639V Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: carcinoma, transitional cell (Cell Line Ontology, CLO_0001448)
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Genes

347 genes with high or low copy number in 639V relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
SLC6A20 solute carrier family 6 (proline IMINO transporter), member 20 2.9564
CCR9 chemokine (C-C motif) receptor 9 2.95458
TIAM1 T-cell lymphoma invasion and metastasis 1 2.74936
LZTFL1 leucine zipper transcription factor-like 1 2.57232
RAB10 RAB10, member RAS oncogene family 2.42549
GAREML GRB2 associated, regulator of MAPK1-like 2.41602
CTNND2 catenin (cadherin-associated protein), delta 2 2.36275
MARCH1 membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase 2.23677
DUSP7 dual specificity phosphatase 7 1.7295
LINC00696 long intergenic non-protein coding RNA 696 1.7295
ITIH1 inter-alpha-trypsin inhibitor heavy chain 1 1.72939
SPCS1 signal peptidase complex subunit 1 homolog (S. cerevisiae) 1.72914
SNORD69 small nucleolar RNA, C/D box 69 1.72914
NEK4 NIMA-related kinase 4 1.72914
SNORD19 small nucleolar RNA, C/D box 19 1.72914
SNORD19B small nucleolar RNA, C/D box 19B 1.72914
GNL3 guanine nucleotide binding protein-like 3 (nucleolar) 1.72914
GLT8D1 glycosyltransferase 8 domain containing 1 1.72914
IQCF4 IQ motif containing F5 pseudogene 1.72845
IQCF6 IQ motif containing F6 1.72845
GRM2 glutamate receptor, metabotropic 2 1.72845
TEX264 testis expressed 264 1.72845
IQCF3 IQ motif containing F3 1.72845
IQCF5 IQ motif containing F5 1.72688
IQCF1 IQ motif containing F1 1.72688
IQCF2 IQ motif containing F2 1.72649
VPRBP Vpr (HIV-1) binding protein 1.7164
MANF mesencephalic astrocyte-derived neurotrophic factor 1.71595
RBM15B RNA binding motif protein 15B 1.71595
MIR4787 microRNA 4787 1.71566
C3ORF18 chromosome 3 open reading frame 18 1.70152
HEMK1 HemK methyltransferase family member 1 1.70152
CISH cytokine inducible SH2-containing protein 1.70076
MAPKAPK3 mitogen-activated protein kinase-activated protein kinase 3 1.70076
NPRL2 nitrogen permease regulator-like 2 (S. cerevisiae) 1.69822
TMEM115 transmembrane protein 115 1.69822
ZMYND10 zinc finger, MYND-type containing 10 1.69822
CYB561D2 cytochrome b561 family, member D2 1.69822
ABHD14B abhydrolase domain containing 14B 1.69354
RPL29 ribosomal protein L29 1.69354
ABHD14A abhydrolase domain containing 14A 1.69354
ACY1 aminoacylase 1 1.69354
PCBP4 poly(rC) binding protein 4 1.69354
PARP3 poly (ADP-ribose) polymerase family, member 3 1.69354
GPR62 G protein-coupled receptor 62 1.69354
RRP9 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) 1.69354
GLYCTK glycerate kinase 1.69246
MIR135A1 microRNA 135a-1 1.69246
ABHD14A-ACY1 ABHD14A-ACY1 readthrough (NMD candidate) 1.69243
TMEM110 transmembrane protein 110 1.69032
MUSTN1 musculoskeletal, embryonic nuclear protein 1 1.69032
TMEM110-MUSTN1 TMEM110-MUSTN1 readthrough 1.69032
BAP1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) 1.68973
POC1A POC1 centriolar protein A 1.68941
ITIH3 inter-alpha-trypsin inhibitor heavy chain 3 1.68931
ITIH4 inter-alpha-trypsin inhibitor heavy chain family, member 4 1.68908
RAD54L2 RAD54-like 2 (S. cerevisiae) 1.68778
NAT6 N-acetyltransferase 6 (GCN5-related) 1.68019
IFRD2 interferon-related developmental regulator 2 1.68019
HYAL3 hyaluronoglucosaminidase 3 1.68019
HYAL1 hyaluronoglucosaminidase 1 1.67934
HYAL2 hyaluronoglucosaminidase 2 1.67897
TUSC2 tumor suppressor candidate 2 1.67897
PTH1R parathyroid hormone 1 receptor 1.6757
MYL3 myosin, light chain 3, alkali; ventricular, skeletal, slow 1.67467
NRADDP neurotrophin receptor associated death domain, pseudogene 1.67387
CCDC12 coiled-coil domain containing 12 1.67352
RBM5-AS1 RBM5 antisense RNA 1 1.67085
USP19 ubiquitin specific peptidase 19 1.66827
QARS glutaminyl-tRNA synthetase 1.66827
MIR425 microRNA 425 1.66804
WDR6 WD repeat domain 6 1.66804
IMPDH2 IMP (inosine 5'-monophosphate) dehydrogenase 2 1.66804
DALRD3 DALR anticodon binding domain containing 3 1.66804
MIR191 microRNA 191 1.66804
NDUFAF3 NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 1.66804
MON1A MON1 secretory trafficking family member A 1.66746
MST1R macrophage stimulating 1 receptor 1.66746
NICN1 nicolin 1 1.66729
RBM6 RNA binding motif protein 6 1.6667
P4HTM prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) 1.66667
TCTA T-cell leukemia translocation altered 1.66591
AMT aminomethyltransferase 1.66591
APEH acylaminoacyl-peptide hydrolase 1.66544
MST1 macrophage stimulating 1 1.66544
QRICH1 glutamine-rich 1 1.6654
MIRLET7G microRNA let-7g 1.66477
DAG1 dystroglycan 1 (dystrophin-associated glycoprotein 1) 1.66409
WDR82 WD repeat domain 82 1.66399
CACNA2D2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 1.66235
SCAP SREBF chaperone 1.66213
CDHR4 cadherin-related family member 4 1.66027
TLR9 toll-like receptor 9 1.66019
ALAS1 5'-aminolevulinate synthase 1 1.66019
TWF2 twinfilin actin binding protein 2 1.66019
AMIGO3 adhesion molecule with Ig-like domain 3 1.65966
RNF123 ring finger protein 123 1.65966
GMPPB GDP-mannose pyrophosphorylase B 1.65966
MIR5193 microRNA 5193 1.6595
FAM212A family with sequence similarity 212, member A 1.6595
IP6K1 inositol hexakisphosphate kinase 1 1.65868
DNAH1 dynein, axonemal, heavy chain 1 1.65479
SEMA3G sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G 1.65335
PHF7 PHD finger protein 7 1.65335
TNNC1 troponin C type 1 (slow) 1.65335
NISCH nischarin 1.65335
PBRM1 polybromo 1 1.64978
ELP6 elongator acetyltransferase complex subunit 6 1.6425
RASSF1 Ras association (RalGDS/AF-6) domain family member 1 1.64209
GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 1.64184
SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B 1.64161
LSMEM2 leucine-rich single-pass membrane protein 2 1.64161
C3ORF62 chromosome 3 open reading frame 62 1.64043
MIR4271 microRNA 4271 1.64043
NBEAL2 neurobeachin-like 2 1.63656
KIF15 kinesin family member 15 1.63588
ZNF501 zinc finger protein 501 1.63588
KIAA1143 KIAA1143 1.63588
ZNF502 zinc finger protein 502 1.63588
KLHDC8B kelch domain containing 8B 1.63415
CCDC71 coiled-coil domain containing 71 1.63415
LAMB2 laminin, beta 2 (laminin S) 1.63415
C3ORF84 chromosome 3 open reading frame 84 1.63415
LAMB2P1 laminin, beta 2 pseudogene 1 1.63415
USP4 ubiquitin specific peptidase 4 (proto-oncogene) 1.63241
UBA7 ubiquitin-like modifier activating enzyme 7 1.63238
SETD2 SET domain containing 2 1.63158
CAMKV CaM kinase-like vesicle-associated 1.63146
TRAIP TRAF interacting protein 1.63112
ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 1.62949
BSN bassoon presynaptic cytomatrix protein 1.629
BSN-AS2 BSN antisense RNA 2 (head to head) 1.629
PPM1M protein phosphatase, Mg2+/Mn2+ dependent, 1M 1.62884
ARIH2OS ariadne homolog 2 opposite strand 1.62713
RHOA ras homolog family member A 1.62313
PTPN23 protein tyrosine phosphatase, non-receptor type 23 1.6203
TMEM42 transmembrane protein 42 1.61665
MIR564 microRNA 564 1.61665
STAB1 stabilin 1 1.61646
ZDHHC3 zinc finger, DHHC-type containing 3 1.61621
TGM4 transglutaminase 4 1.61588
KIF9 kinesin family member 9 1.60706
CSPG5 chondroitin sulfate proteoglycan 5 (neuroglycan C) 1.60667
LARS2-AS1 LARS2 antisense RNA 1 1.60619
LIMD1 LIM domains containing 1 1.60461
LIMD1-AS1 LIMD1 antisense RNA 1 1.60461
LARS2 leucyl-tRNA synthetase 2, mitochondrial 1.60402
RBM5 RNA binding motif protein 5 1.60218
MIR1226 microRNA 1226 1.60117
CCDC36 coiled-coil domain containing 36 1.59749
NT5DC2 5'-nucleotidase domain containing 2 1.59524
SMIM4 small integral membrane protein 4 1.59524
GPX1 glutathione peroxidase 1 1.59199
KLHL18 kelch-like family member 18 1.5903
TOPAZ1 testis and ovary specific PAZ domain containing 1 1.58608
CLEC3B C-type lectin domain family 3, member B 1.58509
CDCP1 CUB domain containing protein 1 1.58509
EXOSC7 exosome component 7 1.58509
TMEM158 transmembrane protein 158 (gene/pseudogene) 1.58022
SACM1L SAC1 suppressor of actin mutations 1-like (yeast) 1.57439
GALR1 galanin receptor 1 1.57422
ZNF197 zinc finger protein 197 1.57245
ZNF35 zinc finger protein 35 1.57245
ZNF660 zinc finger protein 660 1.57245
SLC38A3 solute carrier family 38, member 3 1.57155
GNAT1 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 1.57155
SEMA3F sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F 1.57155
DHX30 DEAH (Asp-Glu-Ala-His) box helicase 30 1.57032
SLC25A20 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 1.568
COL7A1 collagen, type VII, alpha 1 1.56769
MIR711 microRNA 711 1.56769
UCN2 urocortin 2 1.56573
PRKAR2A protein kinase, cAMP-dependent, regulatory, type II, alpha 1.56565
ZNF236 zinc finger protein 236 1.56066
SELK selenoprotein K 1.5602
ACTR8 ARP8 actin-related protein 8 homolog (yeast) 1.5602
CHDH choline dehydrogenase 1.55934
MIR138-1 microRNA 138-1 1.55782
DOCK3 dedicator of cytokinesis 3 1.55397
NCKIPSD NCK interacting protein with SH3 domain 1.55242
KIF9-AS1 KIF9 antisense RNA 1 1.55163
TMEM89 transmembrane protein 89 1.54815
SLC26A6 solute carrier family 26 (anion exchanger), member 6 1.54815
FBXW12 F-box and WD repeat domain containing 12 1.5469
UQCRC1 ubiquinol-cytochrome c reductase core protein I 1.54465
ABHD5 abhydrolase domain containing 5 1.54314
PRSS42 protease, serine, 42 1.54253
RFT1 RFT1 homolog (S. cerevisiae) 1.54229
MBP myelin basic protein 1.53884
ZNF445 zinc finger protein 445 1.53314
TCAIM T cell activation inhibitor, mitochondrial 1.53314
SPATA12 spermatogenesis associated 12 1.53299
PRKCD protein kinase C, delta 1.5329
IL17RB interleukin 17 receptor B 1.53191
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 1.53123
MIR4793 microRNA 4793 1.53123
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 1.531
CAMP cathelicidin antimicrobial peptide 1.52967
MIR4443 microRNA 4443 1.52959
CACNA2D3-AS1 CACNA2D3 antisense RNA 1 1.52943
LRTM1 leucine-rich repeats and transmembrane domains 1 1.52902
IP6K2 inositol hexakisphosphate kinase 2 1.52627
TREX1 three prime repair exonuclease 1 1.52419
ZKSCAN7 zinc finger with KRAB and SCAN domains 7 1.52371
SNRK SNF related kinase 1.52313
WNT5A wingless-type MMTV integration site family, member 5A 1.52074
ODF4 outer dense fiber of sperm tails 4 1.51971
PDE12 phosphodiesterase 12 1.51871
FAM208A family with sequence similarity 208, member A 1.51579
SPINK8 serine peptidase inhibitor, Kazal type 8 (putative) 1.51575
NME6 NME/NM23 nucleoside diphosphate kinase 6 1.51575
CCDC66 coiled-coil domain containing 66 1.51358
ATRIP ATR interacting protein 1.51313
PLXNB1 plexin B1 1.51313
CCDC51 coiled-coil domain containing 51 1.51313
TMA7 translation machinery associated 7 homolog (S. cerevisiae) 1.51313
CDC25A cell division cycle 25A 1.51207
HESX1 HESX homeobox 1 1.50937
ASB14 ankyrin repeat and SOCS box containing 14 1.50855
ARHGEF3-AS1 ARHGEF3 antisense RNA 1 1.50808
MAP4 microtubule-associated protein 4 1.5077
DENND6A DENN/MADD domain containing 6A 1.50672
IL17RD interleukin 17 receptor D 1.50642
ARF4 ADP-ribosylation factor 4 1.50618
CACNA1D calcium channel, voltage-dependent, L type, alpha 1D subunit 1.50532
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 1.50483
ZNF589 zinc finger protein 589 1.50465
ESRG embryonic stem cell related (non-protein coding) 1.504
SNRK-AS1 SNRK antisense RNA 1 1.49834
ANO10 anoctamin 10 1.49646
APPL1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 1.48408
SHISA5 shisa family member 5 1.48061
TKT transketolase 1.47975
SEC22C SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 1.47671
POMGNT2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) 1.47656
SS18L2 synovial sarcoma translocation gene on chromosome 18-like 2 1.47639
VIPR1 vasoactive intestinal peptide receptor 1 1.47634
FAM198A family with sequence similarity 198, member A 1.47579
ERC2-IT1 ERC2 intronic transcript 1 1.4705
DNAH12 dynein, axonemal, heavy chain 12 1.45929
ARHGEF3 Rho guanine nucleotide exchange factor (GEF) 3 1.45727
LINC01193 long intergenic non-protein coding RNA 1193 1.45586
LYZL4 lysozyme-like 4 1.45478
HIGD1A HIG1 hypoxia inducible domain family, member 1A 1.44419
ACKR2 atypical chemokine receptor 2 1.4441
KRBOX1 KRAB box domain containing 1 1.4441
CYP8B1 cytochrome P450, family 8, subfamily B, polypeptide 1 1.4441
ZNF662 zinc finger protein 662 1.4441
NKTR natural killer cell triggering receptor 1.44407
SLMAP sarcolemma associated protein 1.43903
CCK cholecystokinin 1.4336
ZBTB47 zinc finger and BTB domain containing 47 1.43196
CCDC13 coiled-coil domain containing 13 1.43184
KLHL40 kelch-like family member 40 1.43184
CCDC13-AS1 CCDC13 antisense RNA 1 1.43184
HHATL hedgehog acyltransferase-like 1.43154
DCP1A decapping mRNA 1A 1.43145
FLNB filamin B, beta 1.42801
ABHD6 abhydrolase domain containing 6 1.4101
DNASE1L3 deoxyribonuclease I-like 3 1.4096
CACNA2D3 calcium channel, voltage-dependent, alpha 2/delta subunit 3 1.40774
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 1.40094
KCTD6 potassium channel tetramerization domain containing 6 1.39991
ACOX2 acyl-CoA oxidase 2, branched chain 1.39969
PDHB pyruvate dehydrogenase (lipoamide) beta 1.3978
RPP14 ribonuclease P/MRP 14kDa subunit 1.39717
EIF1B eukaryotic translation initiation factor 1B 1.38747
MIR3938 microRNA 3938 1.3871
TRAK1 trafficking protein, kinesin binding 1 1.38543
FAM107A family with sequence similarity 107, member A 1.37944
PXK PX domain containing serine/threonine kinase 1.37833
NF1P2 neurofibromin 1 pseudogene 2 1.37155
ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 1.36718
ENTPD3-AS1 ENTPD3 antisense RNA 1 1.36706
RPL14 ribosomal protein L14 1.36472
FAM3D family with sequence similarity 3, member D 1.36453
ZNF619 zinc finger protein 619 1.36438
ZNF621 zinc finger protein 621 1.36438
ZNF620 zinc finger protein 620 1.36438
MOBP myelin-associated oligodendrocyte basic protein 1.35964
EIF1B-AS1 EIF1B antisense RNA 1 1.34922
XCR1 chemokine (C motif) receptor 1 1.34385
CCR1 chemokine (C-C motif) receptor 1 1.34367
SLC25A38 solute carrier family 25, member 38 1.34291
CXCR6 chemokine (C-X-C motif) receptor 6 1.342
SNORA6 small nucleolar RNA, H/ACA box 6 1.33667
SNORA62 small nucleolar RNA, H/ACA box 62 1.33667
RPSA ribosomal protein SA 1.33667
C3ORF67 chromosome 3 open reading frame 67 1.33564
TTC21A tetratricopeptide repeat domain 21A 1.33504
GORASP1 golgi reassembly stacking protein 1, 65kDa 1.33504
XIRP1 xin actin binding repeat containing 1 1.33504
CX3CR1 chemokine (C-X3-C motif) receptor 1 1.3345
CCR8 chemokine (C-C motif) receptor 8 1.3345
SLC15A5 solute carrier family 15, member 5 1.33234
MIR26A1 microRNA 26a-1 1.33122
VILL villin-like 1.33122
PRB2 proline-rich protein BstNI subfamily 2 1.32994

low copy number

Symbol Name Standardized Value
ZNF527 zinc finger protein 527 -3.21049
HKR1 HKR1, GLI-Kruppel zinc finger family member -3.21049
PTRH2 peptidyl-tRNA hydrolase 2 -2.99282
CLTC clathrin, heavy chain (Hc) -2.98802
MGST3 microsomal glutathione S-transferase 3 -2.59447
SFMBT1 Scm-like with four mbt domains 1 -2.59331
CALR3 calreticulin 3 -2.49984
VMP1 vacuole membrane protein 1 -2.33739
FRS2 fibroblast growth factor receptor substrate 2 -2.2019
AEBP2 AE binding protein 2 -2.17937
PTPRJ protein tyrosine phosphatase, receptor type, J -2.16082
PDE4DIP phosphodiesterase 4D interacting protein -2.14562
CD48 CD48 molecule -2.03754
MIR548W microRNA 548w -2.02887
SEC14L1 SEC14-like 1 (S. cerevisiae) -2.00401
SPATA17 spermatogenesis associated 17 -2.00395
CREB5 cAMP responsive element binding protein 5 -1.96693
SH3KBP1 SH3-domain kinase binding protein 1 -1.92896
SPATA45 spermatogenesis associated 45 -1.85954
CTDSPL CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like -1.83945
PPP1R12B protein phosphatase 1, regulatory subunit 12B -1.82576
CT45A5 cancer/testis antigen family 45, member A5 -1.76093
LOC100631378 uncharacterized 100631378 -1.75788
TRIP13 thyroid hormone receptor interactor 13 -1.75204
MCTP2 multiple C2 domains, transmembrane 2 -1.74448
UNC5D unc-5 homolog D (C. elegans) -1.73003
PQLC1 PQ loop repeat containing 1 -1.72743
TXNL4A thioredoxin-like 4A -1.72739
HSBP1L1 heat shock factor binding protein 1-like 1 -1.72739
SALL3 spalt-like transcription factor 3 -1.6831
RBFA ribosome binding factor A (putative) -1.64449
PARD6G-AS1 PARD6G antisense RNA 1 -1.64337
GGT7 gamma-glutamyltransferase 7 -1.60956
ADNP2 ADNP homeobox 2 -1.60913
PARD6G par-6 family cell polarity regulator gamma -1.5762
FAM20C family with sequence similarity 20, member C -1.56767
SYT2 synaptotagmin II -1.55387
IRF8 interferon regulatory factor 8 -1.55052
MTUS2 microtubule associated tumor suppressor candidate 2 -1.54795
NFATC1 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 -1.54646
CCDC60 coiled-coil domain containing 60 -1.53857
ATP9B ATPase, class II, type 9B -1.53663
KLK15 kallikrein-related peptidase 15 -1.48179
SMYD3 SET and MYND domain containing 3 -1.46678
CDH23 cadherin-related 23 -1.42188
CTDP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 -1.40882
LINC01310 long intergenic non-protein coding RNA 1310 -1.39012
GALNTL6 polypeptide N-acetylgalactosaminyltransferase-like 6 -1.34921
SND1 staphylococcal nuclease and tudor domain containing 1 -1.32169