZFAT-AS1 ZFAT antisense RNA 1
ZFP37 ZFP37 zinc finger protein
ZMIZ1 zinc finger, MIZ-type containing 1
ZNF254 zinc finger protein 254
ZNF484 zinc finger protein 484
ZNF501 zinc finger protein 501
ZNF675 zinc finger protein 675
ZNF676 zinc finger protein 676
ZNF737 zinc finger protein 737
ZNF99 zinc finger protein 99
ZSWIM6 zinc finger, SWIM-type containing 6
ZXDB zinc finger, X-linked, duplicated B

low expression

Symbol Name
ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
TYW3 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)