2313287 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Similar Terms
Downloads & Tools

Genes

267 genes with high or low copy number in 2313287 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
SPINK5 serine peptidase inhibitor, Kazal type 5 3.17848
PLEKHA6 pleckstrin homology domain containing, family A member 6 2.60115
NUDT4 nudix (nucleoside diphosphate linked moiety X)-type motif 4 2.59995
ZC3H18 zinc finger CCCH-type containing 18 2.5762
MLIP muscular LMNA-interacting protein 2.24989
SDK1 sidekick cell adhesion molecule 1 2.06793
TMEM108 transmembrane protein 108 2.04015
ATP11A ATPase, class VI, type 11A 1.80343
ENY2 enhancer of yellow 2 homolog (Drosophila) 1.67313
NUDCD1 NudC domain containing 1 1.67303
CEP72 centrosomal protein 72kDa 1.66024
EIF3E eukaryotic translation initiation factor 3, subunit E 1.64638
TRHR thyrotropin-releasing hormone receptor 1.63627
EMC2 ER membrane protein complex subunit 2 1.61199
SYBU syntabulin (syntaxin-interacting) 1.59391
KCNV1 potassium channel, voltage gated modifier subfamily V, member 1 1.5867
TMEM74 transmembrane protein 74 1.56248
GPIHBP1 glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 1.54727
EBAG9 estrogen receptor binding site associated, antigen, 9 1.54352
PKHD1L1 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 1.5304
LY6E lymphocyte antigen 6 complex, locus E 1.52257
C8ORF31 chromosome 8 open reading frame 31 1.52243
SNORA37 small nucleolar RNA, H/ACA box 37 1.51954
MBD2 methyl-CpG binding domain protein 2 1.51905
C18ORF54 chromosome 18 open reading frame 54 1.51902
POLI polymerase (DNA directed) iota 1.51902
STARD6 StAR-related lipid transfer (START) domain containing 6 1.51902
ADGRB1 adhesion G protein-coupled receptor B1 1.50083
NBPF9 neuroblastoma breakpoint family, member 9 1.50013
JRK Jrk homolog (mouse) 1.49896
THEM6 thioesterase superfamily member 6 1.49879
SLURP1 secreted LY6/PLAUR domain containing 1 1.49879
LYPD2 LY6/PLAUR domain containing 2 1.49879
ARC activity-regulated cytoskeleton-associated protein 1.49769
CYP11B1 cytochrome P450, family 11, subfamily B, polypeptide 1 1.49729
GML glycosylphosphatidylinositol anchored molecule like 1.49729
PSCA prostate stem cell antigen 1.49725
LOC100288181 uncharacterized LOC100288181 1.49725
LY6K lymphocyte antigen 6 complex, locus K 1.49725
CYP11B2 cytochrome P450, family 11, subfamily B, polypeptide 2 1.49707
LOC100133669 uncharacterized LOC100133669 1.49694
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 1.49442
DYNAP dynactin associated protein 1.49325
PTP4A3 protein tyrosine phosphatase type IVA, member 3 1.49212
MROH5 maestro heat-like repeat family member 5 1.49153
PYCRL pyrroline-5-carboxylate reductase-like 1.49119
TIGD5 tigger transposable element derived 5 1.49103
GSDMD gasdermin D 1.48799
ZC3H3 zinc finger CCCH-type containing 3 1.48182
FAM135B family with sequence similarity 135, member B 1.48063
MAFA v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog A 1.47623
RHPN1-AS1 RHPN1 antisense RNA 1 (head to head) 1.47571
RHPN1 rhophilin, Rho GTPase binding protein 1 1.4757
LINC01300 long intergenic non-protein coding RNA 1300 1.47338
GPR20 G protein-coupled receptor 20 1.47338
CEP170 centrosomal protein 170kDa 1.47337
LY6H lymphocyte antigen 6 complex, locus H 1.47288
ZNF623 zinc finger protein 623 1.47127
NAPRT nicotinate phosphoribosyltransferase 1.47114
TSTA3 tissue specific transplantation antigen P35B 1.47088
MROH6 maestro heat-like repeat family member 6 1.47038
EEF1D eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 1.47023
DENND3 DENN/MADD domain containing 3 1.46255
CHRAC1 chromatin accessibility complex 1 1.46177
LINC00051 long intergenic non-protein coding RNA 51 1.46105
MIR4472-1 microRNA 4472-1 1.46095
TSNARE1 t-SNARE domain containing 1 1.45986
PUF60 poly-U binding splicing factor 60KDa 1.45618
NRBP2 nuclear receptor binding protein 2 1.45618
MIR937 microRNA 937 1.45613
SCRIB scribbled planar cell polarity protein 1.45573
SLC45A4 solute carrier family 45, member 4 1.44916
ZNF696 zinc finger protein 696 1.44522
GLI4 GLI family zinc finger 4 1.44497
ZFP41 ZFP41 zinc finger protein 1.44497
KCNK9 potassium channel, two pore domain subfamily K, member 9 1.4413
FAM83H family with sequence similarity 83, member H 1.4411
MIR4664 microRNA 4664 1.4411
FAM83H-AS1 FAM83H antisense RNA 1 (head to head) 1.44073
TRAPPC9 trafficking protein particle complex 9 1.43987
TOP1MT topoisomerase (DNA) I, mitochondrial 1.43909
AGO2 argonaute RISC catalytic component 2 1.43611
EPPK1 epiplakin 1 1.4343
HSF1 heat shock transcription factor 1 1.42856
SCX scleraxis basic helix-loop-helix transcription factor 1.42856
BOP1 block of proliferation 1 1.42851
DGAT1 diacylglycerol O-acyltransferase 1 1.42822
TMEM249 transmembrane protein 249 1.42797
SCRT1 scratch family zinc finger 1 1.42797
MIR661 microRNA 661 1.42188
CCDC166 coiled-coil domain containing 166 1.4206
BREA2 breast cancer estrogen-induced apoptosis 2 1.4206
MAPK15 mitogen-activated protein kinase 15 1.42038
EXOSC4 exosome component 4 1.41797
KIAA1875 KIAA1875 1.41759
MAF1 MAF1 homolog (S. cerevisiae) 1.41759
CYC1 cytochrome c-1 1.41759
SHARPIN SHANK-associated RH domain interactor 1.41759
GPAA1 glycosylphosphatidylinositol anchor attachment 1 1.41754
SPATC1 spermatogenesis and centriole associated 1 1.41754
PARP10 poly (ADP-ribose) polymerase family, member 10 1.41754
GRINA glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) 1.41754
OPLAH 5-oxoprolinase (ATP-hydrolysing) 1.41744
SLC52A2 solute carrier family 52 (riboflavin transporter), member 2 1.40966
FBXL6 F-box and leucine-rich repeat protein 6 1.40966
PPP1R16A protein phosphatase 1, regulatory subunit 16A 1.4067
ZNF34 zinc finger protein 34 1.40614
ZNF251 zinc finger protein 251 1.40611
LRRC24 leucine rich repeat containing 24 1.40524
C8ORF82 chromosome 8 open reading frame 82 1.40524
RECQL4 RecQ protein-like 4 1.40524
MFSD3 major facilitator superfamily domain containing 3 1.40524
ARHGAP39 Rho GTPase activating protein 39 1.40524
LRRC14 leucine rich repeat containing 14 1.40524
GPT glutamic-pyruvate transaminase (alanine aminotransferase) 1.40491
PLEC plectin 1.40057
ZFAT-AS1 ZFAT antisense RNA 1 1.40026
ZNF707 zinc finger protein 707 1.39991
SLC39A4 solute carrier family 39 (zinc transporter), member 4 1.39747
VPS28 vacuolar protein sorting 28 homolog (S. cerevisiae) 1.39717
MIR2053 microRNA 2053 1.39674
CPSF1 cleavage and polyadenylation specific factor 1, 160kDa 1.39667
MIR1234 microRNA 1234 1.39658
MIR939 microRNA 939 1.39658
ADCK5 aarF domain containing kinase 5 1.39628
TONSL tonsoku-like, DNA repair protein 1.39624
MROH1 maestro heat-like repeat family member 1 1.39587
C8ORF33 chromosome 8 open reading frame 33 1.39553
HGH1 HGH1 homolog (S. cerevisiae) 1.39523
EFR3A EFR3 homolog A (S. cerevisiae) 1.39426
ZNF517 zinc finger protein 517 1.39368
RPL8 ribosomal protein L8 1.3936
COMMD5 COMM domain containing 5 1.39349
ZNF7 zinc finger protein 7 1.39333
ZNF250 zinc finger protein 250 1.3898
FOXH1 forkhead box H1 1.38473
COL22A1 collagen, type XXII, alpha 1 1.3841
OC90 otoconin 90 1.38249
HHLA1 HERV-H LTR-associating 1 1.38225
KIFC2 kinesin family member C2 1.37943
ARHGAP11B Rho GTPase activating protein 11B 1.37821
ZNF16 zinc finger protein 16 1.37758
TMED10P1 transmembrane emp24-like trafficking protein 10 (yeast) pseudogene 1 1.37674
ZNF252P-AS1 ZNF252P antisense RNA 1 1.37597
HPYR1 Helicobacter pylori responsive 1 (non-protein coding) 1.37106
ZNF252P zinc finger protein 252, pseudogene 1.36952
MIR30B microRNA 30b 1.36401
MIR30D microRNA 30d 1.36401
LOC286094 1.36206
ZFAT zinc finger and AT hook domain containing 1.36055
WISP1 WNT1 inducible signaling pathway protein 1 1.35924
NDRG1 N-myc downstream regulated 1 1.3592
CYHR1 cysteine/histidine-rich 1 1.3467
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 1.34564
KCNQ3 potassium channel, voltage gated KQT-like subfamily Q, member 3 1.34089
NRCAM neuronal cell adhesion molecule 1.34006
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 1.33509
LRRC6 leucine rich repeat containing 6 1.33402
ASAP1-IT1 ASAP1 intronic transcript 1 1.32993

low copy number

Symbol Name Standardized Value
GABRP gamma-aminobutyric acid (GABA) A receptor, pi -3.21049
PPM1L protein phosphatase, Mg2+/Mn2+ dependent, 1L -3.21049
ADGRG2 adhesion G protein-coupled receptor G2 -2.59447
C6ORF222 chromosome 6 open reading frame 222 -2.58345
TAS2R43 taste receptor, type 2, member 43 -2.27554
HSP90AB3P heat shock protein 90kDa alpha (cytosolic), class B member 3, pseudogene -2.26137
CABS1 calcium-binding protein, spermatid-specific 1 -2.25329
PROL1 proline rich, lacrimal 1 -2.25297
NPL N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) -2.23693
SETMAR SET domain and mariner transposase fusion gene -2.2024
PRH1-PRR4 PRH1-PRR4 readthrough -1.89869
SMR3A submaxillary gland androgen regulated protein 3A -1.88646
SMR3B submaxillary gland androgen regulated protein 3B -1.82999
AGMO alkylglycerol monooxygenase -1.81188
DRAM2 DNA-damage regulated autophagy modulator 2 -1.80385
CEPT1 choline/ethanolamine phosphotransferase 1 -1.80385
CD53 CD53 molecule -1.80384
LRIF1 ligand dependent nuclear receptor interacting factor 1 -1.80384
PPM1J protein phosphatase, Mg2+/Mn2+ dependent, 1J -1.7911
FAM19A3 family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 -1.7911
MOV10 Mov10 RISC complex RNA helicase -1.7911
RHOC ras homolog family member C -1.7911
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 -1.79077
LOC643441 uncharacterized LOC643441 -1.79026
AKR7A2P1 aldo-keto reductase family 7, member A2 pseudogene 1 -1.79021
SLC16A1 solute carrier family 16 (monocarboxylate transporter), member 1 -1.79018
LRGUK leucine-rich repeats and guanylate kinase domain containing -1.78929
PIFO primary cilia formation -1.78846
MAB21L3 mab-21-like 3 (C. elegans) -1.78385
MTUS1 microtubule associated tumor suppressor 1 -1.78353
PTPN22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) -1.78046
AP4B1-AS1 AP4B1 antisense RNA 1 -1.78046
BCL2L15 BCL2-like 15 -1.78046
PHTF1 putative homeodomain transcription factor 1 -1.78032
MIR320B1 microRNA 320b-1 -1.77915
ATP1A1-AS1 ATP1A1 antisense RNA 1 -1.77896
ATP1A1 ATPase, Na+/K+ transporting, alpha 1 polypeptide -1.77896
TSPAN2 tetraspanin 2 -1.76273
TSHB thyroid stimulating hormone, beta -1.76273
CSDE1 cold shock domain containing E1, RNA-binding -1.76122
NRAS neuroblastoma RAS viral (v-ras) oncogene homolog -1.76122
SIKE1 suppressor of IKBKE 1 -1.76119
CHI3L2 chitinase 3-like 2 -1.7556
DENND2D DENN/MADD domain containing 2D -1.7556
MIR4256 microRNA 4256 -1.74663
CTTNBP2NL CTTNBP2 N-terminal like -1.74591
NHLH2 nescient helix loop helix 2 -1.73746
SLC22A15 solute carrier family 22, member 15 -1.73737
REEP3 receptor accessory protein 3 -1.73703
RSBN1 round spermatid basic protein 1 -1.73475
DCLRE1B DNA cross-link repair 1B -1.73451
CD2 CD2 molecule -1.73435
AP4B1 adaptor-related protein complex 4, beta 1 subunit -1.73434
HIPK1 homeodomain interacting protein kinase 1 -1.73434
CD58 CD58 molecule -1.73269
TRIM45 tripartite motif containing 45 -1.72445
MIR942 microRNA 942 -1.72411
TTF2 transcription termination factor, RNA polymerase II -1.72394
SYCP1 synaptonemal complex protein 1 -1.71712
BCAS2 breast carcinoma amplified sequence 2 -1.71712
DENND2C DENN/MADD domain containing 2C -1.7171
AMPD1 adenosine monophosphate deaminase 1 -1.71699
TRIM33 tripartite motif containing 33 -1.7167
LINC01160 long intergenic non-protein coding RNA 1160 -1.71653
ATP5F1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 -1.71646
MAN1A2 mannosidase, alpha, class 1A, member 2 -1.71644
OVGP1 oviductal glycoprotein 1, 120kDa -1.71643
WDR77 WD repeat domain 77 -1.71643
C1ORF162 chromosome 1 open reading frame 162 -1.71643
VTCN1 V-set domain containing T cell activation inhibitor 1 -1.71507
CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit -1.70813
WNT2B wingless-type MMTV integration site family, member 2B -1.70536
ST7L suppression of tumorigenicity 7 like -1.70381
VANGL1 VANGL planar cell polarity protein 1 -1.69571
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 -1.69235
GBE1 glucan (1,4-alpha-), branching enzyme 1 -1.68415
JMJD1C-AS1 JMJD1C antisense RNA 1 -1.66103
PGCP1 progastricsin (pepsinogen C) pseudogene 1 -1.65993
CASQ2 calsequestrin 2 (cardiac muscle) -1.65805
OLFML3 olfactomedin-like 3 -1.65559
SPAG17 sperm associated antigen 17 -1.653
NGF nerve growth factor (beta polypeptide) -1.65203
GDAP2 ganglioside induced differentiation associated protein 2 -1.65004
SYT6 synaptotagmin VI -1.65003
WDR3 WD repeat domain 3 -1.64995
PTGFRN prostaglandin F2 receptor inhibitor -1.64931
EXOC4 exocyst complex component 4 -1.63705
FAM46C family with sequence similarity 46, member C -1.63186
MIR1296 microRNA 1296 -1.61961
FAM35BP family with sequence similarity 35, member A pseudogene -1.61439
RAP1A RAP1A, member of RAS oncogene family -1.60578
FAM212B-AS1 FAM212B antisense RNA 1 -1.60577
DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 -1.59963
LRIG2 leucine-rich repeats and immunoglobulin-like domains 2 -1.59342
CD101 CD101 molecule -1.583
ADORA3 adenosine A3 receptor -1.57412
FAM212B family with sequence similarity 212, member B -1.56849
CDH4 cadherin 4, type 1, R-cadherin (retinal) -1.54278
KCND3 potassium channel, voltage gated Shal related subfamily D, member 3 -1.51632
CHIA chitinase, acidic -1.51188
SH3PXD2A SH3 and PX domains 2A -1.50707
TMEM132D transmembrane protein 132D -1.46762
CHIAP2 chitinase, acidic pseudogene 2 -1.46309
PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) -1.44942
PDE3A phosphodiesterase 3A, cGMP-inhibited -1.43463
FAM157A family with sequence similarity 157, member A -1.40941
BAGE B melanoma antigen -1.39638
JMJD1C jumonji domain containing 1C -1.38901