LOC100499484-C9ORF174 Gene

Name LOC100499484-C9orf174 readthrough
Description This locus represents a set of read-through transcripts spanning an upstream pseudogene (GeneID:100499484) extending into a downstream protein-coding locus (GeneID:100499483). All of the read-through transcripts are candidates for nonsense-mediated decay (NMD), so they are not thought to express a protein. [provided by RefSeq, Aug 2010]
Synonyms SUGT1P4-STRA6LP-CCDC180
NCBI Gene ID 57653
API
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Predicted Functions View LOC100499484-C9ORF174's ARCHS4 Predicted Functions.
Co-expressed Genes View LOC100499484-C9ORF174's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LOC100499484-C9ORF174's ARCHS4 Predicted Functions.

Functional Associations

LOC100499484-C9ORF174 has 326 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.

Click the + buttons to view associations for LOC100499484-C9ORF174 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LOC100499484-C9ORF174 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LOC100499484-C9ORF174 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LOC100499484-C9ORF174 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LOC100499484-C9ORF174 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
dbGAP Gene-Trait Associations traits associated with LOC100499484-C9ORF174 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with LOC100499484-C9ORF174 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LOC100499484-C9ORF174 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LOC100499484-C9ORF174 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LOC100499484-C9ORF174 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LOC100499484-C9ORF174 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.