42MGBA Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

208 genes with high or low copy number in 42MGBA relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
CCSER1 coiled-coil serine-rich protein 1 2.59999
ATP2C1 ATPase, Ca++ transporting, type 2C, member 1 1.96412
NEGR1 neuronal growth regulator 1 1.85455
LINC00515 long intergenic non-protein coding RNA 515 1.62702
MIR155 microRNA 155 1.62702
MIR155HG MIR155 host gene 1.62698
GABPA GA binding protein transcription factor, alpha subunit 60kDa 1.6267
JAM2 junctional adhesion molecule 2 1.6267
ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 1.6267
LINC00158 long intergenic non-protein coding RNA 158 1.62542
LOC339622 uncharacterized LOC339622 1.59478
APP amyloid beta (A4) precursor protein 1.59376
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 1.56652
LINC00113 long intergenic non-protein coding RNA 113 1.56627
ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 1.56592
MIR4759 microRNA 4759 1.56592
LINC00314 long intergenic non-protein coding RNA 314 1.54762
MRPL39 mitochondrial ribosomal protein L39 1.54015
CYYR1 cysteine/tyrosine-rich 1 1.53295
D21S2088E D21S2088E 1.51401
LINC00317 long intergenic non-protein coding RNA 317 1.5089
LINC00320 long intergenic non-protein coding RNA 320 1.50291
LINC00308 long intergenic non-protein coding RNA 308 1.50206
TMPRSS15 transmembrane protease, serine 15 1.4572
CHODL-AS1 CHODL antisense RNA 1 1.44433
OR13C5 olfactory receptor, family 13, subfamily C, member 5 1.44422
C21ORF91 chromosome 21 open reading frame 91 1.42963
C21ORF91-OT1 C21orf91 overlapping transcript 1 1.4213
MIRLET7C microRNA let-7c 1.4129
MIR99A microRNA 99a 1.4129
CHODL chondrolectin 1.41265
ASB17 ankyrin repeat and SOCS box containing 17 1.4125
IFI44 interferon-induced protein 44 1.40689
IFI44L interferon-induced protein 44-like 1.40668
PTGFR prostaglandin F receptor (FP) 1.40644
HIAT1 hippocampus abundant transcript 1 1.40113
SLC35A3 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 1.40094
ERBB3 erb-b2 receptor tyrosine kinase 3 1.40092
SASS6 spindle assembly 6 homolog (C. elegans) 1.40066
OR13C2 olfactory receptor, family 13, subfamily C, member 2 1.40019
AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase 1.39976
LRRC39 leucine rich repeat containing 39 1.39849
RNU5E-1 RNA, U5E small nuclear 1 1.39761
RNU5D-1 RNA, U5D small nuclear 1 1.39761
SLC44A5 solute carrier family 44, member 5 1.39511
MSH4 mutS homolog 4 1.3923
SNORD45A small nucleolar RNA, C/D box 45A 1.39211
SNORD45C small nucleolar RNA, C/D box 45C 1.39211
SNORD45B small nucleolar RNA, C/D box 45B 1.39203
ACADM acyl-CoA dehydrogenase, C-4 to C-12 straight chain 1.39203
RABGGTB Rab geranylgeranyltransferase, beta subunit 1.39203
LINC01549 long intergenic non-protein coding RNA 1549 1.39018
DBT dihydrolipoamide branched chain transacylase E2 1.38177
TRMT13 tRNA methyltransferase 13 homolog (S. cerevisiae) 1.38147
DNAJB4 DnaJ (Hsp40) homolog, subfamily B, member 4 1.37725
GIPC2 GIPC PDZ domain containing family, member 2 1.37714
MIR125B2 microRNA 125b-2 1.37656
PIGV phosphatidylinositol glycan anchor biosynthesis, class V 1.37311
ZDHHC18 zinc finger, DHHC-type containing 18 1.37311
CXADR coxsackie virus and adenovirus receptor 1.37201
SFN stratifin 1.37122
BTG3 BTG family, member 3 1.36871
ZZZ3 zinc finger, ZZ-type containing 3 1.36658
ADGRL4 adhesion G protein-coupled receptor L4 1.36435
LHX8 LIM homeobox 8 1.36341
MIR553 microRNA 553 1.36317
RTCA RNA 3'-terminal phosphate cyclase 1.36303
FPGT fucose-1-phosphate guanylyltransferase 1.36023
ARID1A AT rich interactive domain 1A (SWI-like) 1.35988
ERICH3 glutamate-rich 3 1.3597
MIR5698 microRNA 5698 1.35704
PALMD palmdelphin 1.35697
FAM73A family with sequence similarity 73, member A 1.3561
USP33 ubiquitin specific peptidase 33 1.35584
SLC9A1 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 1.35449
ST6GALNAC3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 1.35436
GPATCH3 G patch domain containing 3 1.35352
GPN2 GPN-loop GTPase 2 1.35352
POTEG POTE ankyrin domain family, member G 1.35148
PIGK phosphatidylinositol glycan anchor biosynthesis, class K 1.35022
RPA2 replication protein A2, 32kDa 1.34869
FUBP1 far upstream element (FUSE) binding protein 1 1.34121
NEXN nexilin (F actin binding protein) 1.34109
EXTL2 exostosin-like glycosyltransferase 2 1.3388
NR0B2 nuclear receptor subfamily 0, group B, member 2 1.33743
LPPR4 lipid phosphate phosphatase-related protein type 4 1.33648
MIR1976 microRNA 1976 1.33322
NCAM2 neural cell adhesion molecule 2 1.33237
ST6GALNAC5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 1.33175
LPPR5 lipid phosphate phosphatase-related protein type 5 1.3316
FAM76A family with sequence similarity 76, member A 1.33146
STX12 syntaxin 12 1.33121
PPP1R8 protein phosphatase 1, regulatory subunit 8 1.33121
SCARNA1 small Cajal body-specific RNA 1 1.33121
RPS6KA1 ribosomal protein S6 kinase, 90kDa, polypeptide 1 1.33072
IFI6 interferon, alpha-inducible protein 6 1.32974
GPR88 G protein-coupled receptor 88 1.3297
CDC14A cell division cycle 14A 1.32861

low copy number

Symbol Name Standardized Value
SRBD1 S1 RNA binding domain 1 -3.21049
MGST1 microsomal glutathione S-transferase 1 -3.21049
SYPL1 synaptophysin-like 1 -3.20989
PSIP1 PC4 and SFRS1 interacting protein 1 -2.58517
DDR2 discoidin domain receptor tyrosine kinase 2 -2.3514
CCDC171 coiled-coil domain containing 171 -2.3485
LOC646813 DEAH (Asp-Glu-Ala-His) box helicase 9 pseudogene -2.1875
BNC2 basonuclin 2 -2.17614
C6ORF52 chromosome 6 open reading frame 52 -2.12417
VPS53 vacuolar protein sorting 53 homolog (S. cerevisiae) -2.11897
ULK4 unc-51 like kinase 4 -2.09389
RET ret proto-oncogene -1.9973
EPHX2 epoxide hydrolase 2, cytoplasmic -1.95159
CNTLN centlein, centrosomal protein -1.90349
KGFLP2 keratinocyte growth factor-like protein 2 -1.89779
SH3GL2 SH3-domain GRB2-like 2 -1.80239
FAM134B family with sequence similarity 134, member B -1.78229
LOC441601 septin 7 pseudogene -1.75826
FYCO1 FYVE and coiled-coil domain containing 1 -1.75483
CPNE4 copine IV -1.72276
CCL3L3 chemokine (C-C motif) ligand 3-like 3 -1.66171
CCL3L1 chemokine (C-C motif) ligand 3-like 1 -1.66171
TUSC3 tumor suppressor candidate 3 -1.59209
TSSC1 tumor suppressing subtransferable candidate 1 -1.56127
FOXN1 forkhead box N1 -1.48744
SPAG5-AS1 SPAG5 antisense RNA 1 -1.48742
SPAG5 sperm associated antigen 5 -1.48742
UNC119 unc-119 homolog (C. elegans) -1.48742
PIGS phosphatidylinositol glycan anchor biosynthesis, class S -1.48742
ALDOC aldolase C, fructose-bisphosphate -1.48742
SGK494 uncharacterized serine/threonine-protein kinase SgK494 -1.48742
SLC13A2 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 -1.48685
TMEM236 transmembrane protein 236 -1.48625
PPY2P pancreatic polypeptide 2, pseudogene -1.48372
PYY2 peptide YY, 2 (pseudogene) -1.48361
MIR511 microRNA 511 -1.48074
PDPR pyruvate dehydrogenase phosphatase regulatory subunit -1.46607
TRAF4 TNF receptor-associated factor 4 -1.46274
SNORD42A small nucleolar RNA, C/D box 42A -1.46271
TLCD1 TLC domain containing 1 -1.46271
SNORD4B small nucleolar RNA, C/D box 4B -1.46271
NEK8 NIMA-related kinase 8 -1.46271
SLC46A1 solute carrier family 46 (folate transporter), member 1 -1.46258
TMEM199 transmembrane protein 199 -1.45977
VTN vitronectin -1.45977
SEBOX SEBOX homeobox -1.45977
MIR4723 microRNA 4723 -1.45977
SARM1 sterile alpha and TIR motif containing 1 -1.45965
TNFAIP1 tumor necrosis factor, alpha-induced protein 1 (endothelial) -1.45961
IFT20 intraflagellar transport 20 -1.45961
TMEM97 transmembrane protein 97 -1.45961
KRT18P55 keratin 18 pseudogene 55 -1.45953
NLK nemo-like kinase -1.45928
MRC1 mannose receptor, C type 1 -1.4467
GRIA2 glutamate receptor, ionotropic, AMPA 2 -1.44655
CREB5 cAMP responsive element binding protein 5 -1.44127
MIR144 microRNA 144 -1.44018
ERAL1 Era-like 12S mitochondrial rRNA chaperone 1 -1.44018
MIR451A microRNA 451a -1.44018
MIR4732 microRNA 4732 -1.44018
MIR451B microRNA 451b -1.44018
KIAA0100 KIAA0100 -1.43994
SDF2 stromal cell-derived factor 2 -1.43976
PROCA1 protein interacting with cyclin A1 -1.43974
NARR nine-amino acid residue-repeats -1.43974
RAB34 RAB34, member RAS oncogene family -1.43974
SNORD42B small nucleolar RNA, C/D box 42B -1.43974
SUPT6H suppressor of Ty 6 homolog (S. cerevisiae) -1.43974
RPL23A ribosomal protein L23a -1.43974
SNORD4A small nucleolar RNA, C/D box 4A -1.43974
POLDIP2 polymerase (DNA-directed), delta interacting protein 2 -1.43717
KLRC2 killer cell lectin-like receptor subfamily C, member 2 -1.43654
FMN2 formin 2 -1.4235
KREMEN1 kringle containing transmembrane protein 1 -1.42011
PHF12 PHD finger protein 12 -1.4187
DHRS13 dehydrogenase/reductase (SDR family) member 13 -1.41864
FLOT2 flotillin 2 -1.41864
DPH5 diphthamide biosynthesis 5 -1.41654
CRYBA1 crystallin, beta A1 -1.39927
TIAF1 TGFB1-induced anti-apoptotic factor 1 -1.39914
PIPOX pipecolic acid oxidase -1.39821
FAM222B family with sequence similarity 222, member B -1.39784
SEZ6 seizure related 6 homolog (mouse) -1.37893
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -1.36144
MYO18A myosin XVIIIA -1.36127
CORO6 coronin 6 -1.35287
ABHD15 abhydrolase domain containing 15 -1.35236
GIT1 G protein-coupled receptor kinase interacting ArfGAP 1 -1.35236
TP53I13 tumor protein p53 inducible protein 13 -1.35236
PI4KB phosphatidylinositol 4-kinase, catalytic, beta -1.34229
ZNF687 zinc finger protein 687 -1.34229
MIR554 microRNA 554 -1.34193
CGN cingulin -1.34193
RFX5 regulatory factor X, 5 (influences HLA class II expression) -1.34123
ANKRD13B ankyrin repeat domain 13B -1.33489
TUBBP5 tubulin, beta pseudogene 5 -1.33412
MIR4523 microRNA 4523 -1.33114
TNFAIP8L2 tumor necrosis factor, alpha-induced protein 8-like 2 -1.32993
SEMA6C sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C -1.32993
TNFAIP8L2-SCNM1 TNFAIP8L2-SCNM1 readthrough -1.32993
VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae) -1.32928
TMOD4 tropomodulin 4 (muscle) -1.3288
LYSMD1 LysM, putative peptidoglycan-binding, domain containing 1 -1.3288
SCNM1 sodium channel modifier 1 -1.3288
PSMD4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 -1.32865
PIP5K1A phosphatidylinositol-4-phosphate 5-kinase, type I, alpha -1.32841
SELENBP1 selenium binding protein 1 -1.32299
POGZ pogo transposable element with ZNF domain -1.32266
HIST2H3D histone cluster 2, H3d -1.32211
CTSO cathepsin O -1.32095