Brain Lower Grade Glioma_LGG_TCGA-DB-5275-01A-01R-1470-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

367 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-DB-5275-01A-01R-1470-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ACOXL acyl-CoA oxidase-like
ACSM4 acyl-CoA synthetase medium-chain family member 4
ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5
ADD1 adducin 1 (alpha)
AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
AKIRIN2 akirin 2
AKNAD1 AKNA domain containing 1
ALKBH1 alkB, alkylation repair homolog 1 (E. coli)
ANKRD6 ankyrin repeat domain 6
ANP32C acidic (leucine-rich) nuclear phosphoprotein 32 family, member C
APBA2 amyloid beta (A4) precursor protein-binding, family A, member 2
APOC1P1 apolipoprotein C-I pseudogene 1
APPL2 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
ARHGAP39 Rho GTPase activating protein 39
ARHGEF38 Rho guanine nucleotide exchange factor (GEF) 38
ARHGEF6 Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
ARTN artemin
ASUN asunder spermatogenesis regulator
ATG10 autophagy related 10
BAG3 BCL2-associated athanogene 3
BANP BTG3 associated nuclear protein
BARHL1 BarH-like homeobox 1
BRD7P3 bromodomain containing 7 pseudogene 3
BTF3P11 basic transcription factor 3 pseudogene 11
C11ORF71 chromosome 11 open reading frame 71
C12ORF54 chromosome 12 open reading frame 54
C12ORF60 chromosome 12 open reading frame 60
C14ORF132 chromosome 14 open reading frame 132
C15ORF32 chromosome 15 open reading frame 32
C16ORF72 chromosome 16 open reading frame 72
C17ORF100 chromosome 17 open reading frame 100
C1ORF94 chromosome 1 open reading frame 94
C1QTNF3 C1q and tumor necrosis factor related protein 3
C2ORF78 chromosome 2 open reading frame 78
C6ORF10 chromosome 6 open reading frame 10
C6ORF226 chromosome 6 open reading frame 226
C9ORF153 chromosome 9 open reading frame 153
C9ORF163 chromosome 9 open reading frame 163
CCDC116 coiled-coil domain containing 116
CCDC7 coiled-coil domain containing 7
CCL2 chemokine (C-C motif) ligand 2
CCNE1 cyclin E1
CD2BP2 CD2 (cytoplasmic tail) binding protein 2
CD9 CD9 molecule
CDH7 cadherin 7, type 2
CDKN2AIPNL CDKN2A interacting protein N-terminal like
CDRT1 CMT1A duplicated region transcript 1
CELP carboxyl ester lipase pseudogene
CHMP7 charged multivesicular body protein 7
CHRNA3 cholinergic receptor, nicotinic, alpha 3 (neuronal)
CIT citron rho-interacting serine/threonine kinase
CLK2P1 CDC-like kinase 2, pseudogene 1
CMKLR1 chemerin chemokine-like receptor 1
CNKSR3 CNKSR family member 3
CPLX4 complexin 4
CPSF7 cleavage and polyadenylation specific factor 7, 59kDa
CSDC2 cold shock domain containing C2, RNA binding
CSF1 colony stimulating factor 1 (macrophage)
CSNK1A1L casein kinase 1, alpha 1-like
CSRNP1 cysteine-serine-rich nuclear protein 1
CSRP2 cysteine and glycine-rich protein 2
CST5 cystatin D
CT62 cancer/testis antigen 62
CTH cystathionine gamma-lyase
CUZD1 CUB and zona pellucida-like domains 1
CYP2J2 cytochrome P450, family 2, subfamily J, polypeptide 2
DCX doublecortin
DDX4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
DDX59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
DEFA4 defensin, alpha 4, corticostatin
DEFB125 defensin, beta 125
DGKD diacylglycerol kinase, delta 130kDa
DKFZP434H168 uncharacterized LOC26077
DLL3 delta-like 3 (Drosophila)
DNMBP-AS1 DNMBP antisense RNA 1
DRD2 dopamine receptor D2
EDARADD EDAR-associated death domain
EFHB EF-hand domain family, member B
EGR1 early growth response 1
EHD1 EH-domain containing 1
EIF3IP1 eukaryotic translation initiation factor 3, subunit I pseudogene 1
EYA1 EYA transcriptional coactivator and phosphatase 1
EYS eyes shut homolog (Drosophila)
FAM118A family with sequence similarity 118, member A
FAM133A family with sequence similarity 133, member A
FAM182A family with sequence similarity 182, member A
FAM24B family with sequence similarity 24, member B
FAM27B family with sequence similarity 27, member B
FAM27C family with sequence similarity 27, member C
FAM57B family with sequence similarity 57, member B
FAM69A family with sequence similarity 69, member A
FAM71D family with sequence similarity 71, member D
FAM92A1P2 family with sequence similarity 92, member A3
FBXL14 F-box and leucine-rich repeat protein 14
FBXO4 F-box protein 4
FGF17 fibroblast growth factor 17
FLJ13224 uncharacterized LOC79857
FLJ37201 tigger transposable element derived 2 pseudogene
FLVCR2 feline leukemia virus subgroup C cellular receptor family, member 2
FNDC8 fibronectin type III domain containing 8
FOXD3 forkhead box D3
FOXJ2 forkhead box J2
FOXR1 forkhead box R1
FRMD3 FERM domain containing 3
FSCN3 fascin actin-bundling protein 3, testicular
FUNDC2P2 FUN14 domain containing 2 pseudogene 2
FXN frataxin
GABRR2 gamma-aminobutyric acid (GABA) A receptor, rho 2
GADD45B growth arrest and DNA-damage-inducible, beta
GALNT8 polypeptide N-acetylgalactosaminyltransferase 8
GATA2 GATA binding protein 2
GCFC2 GC-rich sequence DNA-binding factor 2
GDF9 growth differentiation factor 9
GDPGP1 GDP-D-glucose phosphorylase 1
GJA8 gap junction protein, alpha 8, 50kDa
GMCL1P1 germ cell-less, spermatogenesis associated 1 pseudogene 1
GOLGA2P3Y golgin A2 pseudogene 3, Y-linked
GOLGA6D golgin A6 family, member D
GPR19 G protein-coupled receptor 19
GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2
GRHL2 grainyhead-like 2 (Drosophila)
GRHL3 grainyhead-like 3 (Drosophila)
GRXCR1 glutaredoxin, cysteine rich 1
GSPT2 G1 to S phase transition 2
GSTM2P1 glutathione S-transferase mu 2 (muscle) pseudogene 1
GTSE1-AS1 GTSE1 antisense RNA 1 (head to head)
GUSBP4 glucuronidase, beta pseudogene 4
HECTD2 HECT domain containing E3 ubiquitin protein ligase 2
HEY1 hes-related family bHLH transcription factor with YRPW motif 1
HIST3H2BB histone cluster 3, H2bb
HOXD8 homeobox D8
HPX hemopexin
HSP90B3P heat shock protein 90kDa beta (Grp94), member 3, pseudogene
HSPA1L heat shock 70kDa protein 1-like
HTATSF1 HIV-1 Tat specific factor 1
IFNA14 interferon, alpha 14
IFNA4 interferon, alpha 4
IFNA5 interferon, alpha 5
IGFBPL1 insulin-like growth factor binding protein-like 1
IL12A interleukin 12A
IL3 interleukin 3
ING4 inhibitor of growth family, member 4
IPW imprinted in Prader-Willi syndrome (non-protein coding)
IRX6 iroquois homeobox 6
JMJD6 jumonji domain containing 6
JUNB jun B proto-oncogene
KHDC1L KH homology domain containing 1-like
KIAA0226 KIAA0226
KIAA1257 KIAA1257
KIAA1456 KIAA1456
KIAA1683 KIAA1683
KRT28 keratin 28, type I
KRT39 keratin 39, type I
KRTAP13-4 keratin associated protein 13-4
LASP1 LIM and SH3 protein 1
LCE1D late cornified envelope 1D
LIM2 lens intrinsic membrane protein 2, 19kDa
LINC00029 long intergenic non-protein coding RNA 29
LINC00160 long intergenic non-protein coding RNA 160
LINC00242 long intergenic non-protein coding RNA 242
LINC01550 long intergenic non-protein coding RNA 1550
LMO3 LIM domain only 3 (rhombotin-like 2)
LNP1 leukemia NUP98 fusion partner 1
LOC100130264 uncharacterized LOC100130264
LOC100132831 A20-binding inhibitor of NF-kappaB activation 2 pseudogene
LOC143188 uncharacterized LOC143188
LOC283922 pyruvate dehydrogenase phosphatase regulatory subunit pseudogene
LOC285593 uncharacterized LOC285593
LOC286238 uncharacterized LOC286238
LOC399815 chromosome 10 open reading frame 88 pseudogene
LOC400940 uncharacterized LOC400940
LOC407835 mitogen-activated protein kinase kinase 2 pseudogene
LOC494141 solute carrier family 25, member 51 pseudogene
LOC649330
LOC727896 cysteine and histidine-rich domain (CHORD) containing 1 pseudogene
LOC91450 uncharacterized LOC91450
LPL lipoprotein lipase
LPPR1 lipid phosphate phosphatase-related protein type 1
LRFN1 leucine rich repeat and fibronectin type III domain containing 1
LRIT2 leucine-rich repeat, immunoglobulin-like and transmembrane domains 2
LSM12 LSM12 homolog (S. cerevisiae)
MAGED1 melanoma antigen family D1
MASP1 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
MIMT1 MER1 repeat containing imprinted transcript 1 (non-protein coding)
MKRN3 makorin ring finger protein 3
MLLT4-AS1 MLLT4 antisense RNA 1 (head to head)
MORC2 MORC family CW-type zinc finger 2
MORC2-AS1 MORC2 antisense RNA 1
MYCL v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog
MYF6 myogenic factor 6 (herculin)
NACA2 nascent polypeptide-associated complex alpha subunit 2
NANOS2 nanos homolog 2 (Drosophila)
NAV2 neuron navigator 2
NEURL3 neuralized E3 ubiquitin protein ligase 3
NEUROD1 neuronal differentiation 1
NEUROD4 neuronal differentiation 4
NHEG1 neuroblastoma highly expressed 1
NHLH1 nescient helix loop helix 1
NKAPL NFKB activating protein-like
NLRP5 NLR family, pyrin domain containing 5
NME2P1 NME/NM23 nucleoside diphosphate kinase 2 pseudogene 1
NMNAT2 nicotinamide nucleotide adenylyltransferase 2
NMUR2 neuromedin U receptor 2
NPC1L1 NPC1-like 1
NXPH1 neurexophilin 1
OR11H6 olfactory receptor, family 11, subfamily H, member 6
OR13G1 olfactory receptor, family 13, subfamily G, member 1
OR2L8 olfactory receptor, family 2, subfamily L, member 8 (gene/pseudogene)
OR8S1 olfactory receptor, family 8, subfamily S, member 1
OXT oxytocin/neurophysin I prepropeptide
PA2G4P4 proliferation-associated 2G4 pseudogene 4
PABPC3 poly(A) binding protein, cytoplasmic 3
PASD1 PAS domain containing 1
PATL2 protein associated with topoisomerase II homolog 2 (yeast)
PCDH19 protocadherin 19
PCDHB2 protocadherin beta 2
PCDHGA8 protocadherin gamma subfamily A, 8
PCDHGB4 protocadherin gamma subfamily B, 4
PCF11 PCF11 cleavage and polyadenylation factor subunit
PCSK2 proprotein convertase subtilisin/kexin type 2
PCTP phosphatidylcholine transfer protein
PDCD1 programmed cell death 1
PDHA2 pyruvate dehydrogenase (lipoamide) alpha 2
PEA15 phosphoprotein enriched in astrocytes 15
PHC1 polyhomeotic homolog 1 (Drosophila)
PIN1P1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1
PIPSL PIP5K1A and PSMD4-like, pseudogene
PLEKHA8P1 pleckstrin homology domain containing, family A member 8 pseudogene 1
PMCHL2 pro-melanin-concentrating hormone-like 2, pseudogene
PNPLA1 patatin-like phospholipase domain containing 1
POLR3F polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
POTEE POTE ankyrin domain family, member E
POTEF POTE ankyrin domain family, member F
POTEM POTE ankyrin domain family, member M
POU2F1 POU class 2 homeobox 1
PPP1R11 protein phosphatase 1, regulatory (inhibitor) subunit 11
PRAMEF2 PRAME family member 2
PRB3 proline-rich protein BstNI subfamily 3
PROKR1 prokineticin receptor 1
PROZ protein Z, vitamin K-dependent plasma glycoprotein
PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1
PRR23A proline rich 23A
PRR23B proline rich 23B
PRR25 proline rich 25
PRR34 proline rich 34
PRR4 proline rich 4 (lacrimal)
PTTG3P pituitary tumor-transforming 3, pseudogene
PURG purine-rich element binding protein G
PWARSN Prader Willi/Angelman region RNA, SNRPN neighbor
RBP2 retinol binding protein 2, cellular
REPS1 RALBP1 associated Eps domain containing 1
RFPL4B ret finger protein-like 4B
RIMKLB ribosomal modification protein rimK-like family member B
RIPPLY1 ripply transcriptional repressor 1
RNF217-AS1 RNF217 antisense RNA 1 (head to head)
RNF39 ring finger protein 39
RNF5P1 ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1
RPA4 replication protein A4, 30kDa
RPL19P12 ribosomal protein L19 pseudogene 12
RPL3L ribosomal protein L3-like
RWDD2A RWD domain containing 2A
RXRG retinoid X receptor, gamma
SBF1P1 SET binding factor 1 pseudogene 1
SCGB2B2 secretoglobin, family 2B, member 2
SCUBE2 signal peptide, CUB domain, EGF-like 2
SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
SERTAD1 SERTA domain containing 1
SF3A1 splicing factor 3a, subunit 1, 120kDa
SFTPD surfactant protein D
SGCG sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)
SLC22A20 solute carrier family 22, member 20
SLC35D3 solute carrier family 35, member D3
SLC35E4 solute carrier family 35, member E4
SLC35G6 solute carrier family 35, member G6
SLC39A11 solute carrier family 39, member 11
SLC39A14 solute carrier family 39 (zinc transporter), member 14
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2
SLITRK6 SLIT and NTRK-like family, member 6
SNAR-F small ILF3/NF90-associated RNA F
SNCAIP synuclein, alpha interacting protein
SNHG10 small nucleolar RNA host gene 10
SNORA15 small nucleolar RNA, H/ACA box 15
SNORA28 small nucleolar RNA, H/ACA box 28
SNORA58 small nucleolar RNA, H/ACA box 58
SNORA62 small nucleolar RNA, H/ACA box 62
SNORA78 small nucleolar RNA, H/ACA box 78
SNTG1 syntrophin, gamma 1
SNX11 sorting nexin 11
SNX27 sorting nexin family member 27
SOX11 SRY (sex determining region Y)-box 11
SPDYE4 speedy/RINGO cell cycle regulator family member E4
SPIB Spi-B transcription factor (Spi-1/PU.1 related)
SPRR4 small proline-rich protein 4
SRF serum response factor (c-fos serum response element-binding transcription factor)
STAMBPL1 STAM binding protein-like 1
STATH statherin
STRAP serine/threonine kinase receptor associated protein
STRIP1 striatin interacting protein 1
TAS2R1 taste receptor, type 2, member 1
TAS2R43 taste receptor, type 2, member 43
TAS2R7 taste receptor, type 2, member 7
TBC1D3P1-DHX40P1 TBC1D3P1-DHX40P1 readthrough transcribed pseudogene
TBP TATA box binding protein
TCTE3 t-complex-associated-testis-expressed 3
TDRD12 tudor domain containing 12
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
TFAP2E transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon)
TIMP4 TIMP metallopeptidase inhibitor 4
TLR9 toll-like receptor 9
TMEM132C transmembrane protein 132C
TMEM133 transmembrane protein 133
TNFAIP8L3 tumor necrosis factor, alpha-induced protein 8-like 3
TNFRSF8 tumor necrosis factor receptor superfamily, member 8
TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b
TNIP2 TNFAIP3 interacting protein 2
TPD52L3 tumor protein D52-like 3
TPPP2 tubulin polymerization-promoting protein family member 2
TPST2 tyrosylprotein sulfotransferase 2
TRIM16 tripartite motif containing 16
TRIM16L tripartite motif containing 16-like
TRIM64 tripartite motif containing 64
TRMT61B tRNA methyltransferase 61B
TSPY1 testis specific protein, Y-linked 1
TSPY2 testis specific protein, Y-linked 2
TTF1 transcription termination factor, RNA polymerase I
TTTY14 testis-specific transcript, Y-linked 14 (non-protein coding)
TTTY6 testis-specific transcript, Y-linked 6 (non-protein coding)
TUBB8 tubulin, beta 8 class VIII
UBE2NL ubiquitin-conjugating enzyme E2N-like (gene/pseudogene)
UBE2V1 ubiquitin-conjugating enzyme E2 variant 1
UPK2 uroplakin 2
USP44 ubiquitin specific peptidase 44
VCX variable charge, X-linked
VPS13D vacuolar protein sorting 13 homolog D (S. cerevisiae)
VPS37B vacuolar protein sorting 37 homolog B (S. cerevisiae)
WBP11 WW domain binding protein 11
WBP11P1 WW domain binding protein 11 pseudogene 1
WDR20 WD repeat domain 20
WISP2 WNT1 inducible signaling pathway protein 2
XPNPEP2 X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound
ZBED8 zinc finger, BED-type containing 8
ZBTB12 zinc finger and BTB domain containing 12
ZNF30 zinc finger protein 30
ZNF346 zinc finger protein 346
ZNF362 zinc finger protein 362
ZNF410 zinc finger protein 410
ZNF438 zinc finger protein 438
ZNF599 zinc finger protein 599
ZNF823 zinc finger protein 823
ZNF90 zinc finger protein 90
ZNRD1-AS1 ZNRD1 antisense RNA 1
ZSCAN1 zinc finger and SCAN domain containing 1
ZSCAN4 zinc finger and SCAN domain containing 4
ZSCAN9 zinc finger and SCAN domain containing 9

low expression

Symbol Name
COX18 COX18 cytochrome c oxidase assembly factor
GRSF1 G-rich RNA sequence binding factor 1
MED4 mediator complex subunit 4
OCIAD1 OCIA domain containing 1
PDHB pyruvate dehydrogenase (lipoamide) beta
RCHY1 ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase
SELT selenoprotein T
TMEM177 transmembrane protein 177
UBB ubiquitin B
UFSP2 UFM1-specific peptidase 2
USP4 ubiquitin specific peptidase 4 (proto-oncogene)
UTP3 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)