BFTC-909 Gene Set

Dataset Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles
Category genomics
Type cell line
Description disease: carcinoma, transitional cell (Cell Line Ontology, CLO_0001949)
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Genes

158 genes mutated in the BFTC-909 cell line from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles dataset.

Symbol Name
ADAM10 ADAM metallopeptidase domain 10
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1
ADD3 adducin 3 (gamma)
ANKRD52 ankyrin repeat domain 52
APOL2 apolipoprotein L, 2
AQP1 aquaporin 1 (Colton blood group)
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila)
ATP11A ATPase, class VI, type 11A
ATP5D ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
BCL9L B-cell CLL/lymphoma 9-like
C1QTNF1 C1q and tumor necrosis factor related protein 1
C5ORF63 chromosome 5 open reading frame 63
CDK13 cyclin-dependent kinase 13
CENPW centromere protein W
CEP97 centrosomal protein 97kDa
CHD9 chromodomain helicase DNA binding protein 9
COL5A2 collagen, type V, alpha 2
COL6A3 collagen, type VI, alpha 3
CRTC3 CREB regulated transcription coactivator 3
CTH cystathionine gamma-lyase
CUX1 cut-like homeobox 1
CWC22 CWC22 spliceosome-associated protein
DAB2 Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
DCAF8 DDB1 and CUL4 associated factor 8
DCTN1 dynactin 1
DEPDC5 DEP domain containing 5
DNMT3L DNA (cytosine-5-)-methyltransferase 3-like
DPP7 dipeptidyl-peptidase 7
DPYD dihydropyrimidine dehydrogenase
DUSP10 dual specificity phosphatase 10
DZIP1L DAZ interacting zinc finger protein 1-like
EDC4 enhancer of mRNA decapping 4
EEF2 eukaryotic translation elongation factor 2
EEFSEC eukaryotic elongation factor, selenocysteine-tRNA-specific
EHBP1L1 EH domain binding protein 1-like 1
EIF2B4 eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa
EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1
EML4 echinoderm microtubule associated protein like 4
ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)
FAM188B family with sequence similarity 188, member B
FAM65A family with sequence similarity 65, member A
FARSB phenylalanyl-tRNA synthetase, beta subunit
FBN1 fibrillin 1
FBRSL1 fibrosin-like 1
FGFR1OP2 FGFR1 oncogene partner 2
FKBP3 FK506 binding protein 3, 25kDa
FNDC3B fibronectin type III domain containing 3B
FUT4 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)
GARS glycyl-tRNA synthetase
GGACT gamma-glutamylamine cyclotransferase
GPRIN1 G protein regulated inducer of neurite outgrowth 1
GSE1 Gse1 coiled-coil protein
GTPBP4 GTP binding protein 4
GZF1 GDNF-inducible zinc finger protein 1
HARS histidyl-tRNA synthetase
HCFC1 host cell factor C1
HECTD4 HECT domain containing E3 ubiquitin protein ligase 4
HIRA histone cell cycle regulator
HNRNPF heterogeneous nuclear ribonucleoprotein F
ICAM5 intercellular adhesion molecule 5, telencephalin
INPP4A inositol polyphosphate-4-phosphatase, type I, 107kDa
KANSL3 KAT8 regulatory NSL complex subunit 3
KIAA1024 KIAA1024
KIAA1429 KIAA1429
KIAA1522 KIAA1522
KIF26B kinesin family member 26B
KIF3A kinesin family member 3A
LOXL1 lysyl oxidase-like 1
LRRC8B leucine rich repeat containing 8 family, member B
LYST lysosomal trafficking regulator
MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast)
MATN2 matrilin 2
MED13 mediator complex subunit 13
MEGF8 multiple EGF-like-domains 8
MKNK2 MAP kinase interacting serine/threonine kinase 2
MKRN2 makorin ring finger protein 2
MRC2 mannose receptor, C type 2
MTF1 metal-regulatory transcription factor 1
MYO18A myosin XVIIIA
MZF1 myeloid zinc finger 1
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive
NGLY1 N-glycanase 1
NIPAL2 NIPA-like domain containing 2
NOL8 nucleolar protein 8
NOP56 NOP56 ribonucleoprotein
NPAS2 neuronal PAS domain protein 2
NR1D2 nuclear receptor subfamily 1, group D, member 2
NUP54 nucleoporin 54kDa
OLFML2B olfactomedin-like 2B
OSBPL10 oxysterol binding protein-like 10
PARPBP PARP1 binding protein
PARS2 prolyl-tRNA synthetase 2, mitochondrial (putative)
PBRM1 polybromo 1
PCDHGB7 protocadherin gamma subfamily B, 7
PDS5B PDS5 cohesin associated factor B
PEX6 peroxisomal biogenesis factor 6
PGAP3 post-GPI attachment to proteins 3
PHF14 PHD finger protein 14
PHKB phosphorylase kinase, beta
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
PKD1 polycystic kidney disease 1 (autosomal dominant)
PKHD1L1 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1
PPP1R3D protein phosphatase 1, regulatory subunit 3D
PRKCI protein kinase C, iota
PROCR protein C receptor, endothelial
PTPRB protein tyrosine phosphatase, receptor type, B
PTPRG protein tyrosine phosphatase, receptor type, G
PUS1 pseudouridylate synthase 1
QSER1 glutamine and serine rich 1
RANBP3 RAN binding protein 3
RHBDD3 rhomboid domain containing 3
RPA1 replication protein A1, 70kDa
RPS12 ribosomal protein S12
SAP130 Sin3A-associated protein, 130kDa
SDC3 syndecan 3
SENP3 SUMO1/sentrin/SMT3 specific peptidase 3
SF3A1 splicing factor 3a, subunit 1, 120kDa
SGK494 uncharacterized serine/threonine-protein kinase SgK494
SH3PXD2A SH3 and PX domains 2A
SLC25A39 solute carrier family 25, member 39
SLC26A2 solute carrier family 26 (anion exchanger), member 2
SLC35A5 solute carrier family 35, member A5
SLCO2B1 solute carrier organic anion transporter family, member 2B1
SMG9 SMG9 nonsense mediated mRNA decay factor
SPG11 spastic paraplegia 11 (autosomal recessive)
SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive)
SPHK1 sphingosine kinase 1
SPPL2A signal peptide peptidase like 2A
SPTBN5 spectrin, beta, non-erythrocytic 5
SRCAP Snf2-related CREBBP activator protein
SSBP1 single-stranded DNA binding protein 1, mitochondrial
SUGP1 SURP and G patch domain containing 1
SUN2 Sad1 and UNC84 domain containing 2
TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
TMEM104 transmembrane protein 104
TMEM106A transmembrane protein 106A
TMEM186 transmembrane protein 186
TMEM64 transmembrane protein 64
TP53 tumor protein p53
TULP4 tubby like protein 4
UBA7 ubiquitin-like modifier activating enzyme 7
UBAP1 ubiquitin associated protein 1
UBE2M ubiquitin-conjugating enzyme E2M
UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative)
UHRF1 ubiquitin-like with PHD and ring finger domains 1
USP34 ubiquitin specific peptidase 34
USP40 ubiquitin specific peptidase 40
USP6NL USP6 N-terminal like
UTRN utrophin
WWC3 WWC family member 3
ZBTB48 zinc finger and BTB domain containing 48
ZC3H7A zinc finger CCCH-type containing 7A
ZDBF2 zinc finger, DBF-type containing 2
ZDHHC5 zinc finger, DHHC-type containing 5
ZFHX4 zinc finger homeobox 4
ZNF106 zinc finger protein 106
ZNF185 zinc finger protein 185 (LIM domain)
ZSCAN16 zinc finger and SCAN domain containing 16